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Literature DB >> 21911332

Metavir: a web server dedicated to virome analysis.

Simon Roux¹, Michaël Faubladier, Antoine Mahul, Nils Paulhe, Aurélien Bernard, Didier Debroas, François Enault.

Abstract

SUMMARY: Metavir is a web server dedicated to the analysis of viral metagenomes (viromes). In addition to classical approaches for analyzing metagenomes (general sequence characteristics, taxonomic composition), new tools developed specifically for viral sequence analysis make it possible to: (i) explore viral diversity through automatically constructed phylogenies for selected marker genes, (ii) estimate gene richness through rarefaction curves and (iii) perform cross-comparison against other viromes using sequence similarities. Metavir is thus unique as a platform that allows a comprehensive virome analysis. AVAILABILITY: Metavir is freely available online at: http://metavir-meb.univ-bpclermont.fr. CONTACT: simon.roux@univ-bpclermont.fr. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Entities: Species

Mesh：

Year: 2011 PMID： 21911332 DOI： 10.1093/bioinformatics/btr519

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

73 in total

1. Niche-dependent genetic diversity in Antarctic metaviromes.

Authors: Olivier Zablocki; Lonnie van Zyl; Evelien M Adriaenssens; Enrico Rubagotti; Marla Tuffin; Stephen C Cary; Don Cowan
Journal: Bacteriophage Date: 2014-12-16

2. Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis.

Authors: Benjamin Bolduc; Jennifer F Wirth; Aurélien Mazurie; Mark J Young
Journal: ISME J Date: 2015-06-30 Impact factor: 10.302

Review 3. Rising to the challenge: accelerated pace of discovery transforms marine virology.

Authors: Jennifer R Brum; Matthew B Sullivan
Journal: Nat Rev Microbiol Date: 2015-02-02 Impact factor: 60.633

4. Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study.

Authors: Tom J Petty; Samuel Cordey; Ismael Padioleau; Mylène Docquier; Lara Turin; Olivier Preynat-Seauve; Evgeny M Zdobnov; Laurent Kaiser
Journal: J Clin Microbiol Date: 2014-07-09 Impact factor: 5.948

10. High-level diversity of tailed phages, eukaryote-associated viruses, and virophage-like elements in the metaviromes of antarctic soils.

Authors: Olivier Zablocki; Lonnie van Zyl; Evelien M Adriaenssens; Enrico Rubagotti; Marla Tuffin; Stephen Craig Cary; Don Cowan
Journal: Appl Environ Microbiol Date: 2014-08-29 Impact factor: 4.792

Metavir: a web server dedicated to virome analysis.

1. Niche-dependent genetic diversity in Antarctic metaviromes.

2. Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis.

Review 3. Rising to the challenge: accelerated pace of discovery transforms marine virology.

4. Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study.

5. Classification and quantification of bacteriophage taxa in human gut metagenomes.

Review 6. Using signature genes as tools to assess environmental viral ecology and diversity.

7. Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland.

8. Diversity and Distribution Characteristics of Viruses in Soils of a Marine-Terrestrial Ecotone in East China.

Review 9. Unraveling the web of viroinformatics: computational tools and databases in virus research.

10. High-level diversity of tailed phages, eukaryote-associated viruses, and virophage-like elements in the metaviromes of antarctic soils.