Literature DB >> 21907211

Reduction of Boolean network models.

Alan Veliz-Cuba1.   

Abstract

Boolean networks have been successfully used in modelling gene regulatory networks. However, for large networks, analysis by simulation becomes unfeasible. In this paper we propose a reduction method for Boolean networks that decreases the size of the network, while preserving important dynamical properties and topological features. As a result, the reduced network can be used to infer properties about the original network and to gain a better understanding of the role of network topology on the dynamics. In particular, we use the reduction method to study steady states of Boolean networks and apply our results to models of Th-lymphocyte differentiation and the lac operon.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2011        PMID: 21907211     DOI: 10.1016/j.jtbi.2011.08.042

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  26 in total

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Review 7.  Boolean modelling as a logic-based dynamic approach in systems medicine.

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8.  Network-Based Analysis of Bortezomib Pharmacodynamic Heterogeneity in Multiple Myeloma Cells.

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9.  Detecting small attractors of large Boolean networks by function-reduction-based strategy.

Authors:  Qiben Zheng; Liangzhong Shen; Xuequn Shang; Wenbin Liu
Journal:  IET Syst Biol       Date:  2016-04       Impact factor: 1.615

10.  Dynamical and structural analysis of a T cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemia.

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Journal:  PLoS Comput Biol       Date:  2011-11-10       Impact factor: 4.475

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