Literature DB >> 21902588

Identification of new CRF51_01B in Singapore using full genome analysis of three HIV type 1 isolates.

Oon Tek Ng1, Lindsay M Eyzaguirre, Jean K Carr, Kuan Kiat Chew, Li Lin, Arlene Chua, Yee Sin Leo, Andrew D Redd, Thomas C Quinn, Oliver Laeyendecker.   

Abstract

A recent HIV-1 molecular epidemiology survey in Singapore identified a novel CRF01_AE/B recombinant form, which accounted for 13 (11.9%) of 109 patient samples. Peripheral blood mononuclear cell DNA from three of these 13 patients was used to generate near full-length sequences to characterize the novel CRF01_AE/B recombinant form. The three isolates had a recombinant structure composed of CRF01_AE and subtype B, and shared identical breakpoints. As the three patients were not epidemiologically linked, this recombinant form has been designated CRF51_01B. Identification of the novel recombinant forms indicates ongoing active HIV-1 transmission in Singapore.

Entities:  

Mesh：

Year:  2011        PMID： 21902588      PMCID： PMC3332370          DOI： 10.1089/aid.2011.0177

Source DB:  PubMed          Journal:  AIDS Res Hum Retroviruses        ISSN： 0889-2229            Impact factor:   2.205


  11 in total

1.  HIV-1 nomenclature proposal.

Authors:  D L Robertson; J P Anderson; J A Bradac; J K Carr; B Foley; R K Funkhouser; F Gao; B H Hahn; M L Kalish; C Kuiken; G H Learn; T Leitner; F McCutchan; S Osmanov; M Peeters; D Pieniazek; M Salminen; P M Sharp; S Wolinsky; B Korber
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

2.  MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment.

Authors:  Sudhir Kumar; Koichiro Tamura; Masatoshi Nei
Journal:  Brief Bioinform       Date:  2004-06       Impact factor: 11.622

3.  Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia.

Authors:  Kok Keng Tee; Xiao-Jie Li; Kyoko Nohtomi; Kee Peng Ng; Adeeba Kamarulzaman; Yutaka Takebe
Journal:  J Acquir Immune Defic Syndr       Date:  2006-12-15       Impact factor: 3.731

4.  Identification of CRF34_01B, a second circulating recombinant form unrelated to and more complex than CRF15_01B, among injecting drug users in northern Thailand.

Authors:  Sodsai Tovanabutra; Gustavo H Kijak; Chris Beyrer; Christiana Gammon-Richardson; Supachai Sakkhachornphop; Tasanai Vongchak; Jaroon Jittiwutikarn; Myat Htoo Razak; Eric Sanders-Buell; Merlin L Robb; Vinai Suriyanon; Deborah L Birx; Nelson L Michael; David D Celentano; Francine E McCutchan
Journal:  AIDS Res Hum Retroviruses       Date:  2007-06       Impact factor: 2.205

5.  Molecular epidemiology of HIV type 1 in Singapore and identification of novel CRF01_AE/B recombinant forms.

Authors:  Oon Tek Ng; Supriya Munshaw; Susanna L Lamers; Kuan Kiat Chew; Li Lin; Andrew D Redd; Jordyn Manucci; Thomas C Quinn; Stuart C Ray; Arlene Chua; Yee Sin Leo; Oliver Laeyendecker
Journal:  AIDS Res Hum Retroviruses       Date:  2011-02-14       Impact factor: 2.205

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning.

Authors:  M O Salminen; J K Carr; D S Burke; F E McCutchan
Journal:  AIDS Res Hum Retroviruses       Date:  1995-11       Impact factor: 2.205

8.  Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand.

Authors:  J K Carr; M O Salminen; C Koch; D Gotte; A W Artenstein; P A Hegerich; D St Louis; D S Burke; F E McCutchan
Journal:  J Virol       Date:  1996-09       Impact factor: 5.103

9.  Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination.

Authors:  K S Lole; R C Bollinger; R S Paranjape; D Gadkari; S S Kulkarni; N G Novak; R Ingersoll; H W Sheppard; S C Ray
Journal:  J Virol       Date:  1999-01       Impact factor: 5.103

10.  A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand.

Authors:  Sodsai Tovanabutra; Veerachai Watanaveeradej; Kwanjai Viputtikul; Mark De Souza; Myat Htoo Razak; Vinai Suriyanon; Jaroon Jittiwutikarn; Somchai Sriplienchan; Sorachai Nitayaphan; Michael W Benenson; Narongrid Sirisopana; Philip O Renzullo; Arthur E Brown; Merlin L Robb; Chris Beyrer; David D Celentano; John G McNeil; Deborah L Birx; Jean K Carr; Francine E McCutchan
Journal:  AIDS Res Hum Retroviruses       Date:  2003-07       Impact factor: 2.205
View more
  26 in total

1.  Identification of a novel HIV type 1 circulating recombinant form (CRF52_01B) in Southeast Asia.

Authors:  Yongjian Liu; Lin Li; Zuoyi Bao; Hanping Li; Daomin Zhuang; Siyang Liu; Xiaolin Wang; Tianyi Li; Lei Jia; Shaomin Yang; Jingyun Li
Journal:  AIDS Res Hum Retroviruses       Date:  2012-04-05       Impact factor: 2.205

2.  HIV-1 CRF01_AE and Subtype B Transmission Networks Crossover: A New AE/B Recombinant Identified in Japan.

Authors:  Masumi Hosaka; Seiichiro Fujisaki; Aki Masakane; Junko Hattori; Teiichiro Shiino; Hiroyuki Gatanaga; Urara Shigemi; Reiko Okazaki; Atsuko Hachiya; Masakazu Matsuda; Shiro Ibe; Yasumasa Iwatani; Yoshiyuki Yokomaku; Wataru Sugiura
Journal:  AIDS Res Hum Retroviruses       Date:  2015-11-16       Impact factor: 2.205

3.  Genome sequences of a novel HIV-1 CRF53_01B identified in Malaysia.

Authors:  Wei Zhen Chow; Haider Al-Darraji; Yeat Mei Lee; Yutaka Takebe; Adeeba Kamarulzaman; Kok Keng Tee
Journal:  J Virol       Date:  2012-10       Impact factor: 5.103

4.  Molecular evolution of the HIV-1 Thai epidemic between the time of RV144 immunogen selection to the execution of the vaccine efficacy trial.

Authors:  Gustavo H Kijak; Sodsai Tovanabutra; Supachai Rerks-Ngarm; Sorachai Nitayaphan; Chirapa Eamsila; Prayura Kunasol; Chirasak Khamboonruang; Prasert Thongcharoen; Chawetsan Namwat; Nakorn Premsri; Michael Benenson; Patricia Morgan; Meera Bose; Eric Sanders-Buell; Robert Paris; Merlin L Robb; Deborah L Birx; Mark S De Souza; Francine E McCutchan; Nelson L Michael; Jerome H Kim
Journal:  J Virol       Date:  2013-04-10       Impact factor: 5.103

Review 5.  Recent advances in research of HIV infection: implications of viral and host genetics on treatment and prevention.

Authors:  R E Haaland; J A Johnson; J Tang
Journal:  Public Health Genomics       Date:  2013-03-18       Impact factor: 2.000

6.  Near full-length genome sequence of a novel HIV-1 recombinant form (CRF01_AE/B) detected among men who have sex with men in Jilin Province, China.

Authors:  Xingguang Li; Yi Feng; Yao Yang; Yanli Chen; Qi Guo; Liuyan Sun; Xihui Zang; Hui Xing; Yiming Shao
Journal:  AIDS Res Hum Retroviruses       Date:  2014-03-06       Impact factor: 2.205

7.  Genome Sequences of a Novel HIV-1 Circulating Recombinant Form (CRF59_01B) Identified among Men Who Have Sex with Men in Northeastern China.

Authors:  Xiaoxu Han; Minghui An; Weiqing Zhang; Bin Zhao; Zhenxing Chu; Yutaka Takebe; Hong Shang
Journal:  Genome Announc       Date:  2013-06-27

8.  Molecular diversity of HIV-1 among people who inject drugs in Kuala Lumpur, Malaysia: massive expansion of circulating recombinant form (CRF) 33_01B and emergence of multiple unique recombinant clusters.

Authors:  Wei Zhen Chow; Lai Yee Ong; Siti Humaira Razak; Yeat Mei Lee; Kim Tien Ng; Yean Kong Yong; Azureen Azmel; Yutaka Takebe; Haider Abdulrazzaq Abed Al-Darraji; Adeeba Kamarulzaman; Kok Keng Tee
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

9.  Genome Sequences of a Novel HIV-1 Circulating Recombinant Form, CRF55_01B, Identified in China.

Authors:  Xiaoxu Han; Minghui An; Weiqing Zhang; Weiping Cai; Xi Chen; Yutaka Takebe; Hong Shang
Journal:  Genome Announc       Date:  2013-01-24

10.  High prevalence of CXCR4 usage among treatment-naive CRF01_AE and CRF51_01B-infected HIV-1 subjects in Singapore.

Authors:  Kah Ying Ng; Kuan Kiat Chew; Palvinder Kaur; Joe Yap Kwan; Wei Xin Khong; Li Lin; Arlene Chua; Mei Ting Tan; Thomas C Quinn; Oliver Laeyendecker; Yee Sin Leo; Oon Tek Ng
Journal:  BMC Infect Dis       Date:  2013-02-19       Impact factor: 3.090
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.