Literature DB >> 21902307

Improving free-energy estimates from unidirectional work measurements: theory and experiment.

Matteo Palassini1, Felix Ritort.   

Abstract

We derive analytical expressions for the bias of the Jarzynski free-energy estimator from N nonequilibrium work measurements, for a generic work distribution. To achieve this, we map the estimator onto the random energy model in a suitable scaling limit parametrized by (logN)/μ, where μ measures the width of the lower tail of the work distribution, and then compute the finite-N corrections to this limit with different approaches for different regimes of (logN)/μ. We show that these expressions describe accurately the bias for a wide class of work distributions and exploit them to build an improved free-energy estimator from unidirectional work measurements. We apply the method to optical tweezers unfolding and refolding experiments on DNA hairpins of varying loop size and dissipation, displaying both near-Gaussian and non-Gaussian work distributions.

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Year:  2011        PMID: 21902307     DOI: 10.1103/PhysRevLett.107.060601

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  11 in total

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2.  Free-energy inference from partial work measurements in small systems.

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4.  Nascent RNA transcripts facilitate the formation of G-quadruplexes.

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Journal:  Nucleic Acids Res       Date:  2014-05-14       Impact factor: 16.971

5.  On the improvement of free-energy calculation from steered molecular dynamics simulations using adaptive stochastic perturbation protocols.

Authors:  Ognjen Perišić; Hui Lu
Journal:  PLoS One       Date:  2014-09-18       Impact factor: 3.240

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7.  Entropic bonding of the type 1 pilus from experiment and simulation.

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Journal:  R Soc Open Sci       Date:  2020-04-15       Impact factor: 2.963

8.  Structural and mechanical properties of individual human telomeric G-quadruplexes in molecularly crowded solutions.

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Journal:  Nucleic Acids Res       Date:  2013-02-08       Impact factor: 16.971

9.  Resolving Non-Specific and Specific Adhesive Interactions of Catechols at Solid/Liquid Interfaces at the Molecular Scale.

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Journal:  Angew Chem Int Ed Engl       Date:  2016-07-04       Impact factor: 15.336

10.  Molten globule-like transition state of protein barnase measured with calorimetric force spectroscopy.

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Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-10       Impact factor: 12.779

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