Literature DB >> 21901361

The model-data fusion pitfall: assuming certainty in an uncertain world.

Trevor F Keenan1, Mariah S Carbone, Markus Reichstein, Andrew D Richardson.   

Abstract

Model-data fusion is a powerful framework by which to combine models with various data streams (including observations at different spatial or temporal scales), and account for associated uncertainties. The approach can be used to constrain estimates of model states, rate constants, and driver sensitivities. The number of applications of model-data fusion in environmental biology and ecology has been rising steadily, offering insights into both model and data strengths and limitations. For reliable model-data fusion-based results, however, the approach taken must fully account for both model and data uncertainties in a statistically rigorous and transparent manner. Here we review and outline the cornerstones of a rigorous model-data fusion approach, highlighting the importance of properly accounting for uncertainty. We conclude by suggesting a code of best practices, which should serve to guide future efforts.

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Year:  2011        PMID: 21901361     DOI: 10.1007/s00442-011-2106-x

Source DB:  PubMed          Journal:  Oecologia        ISSN: 0029-8549            Impact factor:   3.225


  8 in total

1.  Is tree root respiration more sensitive than heterotrophic respiration to changes in soil temperature?

Authors:  Peter Högberg
Journal:  New Phytol       Date:  2010-07-28       Impact factor: 10.151

2.  Concurrent and lagged impacts of an anomalously warm year on autotrophic and heterotrophic components of soil respiration: a deconvolution analysis.

Authors:  Xuhui Zhou; Yiqi Luo; Chao Gao; Paul S J Verburg; John A Arnone; Anthony Darrouzet-Nardi; David S Schimel
Journal:  New Phytol       Date:  2010-04-20       Impact factor: 10.151

3.  Estimating parameters of a forest ecosystem C model with measurements of stocks and fluxes as joint constraints.

Authors:  Andrew D Richardson; Mathew Williams; David Y Hollinger; David J P Moore; D Bryan Dail; Eric A Davidson; Neal A Scott; Robert S Evans; Holly Hughes; John T Lee; Charles Rodrigues; Kathleen Savage
Journal:  Oecologia       Date:  2010-09       Impact factor: 3.225

4.  Coupling between carbon cycling and climate in a high-elevation, subalpine forest: a model-data fusion analysis.

Authors:  William J Sacks; David S Schimel; Russell K Monson
Journal:  Oecologia       Date:  2006-09-30       Impact factor: 3.225

5.  Parameter identifiability, constraint, and equifinality in data assimilation with ecosystem models.

Authors:  Yiqi Luo; Ensheng Weng; Xiaowen Wu; Chao Gao; Xuhui Zhou; Li Zhang
Journal:  Ecol Appl       Date:  2009-04       Impact factor: 4.657

Review 6.  Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling.

Authors:  Noel Cressie; Catherine A Calder; James S Clark; Jay M Ver Hoef; Christopher K Wikle
Journal:  Ecol Appl       Date:  2009-04       Impact factor: 4.657

7.  Relative information contributions of model vs. data to short- and long-term forecasts of forest carbon dynamics.

Authors:  Ensheng Weng; Yiqi Luo
Journal:  Ecol Appl       Date:  2011-07       Impact factor: 4.657

8.  A primer for data assimilation with ecological models using Markov Chain Monte Carlo (MCMC).

Authors:  J M Zobitz; A R Desai; D J P Moore; M A Chadwick
Journal:  Oecologia       Date:  2011-08-27       Impact factor: 3.225

  8 in total
  10 in total

Review 1.  Climate controls over ecosystem metabolism: insights from a fifteen-year inductive artificial neural network synthesis for a subalpine forest.

Authors:  Loren P Albert; Trevor F Keenan; Sean P Burns; Travis E Huxman; Russell K Monson
Journal:  Oecologia       Date:  2017-03-25       Impact factor: 3.225

Review 2.  A tree-ring perspective on the terrestrial carbon cycle.

Authors:  Flurin Babst; M Ross Alexander; Paul Szejner; Olivier Bouriaud; Stefan Klesse; John Roden; Philippe Ciais; Benjamin Poulter; David Frank; David J P Moore; Valerie Trouet
Journal:  Oecologia       Date:  2014-08-14       Impact factor: 3.225

3.  The decadal state of the terrestrial carbon cycle: Global retrievals of terrestrial carbon allocation, pools, and residence times.

Authors:  A Anthony Bloom; Jean-François Exbrayat; Ivar R van der Velde; Liang Feng; Mathew Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

4.  Modeling Climate Suitability of the Western Blacklegged Tick in California.

Authors:  Rebecca J Eisen; Shane Feirer; Kerry A Padgett; Micah B Hahn; Andrew J Monaghan; Vicki L Kramer; Robert S Lane; Maggi Kelly
Journal:  J Med Entomol       Date:  2018-08-29       Impact factor: 2.278

5.  Surface-Atmosphere Coupling Scale, the Fate of Water, and Ecophysiological Function in a Brazilian Forest.

Authors:  Ian T Baker; A Scott Denning; Don A Dazlich; Anna B Harper; Mark D Branson; David A Randall; Morgan C Phillips; Katherine D Haynes; Sarah M Gallup
Journal:  J Adv Model Earth Syst       Date:  2019-08-05       Impact factor: 6.660

6.  Reference carbon cycle dataset for typical Chinese forests via colocated observations and data assimilation.

Authors:  Honglin He; Rong Ge; Xiaoli Ren; Li Zhang; Qingqing Chang; Qian Xu; Guoyi Zhou; Zongqiang Xie; Silong Wang; Huimin Wang; Qibin Zhang; Anzhi Wang; Zexin Fan; Yiping Zhang; Weijun Shen; Huajun Yin; Luxiang Lin; Mathew Williams; Guirui Yu
Journal:  Sci Data       Date:  2021-02-02       Impact factor: 6.444

7.  Quantifying the value of surveillance data for improving model predictions of lymphatic filariasis elimination.

Authors:  Edwin Michael; Swarnali Sharma; Morgan E Smith; Panayiota Touloupou; Federica Giardina; Joaquin M Prada; Wilma A Stolk; Deirdre Hollingsworth; Sake J de Vlas
Journal:  PLoS Negl Trop Dis       Date:  2018-10-08

8.  Constraining modelled global vegetation dynamics and carbon turnover using multiple satellite observations.

Authors:  Matthias Forkel; Markus Drüke; Martin Thurner; Wouter Dorigo; Sibyll Schaphoff; Kirsten Thonicke; Werner von Bloh; Nuno Carvalhais
Journal:  Sci Rep       Date:  2019-12-10       Impact factor: 4.379

9.  A spatial-temporal continuous dataset of the transpiration to evapotranspiration ratio in China from 1981-2015.

Authors:  Zhongen Niu; Honglin He; Gaofeng Zhu; Xiaoli Ren; Li Zhang; Kun Zhang
Journal:  Sci Data       Date:  2020-10-27       Impact factor: 6.444

10.  Iterative data-driven forecasting of the transmission and management of SARS-CoV-2/COVID-19 using social interventions at the county-level.

Authors:  Ken Newcomb; Morgan E Smith; Rose E Donohue; Sebastian Wyngaard; Caleb Reinking; Christopher R Sweet; Marissa J Levine; Thomas R Unnasch; Edwin Michael
Journal:  Sci Rep       Date:  2022-01-18       Impact factor: 4.379

  10 in total

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