Literature DB >> 21898825

UniCarbKB: putting the pieces together for glycomics research.

Matthew P Campbell1, Catherine A Hayes, Weston B Struwe, Marc R Wilkins, Kiyoko F Aoki-Kinoshita, David J Harvey, Pauline M Rudd, Daniel Kolarich, Frederique Lisacek, Niclas G Karlsson, Nicolle H Packer.   

Abstract

Despite the success of several international initiatives the glycosciences still lack a managed infrastructure that contributes to the advancement of research through the provision of comprehensive structural and experimental glycan data collections. UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The knowledgebase will offer a freely accessible and information-rich resource supported by querying interfaces, annotation technologies and the adoption of common standards to integrate structural, experimental and functional data. The UniCarbKB framework endeavors to support the growth of glycobioinformatics and the dissemination of knowledge through the provision of an open and unified portal to encourage the sharing of data. In order to achieve this, the framework is committed to the development of tools and procedures that support data annotation, and expanding interoperability through cross-referencing of existing databases. Database URL: http://www.unicarbkb.org.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2011        PMID: 21898825     DOI: 10.1002/pmic.201100302

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  21 in total

1.  An Automated, High-Throughput Method for Interpreting the Tandem Mass Spectra of Glycosaminoglycans.

Authors:  Jiana Duan; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2018-05-22       Impact factor: 3.109

2.  Signature-Ion-Triggered Mass Spectrometry Approach Enabled Discovery of N- and O-Linked Glycosylated Neuropeptides in the Crustacean Nervous System.

Authors:  Qinjingwen Cao; Qing Yu; Yang Liu; Zhengwei Chen; Lingjun Li
Journal:  J Proteome Res       Date:  2020-01-13       Impact factor: 4.466

3.  GlycoRDF: an ontology to standardize glycomics data in RDF.

Authors:  Rene Ranzinger; Kiyoko F Aoki-Kinoshita; Matthew P Campbell; Shin Kawano; Thomas Lütteke; Shujiro Okuda; Daisuke Shinmachi; Toshihide Shikanai; Hiromichi Sawaki; Philip Toukach; Masaaki Matsubara; Issaku Yamada; Hisashi Narimatsu
Journal:  Bioinformatics       Date:  2014-11-11       Impact factor: 6.937

4.  The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics.

Authors:  Kiyoko F Aoki-Kinoshita; Hiromichi Sawaki; Hyun Joo An; Jin Won Cho; Daniel Hsu; Masaki Kato; Shin Kawano; Toshisuke Kawasaki; Kay-Hooi Khoo; Jaehan Kim; Jin-Dong Kim; Xianyu Li; Thomas Lütteke; Shujiro Okuda; Nicolle H Packer; James C Paulson; Rahul Raman; René Ranzinger; Huali Shen; Toshihide Shikanai; Issaku Yamada; Pengyuan Yang; Yoshiki Yamaguchi; Wantao Ying; Jong Shin Yoo; Yang Zhang; Hisashi Narimatsu
Journal:  Glycobiology       Date:  2013-02       Impact factor: 4.313

Review 5.  Using databases and web resources for glycomics research.

Authors:  Kiyoko F Aoki-Kinoshita
Journal:  Mol Cell Proteomics       Date:  2013-01-16       Impact factor: 5.911

Review 6.  Mass spectrometry of glycans.

Authors:  Liang Han; Catherine E Costello
Journal:  Biochemistry (Mosc)       Date:  2013-07       Impact factor: 2.487

7.  EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data.

Authors:  Khalifeh Al Jadda; Melody P Porterfield; Robert Bridger; Christian Heiss; Michael Tiemeyer; Lance Wells; John A Miller; William S York; Rene Ranzinger
Journal:  Bioinformatics       Date:  2014-09-12       Impact factor: 6.937

8.  ProSight Lite: graphical software to analyze top-down mass spectrometry data.

Authors:  Ryan T Fellers; Joseph B Greer; Bryan P Early; Xiang Yu; Richard D LeDuc; Neil L Kelleher; Paul M Thomas
Journal:  Proteomics       Date:  2015-04       Impact factor: 3.984

9.  Building a PGC-LC-MS N-glycan retention library and elution mapping resource.

Authors:  Jodie L Abrahams; Matthew P Campbell; Nicolle H Packer
Journal:  Glycoconj J       Date:  2017-09-13       Impact factor: 2.916

Review 10.  A review of methods for interpretation of glycopeptide tandem mass spectral data.

Authors:  Han Hu; Kshitij Khatri; Joshua Klein; Nancy Leymarie; Joseph Zaia
Journal:  Glycoconj J       Date:  2015-11-26       Impact factor: 2.916

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