Literature DB >> 21898206

Recent developments in (15)N NMR relaxation studies that probe protein backbone dynamics.

Rieko Ishima1.   

Abstract

Nuclear Magnetic Resonance (NMR) relaxation is a powerful technique that provides information about internal dynamics associated with configurational energetics in proteins, as well as site-specific information involved in conformational equilibria. In particular, (15)N relaxation is a useful probe to characterize overall and internal backbone dynamics of proteins because the relaxation mainly reflects reorientational motion of the N-H bond vector. Over the past 20 years, experiments and protocols for analysis of (15)N R (1), R 2, and the heteronuclear (15)N-{(1)H} NOE data have been well established. The development of these methods has kept pace with the increase in the available static-magnetic field strength, providing dynamic parameters optimized from data fitting at multiple field strengths. Using these methodological advances, correlation times for global tumbling and order parameters and correlation times for internal motions of many proteins have been determined. More recently, transverse relaxation dispersion experiments have extended the range of NMR relaxation studies to the milli- to microsecond time scale, and have provided quantitative information about functional conformational exchange in proteins. Here, we present an overview of recent advances in (15)N relaxation experiments to characterize protein backbone dynamics.

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Year:  2012        PMID: 21898206     DOI: 10.1007/128_2011_212

Source DB:  PubMed          Journal:  Top Curr Chem        ISSN: 0340-1022


  6 in total

1.  Enhanced accuracy of kinetic information from CT-CPMG experiments by transverse rotating-frame spectroscopy.

Authors:  David Ban; Adam Mazur; Marta G Carneiro; T Michael Sabo; Karin Giller; Leonardus M I Koharudin; Stefan Becker; Angela M Gronenborn; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2013-08-15       Impact factor: 2.835

2.  Simultaneous determination of fast and slow dynamics in molecules using extreme CPMG relaxation dispersion experiments.

Authors:  Jithender G Reddy; Supriya Pratihar; David Ban; Sebastian Frischkorn; Stefan Becker; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2017-11-29       Impact factor: 2.835

3.  Differential Flap Dynamics in Wild-type and a Drug Resistant Variant of HIV-1 Protease Revealed by Molecular Dynamics and NMR Relaxation.

Authors:  Yufeng Cai; Nese Kurt Yilmaz; Wazo Myint; Rieko Ishima; Celia A Schiffer
Journal:  J Chem Theory Comput       Date:  2012-04-17       Impact factor: 6.006

4.  Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition.

Authors:  Olivier Duss; Erich Michel; Nana Diarra dit Konté; Mario Schubert; Frédéric H-T Allain
Journal:  Nucleic Acids Res       Date:  2014-02-21       Impact factor: 16.971

5.  Solution structural analysis of the single-domain parvulin TbPin1.

Authors:  Lifang Sun; Xueji Wu; Yu Peng; Jian Yuan Goh; Yih-Cherng Liou; Donghai Lin; Yufen Zhao
Journal:  PLoS One       Date:  2012-08-10       Impact factor: 3.240

6.  The "long tail" of the protein tumbling correlation function: observation by (1)H NMR relaxometry in a wide frequency and concentration range.

Authors:  Matthias Roos; Marius Hofmann; Susanne Link; Maria Ott; Jochen Balbach; Ernst Rössler; Kay Saalwächter; Alexey Krushelnitsky
Journal:  J Biomol NMR       Date:  2015-11-18       Impact factor: 2.835

  6 in total

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