Literature DB >> 21898046

Genetic structure of farmer-managed varieties in clonally-propagated crops.

N Scarcelli1, S Tostain, Y Vigouroux, V Luong, M N Baco, C Agbangla, O Daïnou, J L Pham.   

Abstract

The relative role of sexual reproduction and mutation in shaping the diversity of clonally propagated crops is largely unknown. We analyzed the genetic diversity of yam-a vegetatively-propagated crop-to gain insight into how these two factors shape its diversity in relation with farmers' classifications. Using 15 microsatellite loci, we analyzed 485 samples of 10 different yam varieties. We identified 33 different genotypes organized in lineages supported by high bootstrap values. We computed the probability that these genotypes appeared by sexual reproduction or mutation within and between each lineage. This allowed us to interpret each lineage as a product of sexual reproduction that has evolved by mutation. Moreover, we clearly noted a similarity between the genetic structure and farmers' classifications. Each variety could thus be interpreted as being the product of sexual reproduction having evolved by mutation. This highly structured diversity of farmer-managed varieties has consequences for the preservation of yam diversity.

Mesh:

Year:  2011        PMID: 21898046     DOI: 10.1007/s10709-011-9607-8

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  16 in total

1.  How to track and assess genotyping errors in population genetics studies.

Authors:  A Bonin; E Bellemain; P Bronken Eidesen; F Pompanon; C Brochmann; P Taberlet
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2.  Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin.

Authors:  N Scarcelli; S Tostain; Y Vigouroux; C Agbangla; O Daïnou; J-L Pham
Journal:  Mol Ecol       Date:  2006-08       Impact factor: 6.185

3.  A global perspective of the richness and evenness of traditional crop-variety diversity maintained by farming communities.

Authors:  Devra I Jarvis; Anthony H D Brown; Pham Hung Cuong; Luis Collado-Panduro; Luis Latournerie-Moreno; Sanjaya Gyawali; Tesema Tanto; Mahamadou Sawadogo; Istvan Mar; Mohammed Sadiki; Nguyen Thi-Ngoc Hue; Luis Arias-Reyes; Didier Balma; Jwala Bajracharya; Fernando Castillo; Deepak Rijal; Loubna Belqadi; Ram Rana; Seddik Saidi; Jeremy Ouedraogo; Roger Zangre; Keltoum Rhrib; Jose Luis Chavez; Daniel Schoen; Bhuwon Sthapit; Paola De Santis; Carlo Fadda; Toby Hodgkin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-24       Impact factor: 11.205

4.  Microsatellites, from molecules to populations and back.

Authors:  P Jarne; P J Lagoda
Journal:  Trends Ecol Evol       Date:  1996-10       Impact factor: 17.712

Review 5.  Seed banks and molecular maps: unlocking genetic potential from the wild.

Authors:  S D Tanksley; S R McCouch
Journal:  Science       Date:  1997-08-22       Impact factor: 47.728

Review 6.  A unified approach to study hypervariable polymorphisms: statistical considerations of determining relatedness and population distances.

Authors:  R Chakraborty; L Jin
Journal:  EXS       Date:  1993

7.  Segregation patterns of isozyme loci and microsatellite markers show the diploidy of African yam Dioscorea rotundata (2n = 40).

Authors:  Nora Scarcelli; Ogoubi Daïnou; Clément Agbangla; Serge Tostain; Jean-Louis Pham
Journal:  Theor Appl Genet       Date:  2005-06-02       Impact factor: 5.699

8.  Genetic diversity and variety composition of cassava on small-scale farms in Uganda: an interdisciplinary study using genetic markers and farmer interviews.

Authors:  Elizabeth Balyejusa Kizito; Linley Chiwona-Karltun; Thomas Egwang; Martin Fregene; Anna Westerbergh
Journal:  Genetica       Date:  2006-11-03       Impact factor: 1.082

9.  Evolution of cassava (Manihot esculenta Crantz) after recent introduction into a South Pacific Island system: the contribution of sex to the diversification of a clonally propagated crop.

Authors:  J Sardos; D McKey; M F Duval; R Malapa; J L Noyer; V Lebot
Journal:  Genome       Date:  2008-11       Impact factor: 2.166

10.  Rate and pattern of mutation at microsatellite loci in maize.

Authors:  Yves Vigouroux; Jennifer S Jaqueth; Yoshihiro Matsuoka; Oscar S Smith; William D Beavis; J Stephen C Smith; John Doebley
Journal:  Mol Biol Evol       Date:  2002-08       Impact factor: 16.240

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  5 in total

1.  Phylogeography of herbarium specimens of asexually propagated paper mulberry [Broussonetia papyrifera (L.) L'Hér. ex Vent. (Moraceae)] reveals genetic diversity across the Pacific.

Authors:  Claudia Payacan; Ximena Moncada; Gloria Rojas; Andrew Clarke; Kuo-Fang Chung; Robin Allaby; Daniela Seelenfreund; Andrea Seelenfreund
Journal:  Ann Bot       Date:  2017-09-01       Impact factor: 4.357

2.  Varietal Dynamics and Yam Agro-Diversity Demonstrate Complex Trajectories Intersecting Farmers' Strategies, Networks, and Disease Experience.

Authors:  Laurent Penet; Denis Cornet; Jean-Marc Blazy; Angela Alleyne; Emilie Barthe; François Bussière; Sébastien Guyader; Claudie Pavis; Dalila Pétro
Journal:  Front Plant Sci       Date:  2016-12-23       Impact factor: 5.753

3.  Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.

Authors:  Gemma Arnau; Ranjana Bhattacharjee; Sheela Mn; Hana Chair; Roger Malapa; Vincent Lebot; Abraham K; Xavier Perrier; Dalila Petro; Laurent Penet; Claudie Pavis
Journal:  PLoS One       Date:  2017-03-29       Impact factor: 3.240

4.  Clonal diversity and estimation of relative clone age: application to agrobiodiversity of yam (Dioscorea rotundata).

Authors:  Nora Scarcelli; Marie Couderc; Mohamed N Baco; Janvier Egah; Yves Vigouroux
Journal:  BMC Plant Biol       Date:  2013-11-13       Impact factor: 4.215

5.  Genetic Diversification and Dispersal of Taro (Colocasia esculenta (L.) Schott).

Authors:  H Chaïr; R E Traore; M F Duval; R Rivallan; A Mukherjee; L M Aboagye; W J Van Rensburg; V Andrianavalona; M A A Pinheiro de Carvalho; F Saborio; M Sri Prana; B Komolong; F Lawac; V Lebot
Journal:  PLoS One       Date:  2016-06-17       Impact factor: 3.240

  5 in total

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