Literature DB >> 21892230

Quantum Chemical Study of the Mechanism of Action of Vitamin K Carboxylase in Solvent.

Sangwook Wu1, Shubin Liu, Charles H Davis, Darrel W Stafford, Lee G Pedersen.   

Abstract

We investigate the post-translational generation of Gla (γ-carboxy glutamic acid) from Glu (glutamic acid) by vitamin K carboxylase (VKC) in solvent. VKC is thought to convert vitamin K, in the vitamin K cycle, to an alkoxide-epoxide form, which then reacts with CO(2) to generate an essential ingredient in blood coagulation, γ-carboxyglutamic acid (Gla). The generation of Gla from Glu is found to be exergenic (-15 kcal/mol) in aqueous solution with the SM6 method. We also produced the free energy profile for this model biochemical process with other solvent methods (polarizable continuum model, dielectric polarizable continuum model) and different dielectric constants. The biological implications are discussed.

Entities:  

Year:  2010        PMID: 21892230      PMCID: PMC3164839          DOI: 10.1002/qua.22740

Source DB:  PubMed          Journal:  Int J Quantum Chem        ISSN: 0020-7608            Impact factor:   2.444


  16 in total

1.  Engineering of a recombinant vitamin K-dependent gamma-carboxylation system with enhanced gamma-carboxyglutamic acid forming capacity: evidence for a functional CXXC redox center in the system.

Authors:  Nadeem Wajih; David C Sane; Susan M Hutson; Reidar Wallin
Journal:  J Biol Chem       Date:  2005-01-07       Impact factor: 5.157

2.  Membrane topology mapping of vitamin K epoxide reductase by in vitro translation/cotranslocation.

Authors:  Jian-Ke Tie; Christopher Nicchitta; Gunnar von Heijne; Darrel W Stafford
Journal:  J Biol Chem       Date:  2005-02-16       Impact factor: 5.157

Review 3.  Molecular basis of vitamin K-dependent gamma-carboxylation.

Authors:  B Furie; B C Furie
Journal:  Blood       Date:  1990-05-01       Impact factor: 22.113

4.  Localization of the affinity peptide-substrate inactivator site on recombinant vitamin K-dependent carboxylase.

Authors:  A Kuliopulos; N P Nelson; M Yamada; C T Walsh; B Furie; B C Furie; D A Roth
Journal:  J Biol Chem       Date:  1994-08-19       Impact factor: 5.157

5.  Mutations in VKORC1 cause warfarin resistance and multiple coagulation factor deficiency type 2.

Authors:  Simone Rost; Andreas Fregin; Vytautas Ivaskevicius; Ernst Conzelmann; Konstanze Hörtnagel; Hans-Joachim Pelz; Knut Lappegard; Erhard Seifried; Inge Scharrer; Edward G D Tuddenham; Clemens R Müller; Tim M Strom; Johannes Oldenburg
Journal:  Nature       Date:  2004-02-05       Impact factor: 49.962

6.  Transmembrane domain interactions and residue proline 378 are essential for proper structure, especially disulfide bond formation, in the human vitamin K-dependent gamma-glutamyl carboxylase.

Authors:  Jian-Ke Tie; Mei-Yan Zheng; Kuang-Ling N Hsiao; Lalith Perera; Darrel W Stafford; David L Straight
Journal:  Biochemistry       Date:  2008-05-23       Impact factor: 3.162

7.  SM6:  A Density Functional Theory Continuum Solvation Model for Calculating Aqueous Solvation Free Energies of Neutrals, Ions, and Solute-Water Clusters.

Authors:  Casey P Kelly; Christopher J Cramer; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2005-11       Impact factor: 6.006

8.  Quantum chemical study of the mechanism of action of vitamin K carboxylase (VKC). IV. Intermediates and transition states.

Authors:  Charles H Davis; David Deerfield Ii; Darrel W Stafford; Lee G Pedersen
Journal:  J Phys Chem A       Date:  2007-05-16       Impact factor: 2.781

9.  Reaction mechanism of the vitamin K-dependent glutamate carboxylase: a computational study.

Authors:  Pedro J Silva; Maria João Ramos
Journal:  J Phys Chem B       Date:  2007-10-13       Impact factor: 2.991

Review 10.  Vitamin K and energy transduction: a base strength amplification mechanism.

Authors:  P Dowd; R Hershline; S W Ham; S Naganathan
Journal:  Science       Date:  1995-09-22       Impact factor: 47.728

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  2 in total

1.  A hetero-dimer model for concerted action of vitamin K carboxylase and vitamin K reductase in vitamin K cycle.

Authors:  Sangwook Wu; Shubin Liu; Charles H Davis; Darrel W Stafford; John D Kulman; Lee G Pedersen
Journal:  J Theor Biol       Date:  2011-03-29       Impact factor: 2.691

Review 2.  Structural and functional insights into enzymes of the vitamin K cycle.

Authors:  J-K Tie; D W Stafford
Journal:  J Thromb Haemost       Date:  2016-01-29       Impact factor: 5.824

  2 in total

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