Literature DB >> 21889996

AFNI: what a long strange trip it's been.

Robert W Cox1.   

Abstract

AFNI is an open source software package for the analysis and display of functional MRI data. It originated in 1994 to meet the specific needs of researchers at the Medical College of Wisconsin, in particular the mapping of activation maps to Talairach-Tournoux space, but has been expanded steadily since then into a wide-ranging set of tool for FMRI data analyses. AFNI was the first platform for real-time 3D functional activation and registration calculations. One of AFNI's main strengths is its flexibility and transparency. In recent years, significant efforts have been made to increase the user-friendliness of AFNI's FMRI processing stream, with the introduction of "super-scripts" to setup the entire analysis, and graphical front-ends for these managers. Published by Elsevier Inc.

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Year:  2011        PMID: 21889996      PMCID: PMC3246532          DOI: 10.1016/j.neuroimage.2011.08.056

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  13 in total

1.  Real-time 3D image registration for functional MRI.

Authors:  R W Cox; A Jesmanowicz
Journal:  Magn Reson Med       Date:  1999-12       Impact factor: 4.668

2.  Automated Talairach atlas labels for functional brain mapping.

Authors:  J L Lancaster; M G Woldorff; L M Parsons; M Liotti; C S Freitas; L Rainey; P V Kochunov; D Nickerson; S A Mikiten; P T Fox
Journal:  Hum Brain Mapp       Date:  2000-07       Impact factor: 5.038

3.  Mapping sources of correlation in resting state FMRI, with artifact detection and removal.

Authors:  Hang Joon Jo; Ziad S Saad; W Kyle Simmons; Lydia A Milbury; Robert W Cox
Journal:  Neuroimage       Date:  2010-04-24       Impact factor: 6.556

4.  A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data.

Authors:  Simon B Eickhoff; Klaas E Stephan; Hartmut Mohlberg; Christian Grefkes; Gereon R Fink; Katrin Amunts; Karl Zilles
Journal:  Neuroimage       Date:  2005-05-01       Impact factor: 6.556

5.  Time course EPI of human brain function during task activation.

Authors:  P A Bandettini; E C Wong; R S Hinks; R S Tikofsky; J S Hyde
Journal:  Magn Reson Med       Date:  1992-06       Impact factor: 4.668

6.  AFNI: software for analysis and visualization of functional magnetic resonance neuroimages.

Authors:  R W Cox
Journal:  Comput Biomed Res       Date:  1996-06

7.  Toward discovery science of human brain function.

Authors:  Bharat B Biswal; Maarten Mennes; Xi-Nian Zuo; Suril Gohel; Clare Kelly; Steve M Smith; Christian F Beckmann; Jonathan S Adelstein; Randy L Buckner; Stan Colcombe; Anne-Marie Dogonowski; Monique Ernst; Damien Fair; Michelle Hampson; Matthew J Hoptman; James S Hyde; Vesa J Kiviniemi; Rolf Kötter; Shi-Jiang Li; Ching-Po Lin; Mark J Lowe; Clare Mackay; David J Madden; Kristoffer H Madsen; Daniel S Margulies; Helen S Mayberg; Katie McMahon; Christopher S Monk; Stewart H Mostofsky; Bonnie J Nagel; James J Pekar; Scott J Peltier; Steven E Petersen; Valentin Riedl; Serge A R B Rombouts; Bart Rypma; Bradley L Schlaggar; Sein Schmidt; Rachael D Seidler; Greg J Siegle; Christian Sorg; Gao-Jun Teng; Juha Veijola; Arno Villringer; Martin Walter; Lihong Wang; Xu-Chu Weng; Susan Whitfield-Gabrieli; Peter Williamson; Christian Windischberger; Yu-Feng Zang; Hong-Ying Zhang; F Xavier Castellanos; Michael P Milham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

8.  Real-time functional magnetic resonance imaging.

Authors:  R W Cox; A Jesmanowicz; J S Hyde
Journal:  Magn Reson Med       Date:  1995-02       Impact factor: 4.668

9.  Processing strategies for time-course data sets in functional MRI of the human brain.

Authors:  P A Bandettini; A Jesmanowicz; E C Wong; J S Hyde
Journal:  Magn Reson Med       Date:  1993-08       Impact factor: 4.668

10.  Segmentation priors from local image properties: without using bias field correction, location-based templates, or registration.

Authors:  Andrej Vovk; Robert W Cox; Janez Stare; Dusan Suput; Ziad S Saad
Journal:  Neuroimage       Date:  2010-12-10       Impact factor: 6.556

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  118 in total

1.  Relation between changes in neural responsivity and reductions in desire to eat high-calorie foods following gastric bypass surgery.

Authors:  C N Ochner; E Stice; E Hutchins; L Afifi; A Geliebter; J Hirsch; J Teixeira
Journal:  Neuroscience       Date:  2012-02-24       Impact factor: 3.590

2.  Imaging Agonist-Induced D2/D3 Receptor Desensitization and Internalization In Vivo with PET/fMRI.

Authors:  Christin Y Sander; Jacob M Hooker; Ciprian Catana; Bruce R Rosen; Joseph B Mandeville
Journal:  Neuropsychopharmacology       Date:  2015-09-21       Impact factor: 7.853

3.  Open Environment for Multimodal Interactive Connectivity Visualization and Analysis.

Authors:  Paul A Taylor; Gang Chen; Robert W Cox; Ziad S Saad
Journal:  Brain Connect       Date:  2015-11-10

4.  Ultra-fast magnetic resonance encephalography of physiological brain activity - Glymphatic pulsation mechanisms?

Authors:  Vesa Kiviniemi; Xindi Wang; Vesa Korhonen; Tuija Keinänen; Timo Tuovinen; Joonas Autio; Pierre LeVan; Shella Keilholz; Yu-Feng Zang; Jürgen Hennig; Maiken Nedergaard
Journal:  J Cereb Blood Flow Metab       Date:  2015-12-21       Impact factor: 6.200

5.  File-based localization of numerical perturbations in data analysis pipelines.

Authors:  Ali Salari; Gregory Kiar; Lindsay Lewis; Alan C Evans; Tristan Glatard
Journal:  Gigascience       Date:  2020-12-02       Impact factor: 6.524

6.  The effect of meditation on brain structure: cortical thickness mapping and diffusion tensor imaging.

Authors:  Do-Hyung Kang; Hang Joon Jo; Wi Hoon Jung; Sun Hyung Kim; Ye-Ha Jung; Chi-Hoon Choi; Ul Soon Lee; Seung Chan An; Joon Hwan Jang; Jun Soo Kwon
Journal:  Soc Cogn Affect Neurosci       Date:  2012-05-07       Impact factor: 3.436

Review 7.  Medical image file formats.

Authors:  Michele Larobina; Loredana Murino
Journal:  J Digit Imaging       Date:  2014-04       Impact factor: 4.056

8.  Associations between fractional anisotropy and problematic alcohol use in juvenile justice-involved adolescents.

Authors:  Rachel E Thayer; Tiffany J Callahan; Barbara J Weiland; Kent E Hutchison; Angela D Bryan
Journal:  Am J Drug Alcohol Abuse       Date:  2013-11       Impact factor: 3.829

9.  Functionally dissociable influences on learning rate in a dynamic environment.

Authors:  Joseph T McGuire; Matthew R Nassar; Joshua I Gold; Joseph W Kable
Journal:  Neuron       Date:  2014-11-19       Impact factor: 17.173

10.  Early-Emerging Sulcal Patterns Are Atypical in Fetuses with Congenital Heart Disease.

Authors:  Cynthia M Ortinau; Caitlin K Rollins; Ali Gholipour; Hyuk Jin Yun; Mackenzie Marshall; Borjan Gagoski; Onur Afacan; Kevin Friedman; Wayne Tworetzky; Simon K Warfield; Jane W Newburger; Terrie E Inder; P Ellen Grant; Kiho Im
Journal:  Cereb Cortex       Date:  2019-07-22       Impact factor: 5.357

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