Literature DB >> 21888896

Crystal structure of the Cys2His2-type zinc finger domain of human DPF2.

Wei Zhang1, Chao Xu, Chuanbing Bian, Wolfram Tempel, Lissete Crombet, Farrell MacKenzie, Jinrong Min, Zhonglai Liu, Chao Qi.   

Abstract

DPF2 is an evolutionary highly conserved member of the d4-protein family characterized by an N-terminal 2/3 domain, a C2H2-type zinc finger (ZF), and a C-terminal tandem PHD zinc finger. DPF2 is identified as a transcription factor and may be related with some cancers in human. Here, we report the crystal structure of the C2H2-type zinc finger domain of human DPF2 with a canonical C2H2 fold, which contains two beta strands and one alpha helix. Several conserved residues, including Lys207, Lys216 and Arg217, constitute a positively charged surface in C2H2 domain, which implicates that it has the potential to bind DNA. The side chains of the residues Y209, C211, C214, K216, Y218, L224, H227 and H232 form the hydrophobic core of C2H2 domain, which indicates a potential-binding surface in the human DPF2.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21888896     DOI: 10.1016/j.bbrc.2011.08.043

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  9 in total

1.  Mutations in the BAF-Complex Subunit DPF2 Are Associated with Coffin-Siris Syndrome.

Authors:  Georgia Vasileiou; Silvia Vergarajauregui; Sabine Endele; Bernt Popp; Christian Büttner; Arif B Ekici; Marion Gerard; Nuria C Bramswig; Beate Albrecht; Jill Clayton-Smith; Jenny Morton; Susan Tomkins; Karen Low; Astrid Weber; Maren Wenzel; Janine Altmüller; Yun Li; Bernd Wollnik; George Hoganson; Maria-Renée Plona; Megan T Cho; Christian T Thiel; Hermann-Josef Lüdecke; Tim M Strom; Eduardo Calpena; Andrew O M Wilkie; Dagmar Wieczorek; Felix B Engel; André Reis
Journal:  Am J Hum Genet       Date:  2018-02-08       Impact factor: 11.025

Review 2.  The Role of Zinc Finger Proteins in Various Oral Conditions.

Authors:  Rupali Agnihotri; Sumit Gaur
Journal:  ScientificWorldJournal       Date:  2022-04-15

3.  Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease.

Authors:  Lan Lin; Juw Won Park; Shyam Ramachandran; Yida Zhang; Yu-Ting Tseng; Shihao Shen; Henry J Waldvogel; Maurice A Curtis; Richard L M Faull; Juan C Troncoso; Olga Pletnikova; Christopher A Ross; Beverly L Davidson; Yi Xing
Journal:  Hum Mol Genet       Date:  2016-07-04       Impact factor: 6.150

4.  A genome-wide detection of copy number variations using SNP genotyping arrays in swine.

Authors:  Jiying Wang; Jicai Jiang; Weixuan Fu; Li Jiang; Xiangdong Ding; Jian-Feng Liu; Qin Zhang
Journal:  BMC Genomics       Date:  2012-06-22       Impact factor: 3.969

5.  Challenges in whole exome sequencing: an example from hereditary deafness.

Authors:  Asli Sirmaci; Yvonne J K Edwards; Hatice Akay; Mustafa Tekin
Journal:  PLoS One       Date:  2012-02-21       Impact factor: 3.240

6.  Structure solution of DNA-binding proteins and complexes with ARCIMBOLDO libraries.

Authors:  Kevin Pröpper; Kathrin Meindl; Massimo Sammito; Birger Dittrich; George M Sheldrick; Ehmke Pohl; Isabel Usón
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-05-30

7.  Intrinsic Disorder of the BAF Complex: Roles in Chromatin Remodeling and Disease Development.

Authors:  Nashwa El Hadidy; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2019-10-23       Impact factor: 5.923

8.  Revealing Intrinsic Disorder and Aggregation Properties of the DPF3a Zinc Finger Protein.

Authors:  Julien Mignon; Denis Mottet; Giulia Verrillo; André Matagne; Eric A Perpète; Catherine Michaux
Journal:  ACS Omega       Date:  2021-07-13

Review 9.  Zinc-finger proteins in health and disease.

Authors:  Matteo Cassandri; Artem Smirnov; Flavia Novelli; Consuelo Pitolli; Massimiliano Agostini; Michal Malewicz; Gerry Melino; Giuseppe Raschellà
Journal:  Cell Death Discov       Date:  2017-11-13
  9 in total

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