Literature DB >> 21885467

Deciphering the genetic basis of animal domestication.

Pamela Wiener1, Samantha Wilkinson.   

Abstract

Genomic technologies for livestock and companion animal species have revolutionized the study of animal domestication, allowing an increasingly detailed description of the genetic changes accompanying domestication and breed development. This review describes important recent results derived from the application of population and quantitative genetic approaches to the study of genetic changes in the major domesticated species. These include findings of regions of the genome that show between-breed differentiation, evidence of selective sweeps within individual genomes and signatures of demographic events. Particular attention is focused on the study of the genetics of behavioural traits and the implications for domestication. Despite the operation of severe bottlenecks, high levels of inbreeding and intensive selection during the history of domestication, most domestic animal species are genetically diverse. Possible explanations for this phenomenon are discussed. The major insights from the surveyed studies are highlighted and directions for future study are suggested.

Mesh:

Year:  2011        PMID: 21885467      PMCID: PMC3169034          DOI: 10.1098/rspb.2011.1376

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  76 in total

1.  Cattle demographic history modelled from autosomal sequence variation.

Authors:  Caitriona Murray; Emilia Huerta-Sanchez; Fergal Casey; Daniel G Bradley
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-27       Impact factor: 6.237

2.  Hereditary cutaneous mucinosis in shar pei dogs is associated with increased hyaluronan synthase-2 mRNA transcription by cultured dermal fibroblasts.

Authors:  Giordana Zanna; María J Docampo; Dolors Fondevila; Mar Bardagí; Anna Bassols; Lluís Ferrer
Journal:  Vet Dermatol       Date:  2009-10       Impact factor: 1.589

3.  Whole-genome resequencing reveals loci under selection during chicken domestication.

Authors:  Carl-Johan Rubin; Michael C Zody; Jonas Eriksson; Jennifer R S Meadows; Ellen Sherwood; Matthew T Webster; Lin Jiang; Max Ingman; Ted Sharpe; Sojeong Ka; Finn Hallböök; Francois Besnier; Orjan Carlborg; Bertrand Bed'hom; Michèle Tixier-Boichard; Per Jensen; Paul Siegel; Kerstin Lindblad-Toh; Leif Andersson
Journal:  Nature       Date:  2010-03-10       Impact factor: 49.962

4.  Genotype at the PMEL17 locus affects social and explorative behaviour in chickens.

Authors:  A-C Karlsson; S Kerje; L Andersson; P Jensen
Journal:  Br Poult Sci       Date:  2010-04       Impact factor: 2.095

5.  Tracking footprints of artificial selection in the dog genome.

Authors:  Joshua M Akey; Alison L Ruhe; Dayna T Akey; Aaron K Wong; Caitlin F Connelly; Jennifer Madeoy; Thomas J Nicholas; Mark W Neff
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-11       Impact factor: 11.205

6.  An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs.

Authors:  Heidi G Parker; Bridgett M VonHoldt; Pascale Quignon; Elliott H Margulies; Stephanie Shao; Dana S Mosher; Tyrone C Spady; Abdel Elkahloun; Michele Cargill; Paul G Jones; Cheryl L Maslen; Gregory M Acland; Nathan B Sutter; Keiichi Kuroki; Carlos D Bustamante; Robert K Wayne; Elaine A Ostrander
Journal:  Science       Date:  2009-07-16       Impact factor: 47.728

7.  The pattern of linkage disequilibrium in German Holstein cattle.

Authors:  S Qanbari; E C G Pimentel; J Tetens; G Thaller; P Lichtner; A R Sharifi; H Simianer
Journal:  Anim Genet       Date:  2010-01-03       Impact factor: 3.169

8.  Integrating Y-chromosome, mitochondrial, and autosomal data to analyze the origin of pig breeds.

Authors:  O Ramírez; A Ojeda; A Tomàs; D Gallardo; L S Huang; J M Folch; A Clop; A Sánchez; B Badaoui; O Hanotte; O Galman-Omitogun; S M Makuza; H Soto; J Cadillo; L Kelly; I C Cho; S Yeghoyan; M Pérez-Enciso; M Amills
Journal:  Mol Biol Evol       Date:  2009-06-17       Impact factor: 16.240

9.  Assessment of selection mapping near the myostatin gene (GDF-8) in cattle.

Authors:  P Wiener; B Gutiérrez-Gil
Journal:  Anim Genet       Date:  2009-05-06       Impact factor: 3.169

10.  The genome response to artificial selection: a case study in dairy cattle.

Authors:  Laurence Flori; Sébastien Fritz; Florence Jaffrézic; Mekki Boussaha; Ivo Gut; Simon Heath; Jean-Louis Foulley; Mathieu Gautier
Journal:  PLoS One       Date:  2009-08-12       Impact factor: 3.240

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  29 in total

1.  Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

Authors:  Lingyang Xu; Derek M Bickhart; John B Cole; Steven G Schroeder; Jiuzhou Song; Curtis P Van Tassell; Tad S Sonstegard; George E Liu
Journal:  Mol Biol Evol       Date:  2014-11-26       Impact factor: 16.240

2.  The Temporal Dynamics of Background Selection in Nonequilibrium Populations.

Authors:  Raul Torres; Markus G Stetter; Ryan D Hernandez; Jeffrey Ross-Ibarra
Journal:  Genetics       Date:  2020-02-18       Impact factor: 4.562

3.  Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.

Authors:  Gabriel Renaud; Kristian Hanghøj; Thorfinn Sand Korneliussen; Eske Willerslev; Ludovic Orlando
Journal:  Genetics       Date:  2019-05-14       Impact factor: 4.562

4.  The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves.

Authors:  Ilana Janowitz Koch; Michelle M Clark; Michael J Thompson; Kerry A Deere-Machemer; Jun Wang; Lionel Duarte; Gitanjali E Gnanadesikan; Eskender L McCoy; Liudmilla Rubbi; Daniel R Stahler; Matteo Pellegrini; Elaine A Ostrander; Robert K Wayne; Janet S Sinsheimer; Bridgett M vonHoldt
Journal:  Mol Ecol       Date:  2016-01-18       Impact factor: 6.185

5.  Genetic influences on brain gene expression in rats selected for tameness and aggression.

Authors:  Henrike O Heyne; Susann Lautenschläger; Ronald Nelson; François Besnier; Maxime Rotival; Alexander Cagan; Rimma Kozhemyakina; Irina Z Plyusnina; Lyudmila Trut; Örjan Carlborg; Enrico Petretto; Leonid Kruglyak; Svante Pääbo; Torsten Schöneberg; Frank W Albert
Journal:  Genetics       Date:  2014-09-03       Impact factor: 4.562

6.  Global population genetic structure and demographic trajectories of the black soldier fly, Hermetia illucens.

Authors:  Cengiz Kaya; Tomas N Generalovic; Gunilla Ståhls; Martin Hauser; Ana C Samayoa; Carlos G Nunes-Silva; Heather Roxburgh; Jens Wohlfahrt; Ebenezer A Ewusie; Marc Kenis; Yupa Hanboonsong; Jesus Orozco; Nancy Carrejo; Satoshi Nakamura; Laura Gasco; Santos Rojo; Chrysantus M Tanga; Rudolf Meier; Clint Rhode; Christine J Picard; Chris D Jiggins; Florian Leiber; Jeffery K Tomberlin; Martin Hasselmann; Wolf U Blanckenhorn; Martin Kapun; Christoph Sandrock
Journal:  BMC Biol       Date:  2021-05-05       Impact factor: 7.431

7.  Genome sequences of wild and domestic bactrian camels.

Authors:  Zhen Wang; Guohui Ding; Gangliang Chen; Yamin Sun; Zhihong Sun; Heping Zhang; Lei Wang; Surong Hasi; Yan Zhang; Jianmei Li; Yixiang Shi; Ze Xu; Chuan He; Siriguleng Yu; Shengdi Li; Wenbin Zhang; Mijiddorj Batmunkh; Batsukh Ts; Shirzana Bat-Ireedui; Hongwei Gao; Banzragch Baysgalan; Qing Li; Zhiling Jia; Zhaoxia Wang; Juan Wang; Lei Pan; Yongcan Chen; Yaichil Ganerdene; Tuya Liu; Minhui Cao; Fei He; A Zha-ti; Guangyong Zheng; Feng Qiu; Zikui Sun; Lele Zhao; Wenjing Zhao; Baohong Liu; Chao Li; Yunqin Chen; Xiaoyan Tang; Chunyan Guo; Wei Liu; Liang Ming; Aiying Cui; Yi Li; Junhui Gao; Jing Li; Shen Niu; Tao Sun; Zhengxiao Zhai; Min Zhang; Chen Chen; Tunteg Baldan; Tuman Bayaer; Yixue Li; He Meng
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

8.  Signatures of diversifying selection in European pig breeds.

Authors:  Samantha Wilkinson; Zen H Lu; Hendrik-Jan Megens; Alan L Archibald; Chris Haley; Ian J Jackson; Martien A M Groenen; Richard P M A Crooijmans; Rob Ogden; Pamela Wiener
Journal:  PLoS Genet       Date:  2013-04-25       Impact factor: 5.917

Review 9.  How does adaptation sweep through the genome? Insights from long-term selection experiments.

Authors:  Molly K Burke
Journal:  Proc Biol Sci       Date:  2012-07-25       Impact factor: 5.349

10.  A genome-wide scan for signatures of directional selection in domesticated pigs.

Authors:  Sunjin Moon; Tae-Hun Kim; Kyung-Tai Lee; Woori Kwak; Taeheon Lee; Si-Woo Lee; Myung-Jick Kim; Kyuho Cho; Namshin Kim; Won-Hyong Chung; Samsun Sung; Taesung Park; Seoae Cho; Martien Am Groenen; Rasmus Nielsen; Yuseob Kim; Heebal Kim
Journal:  BMC Genomics       Date:  2015-02-25       Impact factor: 3.969

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