Literature DB >> 21873492

Effects on transcription of mutations in ygjD, yeaZ, and yjeE genes, which are involved in a universal tRNA modification in Escherichia coli.

Chika Hashimoto1, Kohei Sakaguchi, Yuko Taniguchi, Hirofumi Honda, Taku Oshima, Naotake Ogasawara, Jun-Ichi Kato.   

Abstract

The Escherichia coli ygjD gene is critical for the universal tRNA modification N(6)-threonylcarbamoyladenosine, together with two other essential genes, yeaZ and yjeE. This study showed that the transcription of the thr and ilv operons in ygjD mutants was increased through the inhibition of transcription attenuation and that dnaG transcription was reduced.

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Year:  2011        PMID： 21873492      PMCID： PMC3194906          DOI： 10.1128/JB.05733-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  17 in total

Review 1.  'Conserved hypothetical' proteins: prioritization of targets for experimental study.

Authors:  Michael Y Galperin; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2004-10-12       Impact factor: 16.971

2.  The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A.

Authors:  Madhusudhan Srinivasan; Preeti Mehta; Yao Yu; Evelyn Prugar; Eugene V Koonin; A Wali Karzai; Rolf Sternglanz
Journal:  EMBO J       Date:  2010-12-24       Impact factor: 11.598

3.  Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

Authors:  Masayuki Hashimoto; Toshiharu Ichimura; Hiroshi Mizoguchi; Kimie Tanaka; Kazuyuki Fujimitsu; Kenji Keyamura; Tomotake Ote; Takehiro Yamakawa; Yukiko Yamazaki; Hideo Mori; Tsutomu Katayama; Jun-ichi Kato
Journal:  Mol Microbiol       Date:  2005-01       Impact factor: 3.501

4.  A genome-wide screen identifies the evolutionarily conserved KEOPS complex as a telomere regulator.

Authors:  Michael Downey; Rebecca Houlsworth; Laura Maringele; Adrienne Rollie; Marc Brehme; Sarah Galicia; Sandrine Guillard; Melanie Partington; Mikhajlo K Zubko; Nevan J Krogan; Andrew Emili; Jack F Greenblatt; Lea Harrington; David Lydall; Daniel Durocher
Journal:  Cell       Date:  2006-03-24       Impact factor: 41.582

5.  A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification.

Authors:  Basma El Yacoubi; Isabelle Hatin; Christopher Deutsch; Tamer Kahveci; Jean-Pierre Rousset; Dirk Iwata-Reuyl; Alexey G Murzin; Valérie de Crécy-Lagard
Journal:  EMBO J       Date:  2011-02-01       Impact factor: 11.598

6.  Conserved network of proteins essential for bacterial viability.

Authors:  Jennifer I Handford; Bérengère Ize; Grant Buchanan; Gareth P Butland; Jack Greenblatt; Andrew Emili; Tracy Palmer
Journal:  J Bacteriol       Date:  2009-04-17       Impact factor: 3.490

7.  Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome.

Authors:  Jun-ichi Kato; Masayuki Hashimoto
Journal:  Methods Mol Biol       Date:  2008

8.  Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance.

Authors:  Jacques Oberto; Norman Breuil; Arnaud Hecker; Francesca Farina; Céline Brochier-Armanet; Emmanuel Culetto; Patrick Forterre
Journal:  Nucleic Acids Res       Date:  2009-07-03       Impact factor: 16.971

9.  Construction of consecutive deletions of the Escherichia coli chromosome.

Authors:  Jun-ichi Kato; Masayuki Hashimoto
Journal:  Mol Syst Biol       Date:  2007-08-14       Impact factor: 11.429

10.  An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro.

Authors:  Arnaud Hecker; Nicolas Leulliot; Danièle Gadelle; Marc Graille; Anthony Justome; Pierre Dorlet; Céline Brochier; Sophie Quevillon-Cheruel; Eric Le Cam; Herman van Tilbeurgh; Patrick Forterre
Journal:  Nucleic Acids Res       Date:  2007-08-30       Impact factor: 16.971
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  11 in total

1.  Deinococcus radiodurans YgjD and YeaZ are involved in the repair of DNA cross-links.

Authors:  Takefumi Onodera; Katsuya Satoh; Toshihiro Ohta; Issay Narumi
Journal:  Extremophiles       Date:  2012-12-14       Impact factor: 2.395

2.  Biosynthesis of threonylcarbamoyl adenosine (t6A), a universal tRNA nucleoside.

Authors:  Christopher Deutsch; Basma El Yacoubi; Valérie de Crécy-Lagard; Dirk Iwata-Reuyl
Journal:  J Biol Chem       Date:  2012-02-29       Impact factor: 5.157

3.  Determination of essentiality and regulatory function of staphylococcal YeaZ in branched-chain amino acid biosynthesis.

Authors:  Ting Lei; Junshu Yang; Yinduo Ji
Journal:  Virulence       Date:  2015       Impact factor: 5.882

4.  A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification.

Authors:  Kenjyo Miyauchi; Satoshi Kimura; Tsutomu Suzuki
Journal:  Nat Chem Biol       Date:  2012-12-16       Impact factor: 15.040

5.  Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria.

Authors:  Patrick C Thiaville; Basma El Yacoubi; Caroline Köhrer; Jennifer J Thiaville; Chris Deutsch; Dirk Iwata-Reuyl; Jo Marie Bacusmo; Jean Armengaud; Yoshitaka Bessho; Collin Wetzel; Xiaoyu Cao; Patrick A Limbach; Uttam L RajBhandary; Valérie de Crécy-Lagard
Journal:  Mol Microbiol       Date:  2015-10-07       Impact factor: 3.501

6.  The essentiality of staphylococcal Gcp is independent of its repression of branched-chain amino acids biosynthesis.

Authors:  Ting Lei; Junshu Yang; Li Zheng; Todd Markowski; Bruce A Witthuhn; Yinduo Ji
Journal:  PLoS One       Date:  2012-10-04       Impact factor: 3.240

7.  Patterns of evolutionary conservation of essential genes correlate with their compensability.

Authors:  Tobias Bergmiller; Martin Ackermann; Olin K Silander
Journal:  PLoS Genet       Date:  2012-06-28       Impact factor: 5.917

8.  How much can we learn about the function of bacterial rRNA modification by mining large-scale experimental datasets?

Authors:  Petr V Sergiev; Anna Y Golovina; Olga V Sergeeva; Ilya A Osterman; Mikhail V Nesterchuk; Alexey A Bogdanov; Olga A Dontsova
Journal:  Nucleic Acids Res       Date:  2012-03-12       Impact factor: 16.971

9.  The Drosophila EKC/KEOPS complex: roles in protein synthesis homeostasis and animal growth.

Authors:  Diego Rojas-Benítez; Consuelo Ibar; Álvaro Glavic
Journal:  Fly (Austin)       Date:  2013-06-19       Impact factor: 2.160

10.  A genetic investigation of the KEOPS complex in halophilic Archaea.

Authors:  Adit Naor; Patrick C Thiaville; Neta Altman-Price; Ifat Cohen-Or; Thorsten Allers; Valérie de Crécy-Lagard; Uri Gophna
Journal:  PLoS One       Date:  2012-08-23       Impact factor: 3.240
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