Literature DB >> 21870257

Affinity-based assays for the identification and quantitative evaluation of noncovalent poly(ADP-ribose)-binding proteins.

Jean-Philippe Gagné1, Jean-François Haince, Emilie Pic, Guy G Poirier.   

Abstract

Poly(ADP-ribose) polymerases have been linked to several cellular functions, most of which being mediated through the dynamics of poly(ADP-ribose) (pADPr). In several pathways, pADPr is the effector molecule that regulates cellular signaling and dictates biological outcomes. pAPDr is a central molecule that is capable of promoting both cell survival through the maintenance of genome integrity and cell death that occurs by way of a signal-mediated apoptotic-like process. Thus, interactions with pADPr are extremely important in bringing about the balanced regulation that controls cell fate. Further clues regarding these functions are emerging from a growing list of proteins with which pADPr interacts. Here, we describe the current approaches for investigating noncovalent protein interactions with pADPr.

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Year:  2011        PMID: 21870257      PMCID: PMC4399804          DOI: 10.1007/978-1-61779-270-0_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  59 in total

1.  Poly(ADP-ribose) (PAR) polymer is a death signal.

Authors:  Shaida A Andrabi; No Soo Kim; Seong-Woon Yu; Hongmin Wang; David W Koh; Masayuki Sasaki; Judith A Klaus; Takashi Otsuka; Zhizheng Zhang; Raymond C Koehler; Patricia D Hurn; Guy G Poirier; Valina L Dawson; Ted M Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

2.  PARP-3 is a mono-ADP-ribosylase that activates PARP-1 in the absence of DNA.

Authors:  Olga Loseva; Ann-Sofie Jemth; Helen E Bryant; Herwig Schüler; Lari Lehtiö; Tobias Karlberg; Thomas Helleday
Journal:  J Biol Chem       Date:  2010-01-11       Impact factor: 5.157

3.  Characterization of polymers of adenosine diphosphate ribose generated in vitro and in vivo.

Authors:  R Alvarez-Gonzalez; M K Jacobson
Journal:  Biochemistry       Date:  1987-06-02       Impact factor: 3.162

4.  Monoclonal antibodies to poly(adenosine diphosphate ribose) recognize different structures.

Authors:  H Kawamitsu; H Hoshino; H Okada; M Miwa; H Momoi; T Sugimura
Journal:  Biochemistry       Date:  1984-07-31       Impact factor: 3.162

5.  Spectral analysis of the conformation of polyadenosine diphosphoribose. Evidence indicating secondary structure.

Authors:  T Minaga; E Kun
Journal:  J Biol Chem       Date:  1983-01-25       Impact factor: 5.157

6.  PARP1-dependent kinetics of recruitment of MRE11 and NBS1 proteins to multiple DNA damage sites.

Authors:  Jean-François Haince; Darin McDonald; Amélie Rodrigue; Ugo Déry; Jean-Yves Masson; Michael J Hendzel; Guy G Poirier
Journal:  J Biol Chem       Date:  2007-11-19       Impact factor: 5.157

7.  Poly(ADP-ribose)-binding zinc finger motifs in DNA repair/checkpoint proteins.

Authors:  Ivan Ahel; Dragana Ahel; Takahiro Matsusaka; Allison J Clark; Jonathon Pines; Simon J Boulton; Stephen C West
Journal:  Nature       Date:  2008-01-03       Impact factor: 49.962

8.  DNA fragmentation and NAD depletion. Their relation to the turnover of endogenous mono(ADP-ribosyl) and poly(ADP-ribosyl) proteins.

Authors:  K Wielckens; A Schmidt; E George; R Bredehorst; H Hilz
Journal:  J Biol Chem       Date:  1982-11-10       Impact factor: 5.157

9.  A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation.

Authors:  Gyula Timinszky; Susanne Till; Paul O Hassa; Michael Hothorn; Georg Kustatscher; Bianca Nijmeijer; Julien Colombelli; Matthias Altmeyer; Ernst H K Stelzer; Klaus Scheffzek; Michael O Hottiger; Andreas G Ladurner
Journal:  Nat Struct Mol Biol       Date:  2009-08-13       Impact factor: 15.369

Review 10.  Sensing NAD metabolites through macro domains.

Authors:  Susanne Till; Andreas G Ladurner
Journal:  Front Biosci (Landmark Ed)       Date:  2009-01-01
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  7 in total

1.  Quantitative proteomics profiling of the poly(ADP-ribose)-related response to genotoxic stress.

Authors:  Jean-Philippe Gagné; Emilie Pic; Maxim Isabelle; Jana Krietsch; Chantal Ethier; Eric Paquet; Isabelle Kelly; Michel Boutin; Kyung-Mee Moon; Leonard J Foster; Guy G Poirier
Journal:  Nucleic Acids Res       Date:  2012-06-04       Impact factor: 16.971

Review 2.  Reprogramming cellular events by poly(ADP-ribose)-binding proteins.

Authors:  Jana Krietsch; Michèle Rouleau; Émilie Pic; Chantal Ethier; Ted M Dawson; Valina L Dawson; Jean-Yves Masson; Guy G Poirier; Jean-Philippe Gagné
Journal:  Mol Aspects Med       Date:  2012-12-23

3.  RBM45 competes with HDAC1 for binding to FUS in response to DNA damage.

Authors:  Juanjuan Gong; Min Huang; Fengli Wang; Xiaolu Ma; Hongmei Liu; Yingfeng Tu; Lingyu Xing; Xuefei Zhu; Hui Zheng; Junjie Fang; Xiaoling Li; Qiaochu Wang; Jiuqiang Wang; Zhongshuai Sun; Xi Wang; Yun Wang; Caixia Guo; Tie-Shan Tang
Journal:  Nucleic Acids Res       Date:  2017-12-15       Impact factor: 16.971

4.  The Herpesvirus Nuclear Egress Complex Component, UL31, Can Be Recruited to Sites of DNA Damage Through Poly-ADP Ribose Binding.

Authors:  Maxwell R Sherry; Thomas J M Hay; Michael A Gulak; Arash Nassiri; Renée L Finnen; Bruce W Banfield
Journal:  Sci Rep       Date:  2017-05-15       Impact factor: 4.379

5.  FH535 Suppresses Osteosarcoma Growth In Vitro and Inhibits Wnt Signaling through Tankyrases.

Authors:  Carl T Gustafson; Tewodros Mamo; Kristen L Shogren; Avudaiappan Maran; Michael J Yaszemski
Journal:  Front Pharmacol       Date:  2017-05-23       Impact factor: 5.810

6.  PARP activation regulates the RNA-binding protein NONO in the DNA damage response to DNA double-strand breaks.

Authors:  Jana Krietsch; Marie-Christine Caron; Jean-Philippe Gagné; Chantal Ethier; Julien Vignard; Michel Vincent; Michèle Rouleau; Michael J Hendzel; Guy G Poirier; Jean-Yves Masson
Journal:  Nucleic Acids Res       Date:  2012-08-31       Impact factor: 16.971

Review 7.  Readers of poly(ADP-ribose): designed to be fit for purpose.

Authors:  Federico Teloni; Matthias Altmeyer
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

  7 in total

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