Literature DB >> 21869468

Intergenic spacer length variants in Old Portuguese bread wheat cultivars.

Ana Carvalho1, Henrique Guedes-Pinto, José Lima-Brito.   

Abstract

The intergenic spacer of the ribosomal DNA is highly variable, but is location specific in the nucleolar organizer region of the chromosomes. This study provides an event of high level of polymorphism / size variation and occurrence of 14 unique phenotypes in 48 landraces of Portuguese bread wheat cultivars for IGS-amplified products obtained by PCR-RFLP technique performed with TaqI. The attendant IGS polymorphism has been used to deduce affinities between landraces. Some of the high molecular weight IGS allelic variants were also probed for their chromosomal localization by sequential silver nitrate staining and fluorescence in situ hybridization. However, only the intergenic spacer allelic variant of 3.1 kb could be successfully hybridized, and was observed to be physically located on the chromosome pair 1B in the NOR loci of the cultivar 'Magueija'.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21869468     DOI: 10.1007/s12041-011-0051-4

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  25 in total

Review 1.  rRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch.

Authors:  Sasha Preuss; Craig S Pikaard
Journal:  Biochim Biophys Acta       Date:  2007-03-12

2.  Variation in the nuclear ribosomal DNA internal transcribed spacer (ITS) region of Pinus rzedowskii revealed by PCR-RFLP.

Authors:  A Quijada; A Liston; P Delgado; A Vázquez-Lobo; E R Alvarez-Buylla
Journal:  Theor Appl Genet       Date:  1998-03       Impact factor: 5.699

3.  Structure and evolution of the intergenic region in a ribosomal DNA repeat unit of wheat.

Authors:  R F Barker; N P Harberd; M G Jarvis; R B Flavell
Journal:  J Mol Biol       Date:  1988-05-05       Impact factor: 5.469

4.  Development-dependent inheritance of 5-azacytidine-induced epimutations in triticale: analysis of rDNA expression patterns.

Authors:  L Amado; R Abranches; N Neves; W Viegas
Journal:  Chromosome Res       Date:  1997-11       Impact factor: 5.239

5.  Phylogenetic relationships of 10 grass species: an assessment of phylogenetic utility of the internal transcribed spacer region in nuclear ribosomal DNA in monocots.

Authors:  C Hsiao; N J Chatterton; K H Asay; K B Jensen
Journal:  Genome       Date:  1994-02       Impact factor: 2.166

6.  Cloning and characterization of ribosomal RNA genes from wheat and barley.

Authors:  W L Gerlach; J R Bedbrook
Journal:  Nucleic Acids Res       Date:  1979-12-11       Impact factor: 16.971

7.  Intra-individual and intra-species heterogeneity in nuclear rDNA ITS region of Vigna species from subgenus Ceratotropis.

Authors:  Ajay Saini; Sreenivasulu K Reddy; Narendra Jawali
Journal:  Genet Res (Camb)       Date:  2008-08       Impact factor: 1.588

8.  Use of single-primer DNA amplifications in genetic studies of peanut (Arachis hypogaea L.).

Authors:  T Halward; T Stalker; E LaRue; G Kochert
Journal:  Plant Mol Biol       Date:  1992-01       Impact factor: 4.076

9.  Dynamic changes in the distribution of a satellite homologous to intergenic 26-18S rDNA spacer in the evolution of Nicotiana.

Authors:  K Y Lim; K Skalicka; B Koukalova; R A Volkov; R Matyasek; V Hemleben; A R Leitch; A Kovarik
Journal:  Genetics       Date:  2004-04       Impact factor: 4.562

10.  Interplay of ribosomal DNA loci in nucleolar dominance: dominant NORs are up-regulated by chromatin dynamics in the wheat-rye system.

Authors:  Manuela Silva; H Sofia Pereira; Miguel Bento; Ana Paula Santos; Peter Shaw; Margarida Delgado; Nuno Neves; Wanda Viegas
Journal:  PLoS One       Date:  2008-12-02       Impact factor: 3.240

View more
  7 in total

1.  Polymorphism of the simple sequence repeat (AAC)5 in the nucleolar chromosomes of Old Portuguese wheat cultivars.

Authors:  Ana Carvalho; Henrique Guedes-Pinto; José Lima-Brito
Journal:  J Genet       Date:  2013-12       Impact factor: 1.166

2.  Differential rRNA genes expression in bread wheat and its inheritance.

Authors:  Ana Carvalho; Carlos Polanco; Henrique Guedes-Pinto; José Lima-Brito
Journal:  Genetica       Date:  2013-08-28       Impact factor: 1.082

3.  Taxonomic and ecological discrimination of Fagaceae species based on internal transcribed spacer polymerase chain reaction-restriction fragment length polymorphism.

Authors:  João Paulo Coutinho; Ana Carvalho; José Lima-Brito
Journal:  AoB Plants       Date:  2014-11-26       Impact factor: 3.276

4.  Comparative genetic analysis of the 45S rDNA intergenic spacers from three Saccharum species.

Authors:  Yongji Huang; Fan Yu; Xueting Li; Ling Luo; Jiayun Wu; Yongqing Yang; Zuhu Deng; Rukai Chen; Muqing Zhang
Journal:  PLoS One       Date:  2017-08-17       Impact factor: 3.240

5.  45S rDNA external transcribed spacer organization reveals new phylogenetic relationships in Avena genus.

Authors:  Joana Rodrigues; Wanda Viegas; Manuela Silva
Journal:  PLoS One       Date:  2017-04-27       Impact factor: 3.240

6.  Gene conversion events and variable degree of homogenization of rDNA loci in cultivars of Brassica napus.

Authors:  Jana Sochorová; Olivier Coriton; Alena Kuderová; Jana Lunerová; Anne-Marie Chèvre; Aleš Kovařík
Journal:  Ann Bot       Date:  2016-10-05       Impact factor: 4.357

7.  Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids.

Authors:  Roman Matyášek; Simon Renny-Byfield; Jaroslav Fulneček; Jiří Macas; Marie-Angele Grandbastien; Richard Nichols; Andrew Leitch; Aleš Kovařík
Journal:  BMC Genomics       Date:  2012-12-23       Impact factor: 3.969

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.