Literature DB >> 21867968

Genome size, GC percentage and 5mC level in the Indonesian coelacanth Latimeria menadoensis.

Daisy Monica Makapedua1, Marco Barucca, Mariko Forconi, Niki Antonucci, Davide Bizzaro, Adolfo Amici, Maria Rita Carradori, Ettore Olmo, Adriana Canapa.   

Abstract

The living fossil Latimeria menadoensis is important to understand sarcopterygian evolution. To gain further insights into this fish species we studied its genome size, GC% and 5mC level. The genome size and the GC% of the Indonesian coelacanth seem to be very similar to those of the African coelacanth. Moreover the GC%, the CpG frequency and the 5mC level of L. menadoensis are more similar to those of fish and amphibians than to those of mammals, birds and reptiles and this is in line with the hypothesis that two different DNA methylation and CpG shortage equilibria arose during vertebrate evolution. Our results suggest that the genome of L. menadoensis has remained unchanged for several million years, maybe since the origin of the lineage which from lobe-finned fish led to tetrapods. These data fit a conservative evolutionary landscape and suggest that the genome of the extant crossopterygians may be a sort of evolutionarily frozen genome.
Copyright © 2011 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21867968     DOI: 10.1016/j.margen.2011.04.001

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  5 in total

1.  Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis.

Authors:  Alberto Pallavicini; Adriana Canapa; Marco Barucca; Jessica Alfőldi; Maria Assunta Biscotti; Francesco Buonocore; Gianluca De Moro; Federica Di Palma; Anna Maria Fausto; Mariko Forconi; Marco Gerdol; Daisy Monica Makapedua; Jason Turner-Meier; Ettore Olmo; Giuseppe Scapigliati
Journal:  BMC Genomics       Date:  2013-08-08       Impact factor: 3.969

2.  The small non-coding RNA processing machinery of two living fossil species, lungfish and coelacanth, gives new insights into the evolution of the Argonaute protein family.

Authors:  Maria Assunta Biscotti; Adriana Canapa; Mariko Forkoni; Marco Gerdol; Alberto Pallavicini; Manifred Schartl; Marco Barucca
Journal:  Genome Biol Evol       Date:  2017-02-16       Impact factor: 3.416

3.  New Perspectives on the Evolutionary History of Vitellogenin Gene Family in Vertebrates.

Authors:  Maria Assunta Biscotti; Marco Barucca; Federica Carducci; Adriana Canapa
Journal:  Genome Biol Evol       Date:  2018-10-01       Impact factor: 3.416

4.  Characterization of sex determination and sex differentiation genes in Latimeria.

Authors:  Mariko Forconi; Adriana Canapa; Marco Barucca; Maria A Biscotti; Teresa Capriglione; Francesco Buonocore; Anna M Fausto; Daisy M Makapedua; Alberto Pallavicini; Marco Gerdol; Gianluca De Moro; Giuseppe Scapigliati; Ettore Olmo; Manfred Schartl
Journal:  PLoS One       Date:  2013-04-25       Impact factor: 3.240

5.  Methylated Cytosines Mutate to Transcription Factor Binding Sites that Drive Tetrapod Evolution.

Authors:  Ximiao He; Desiree Tillo; Jeff Vierstra; Khund-Sayeed Syed; Callie Deng; G Jordan Ray; John Stamatoyannopoulos; Peter C FitzGerald; Charles Vinson
Journal:  Genome Biol Evol       Date:  2015-10-27       Impact factor: 3.416

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.