Literature DB >> 21867227

Signal, noise, and resolution in correlated fluctuations from snapshot small-angle x-ray scattering.

Richard A Kirian1, Kevin E Schmidt, Xiaoyu Wang, R Bruce Doak, John C H Spence.   

Abstract

It has been suggested that the three-dimensional structure of one particle may be reconstructed using the scattering from many identical, randomly oriented copies ab initio, without modeling or a priori information. This may be possible if these particles are frozen in either space or time, so that the conventional two-dimensional small-angle x-ray scattering (SAXS) distribution contains fluctuations and is no longer isotropic. We consider the magnitude of the correlated fluctuation SAXS (CFSAXS) signal for typical x-ray free-electron laser (XFEL) beam conditions and compare this against the errors derived with the inclusion of Poisson photon counting statistics. The resulting signal-to-noise ratio (SNR) is found to rapidly approach a limit independent of the number of particles contributing to each diffraction pattern, so that the addition of more particles to a "single-particle-per-shot" experiment may be of little value, apart from reducing solvent background. When the scattering power is significantly less than one photon per particle per Shannon pixel, the SNR grows in proportion to incident flux. We provide simulations for protein molecules in support of these analytical results, and discuss the effects of solvent background scatter. We consider the SNR dependence on resolution and particle size, and discuss the application of the method to glasses and liquids, and the implications of more powerful XFELs, smaller focused beams, and higher pulse repetition rates for this approach. We find that an accurate CFSAXS measurement may be acquired to subnanometer resolution for protein molecules if a 9-keV beam containing 10(13) photons is focused to a ~100-nm spot diameter, provided that the effects of solvent background can be reduced sufficiently.

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Year:  2011        PMID: 21867227     DOI: 10.1103/PhysRevE.84.011921

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  20 in total

1.  Reduction of small-angle scattering profiles to finite sets of structural invariants.

Authors:  Jérôme Houdayer; Frédéric Poitevin
Journal:  Acta Crystallogr A Found Adv       Date:  2017-06-09       Impact factor: 2.290

2.  Single-particle structure determination by correlations of snapshot X-ray diffraction patterns.

Authors:  D Starodub; A Aquila; S Bajt; M Barthelmess; A Barty; C Bostedt; J D Bozek; N Coppola; R B Doak; S W Epp; B Erk; L Foucar; L Gumprecht; C Y Hampton; A Hartmann; R Hartmann; P Holl; S Kassemeyer; N Kimmel; H Laksmono; M Liang; N D Loh; L Lomb; A V Martin; K Nass; C Reich; D Rolles; B Rudek; A Rudenko; J Schulz; R L Shoeman; R G Sierra; H Soltau; J Steinbrener; F Stellato; S Stern; G Weidenspointner; M Frank; J Ullrich; L Strüder; I Schlichting; H N Chapman; J C H Spence; M J Bogan
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

3.  Two-dimensional structure from random multiparticle X-ray scattering images using cross-correlations.

Authors:  B Pedrini; A Menzel; M Guizar-Sicairos; V A Guzenko; S Gorelick; C David; B D Patterson; R Abela
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

4.  Potential for measurement of the distribution of DNA folds in complex environments using Correlated X-ray Scattering.

Authors:  Gundolf Schenk; Brad Krajina; Andrew Spakowitz; Sebastian Doniach
Journal:  Mod Phys Lett B       Date:  2015-12-29       Impact factor: 1.668

5.  Operational properties of fluctuation X-ray scattering data.

Authors:  Erik Malmerberg; Cheryl A Kerfeld; Petrus H Zwart
Journal:  IUCrJ       Date:  2015-03-20       Impact factor: 4.769

6.  Single-particle structure determination by X-ray free-electron lasers: Possibilities and challenges.

Authors:  A Hosseinizadeh; A Dashti; P Schwander; R Fung; A Ourmazd
Journal:  Struct Dyn       Date:  2015-04-30       Impact factor: 2.920

7.  Deducing fast electron density changes in randomly orientated uncrystallized biomolecules in a pump-probe experiment.

Authors:  K Pande; P Schwander; M Schmidt; D K Saldin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

8.  Observation of correlated X-ray scattering at atomic resolution.

Authors:  Derek Mendez; Thomas J Lane; Jongmin Sung; Jonas Sellberg; Clément Levard; Herschel Watkins; Aina E Cohen; Michael Soltis; Shirley Sutton; James Spudich; Vijay Pande; Daniel Ratner; Sebastian Doniach
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

9.  Simulations on time-resolved structure determination of uncrystallized biomolecules in the presence of shot noise.

Authors:  K Pande; M Schmidt; P Schwander; D K Saldin
Journal:  Struct Dyn       Date:  2015-04-10       Impact factor: 2.920

10.  Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer.

Authors:  Marius Schmidt; Dilano K Saldin
Journal:  Struct Dyn       Date:  2014-03-27       Impact factor: 2.920

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