Literature DB >> 21866949

Virtual libraries of tetrapyrrole macrocycles. Combinatorics, isomers, product distributions, and data mining.

Masahiko Taniguchi1, Hai Du, Jonathan S Lindsey.   

Abstract

A software program (PorphyrinViLiGe) has been developed to enumerate the type and relative amounts of substituted tetrapyrrole macrocycles in a virtual library formed by one of four different classes of reactions. The classes include (1) 4-fold reaction of n disubstituted heterocycles (e.g., pyrroles or diiminoisoindolines) to form β-substituted porphyrins, β-substituted tetraazaporphyrins, or α- or β-substituted phthalocyanines; (2) combination of m aminoketones and n diones to form m × n pyrroles, which upon 4-fold reaction give β-substituted porphyrins; (3) derivatization of an 8-point tetrapyrrole scaffold with n reagents, and (4) 4-fold reaction of n aldehydes and pyrrole to form meso-substituted porphyrins. The program accommodates variable ratios of reactants, reversible or irreversible reaction (reaction classes 1 and 2), and degenerate modes of formation. Pólya's theorem (for enumeration of cyclic entities) has also been implemented and provides validation for reaction classes 3 and 4. The output includes the number and identity of distinct reaction-accessible substituent combinations, the number and identity of isomers thereof, and the theoretical mass spectrum. Provisions for data mining enable assessment of the number of products having a chosen pattern of substituents. Examples include derivatization of an octa-substituted phthalocyanine with eight reagents to afford a library of 2,099,728 members (yet only 6435 distinct substituent combinations) and reversible reaction of six distinct disubstituted pyrroles to afford 2649 members (yet only 126 distinct substituent combinations). In general, libraries of substituted tetrapyrrole macrocycles occupy a synthetically accessible region of chemical space that is rich in isomers (>99% or 95% for the two examples, respectively).

Entities:  

Year:  2011        PMID: 21866949     DOI: 10.1021/ci200240e

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  4 in total

1.  Primordial oil slick and the formation of hydrophobic tetrapyrrole macrocycles.

Authors:  Ana R M Soares; Masahiko Taniguchi; Vanampally Chandrashaker; Jonathan S Lindsey
Journal:  Astrobiology       Date:  2012-10-24       Impact factor: 4.335

2.  Statistical considerations on the formation of circular photosynthetic light-harvesting complexes from Rhodopseudomonas palustris.

Authors:  Masahiko Taniguchi; Sarah Henry; Richard J Cogdell; Jonathan S Lindsey
Journal:  Photosynth Res       Date:  2014-02-08       Impact factor: 3.573

3.  Tuning the Structure and Photophysics of a Fluorous Phthalocyanine Platform.

Authors:  Christopher Farley; N V S Dinesh K Bhupathiraju; Bianca K John; Charles Michael Drain
Journal:  J Phys Chem A       Date:  2016-09-14       Impact factor: 2.781

4.  Unraveling of Functional Activity of Primary Hippocampal Neuron-Glial Networks in Photodynamic Therapy Based on Tetracyanotetra(aryl)porphyrazines.

Authors:  Maria O Savyuk; Victoria D Turubanova; Tatiana A Mishchenko; Svetlana A Lermontova; Larisa G Klapshina; Dmitri V Krysko; Maria V Vedunova
Journal:  Cells       Date:  2022-04-04       Impact factor: 6.600

  4 in total

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