Literature DB >> 21864715

Semantic integration of information about orthologs and diseases: the OGO system.

Jose Antonio Miñarro-Gimenez1, Mikel Egaña Aranguren, Rodrigo Martínez Béjar, Jesualdo Tomás Fernández-Breis, Marisa Madrid.   

Abstract

Semantic Web technologies like RDF and OWL are currently applied in life sciences to improve knowledge management by integrating disparate information. Many of the systems that perform such task, however, only offer a SPARQL query interface, which is difficult to use for life scientists. We present the OGO system, which consists of a knowledge base that integrates information of orthologous sequences and genetic diseases, providing an easy to use ontology-constrain driven query interface. Such interface allows the users to define SPARQL queries through a graphical process, therefore not requiring SPARQL expertise.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21864715     DOI: 10.1016/j.jbi.2011.08.002

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  3 in total

1.  Linking genome annotation projects with genetic disorders using ontologies.

Authors:  María del Carmen Legaz-García; José Antonio Miñarro-Giménez; Marisa Madrid; Marcos Menárguez-Tortosa; Santiago Torres Martínez; Jesualdo Tomás Fernández-Breis
Journal:  J Med Syst       Date:  2012-11       Impact factor: 4.460

2.  Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation.

Authors:  Douglas Teodoro; Emilie Pasche; Julien Gobeill; Stéphane Emonet; Patrick Ruch; Christian Lovis
Journal:  J Med Internet Res       Date:  2012-05-29       Impact factor: 5.428

3.  OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.

Authors:  Mikel Egaña Aranguren; Jesualdo Tomás Fernández-Breis; Chris Mungall; Erick Antezana; Alejandro Rodríguez González; Mark D Wilkinson
Journal:  J Biomed Semantics       Date:  2013-01-04
  3 in total

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