Literature DB >> 21863821

Crystal structure and function of human nucleoplasmin (npm2): a histone chaperone in oocytes and embryos.

Olga Platonova1, Ildikó V Akey, James F Head, Christopher W Akey.   

Abstract

Human Npm2 is an ortholog of Xenopus nucleoplasmin (Np), a chaperone that binds histones. We have determined the crystal structure of a truncated Npm2-core at 1.9 Å resolution and show that the N-terminal domains of Npm2 and Np form similar pentamers. This allowed us to model an Npm2 decamer which may be formed by hydrogen bonds between quasi-conserved residues in the interface between two pentamers. Interestingly, the Npm2 pentamer lacks a prototypical A1-acidic tract in each of its subunits. This feature may be responsible for the inability of Npm2-core to bind histones. However, Npm2 with a large acidic tract in its C-terminal tail (Npm2-A2) is able to bind histones and form large complexes. Fluorescence resonance energy transfer experiments and biochemical analysis of loop mutations support the premise that nucleoplasmins form decamers when they bind H2A-H2B dimers and H3-H4 tetramers simultaneously. In the absence of histone tetramers, these chaperones bind H2A-H2B dimers with a single pentamer forming the central hub. When taken together, our data provide insights into the mechanism of histone binding by nucleoplasmins.
© 2011 American Chemical Society

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Year:  2011        PMID: 21863821      PMCID: PMC3172369          DOI: 10.1021/bi2006652

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  38 in total

Review 1.  Nuclear chaperones.

Authors:  A Philpott; T Krude; R A Laskey
Journal:  Semin Cell Dev Biol       Date:  2000-02       Impact factor: 7.727

2.  The crystal structure of nucleoplasmin-core: implications for histone binding and nucleosome assembly.

Authors:  S Dutta; I V Akey; C Dingwall; K L Hartman; T Laue; R T Nolte; J F Head; C W Akey
Journal:  Mol Cell       Date:  2001-10       Impact factor: 17.970

3.  Electrostatic interactions at the C-terminal domain of nucleoplasmin modulate its chromatin decondensation activity.

Authors:  Aitor Hierro; Jesús M Arizmendi; Sonia Bañuelos; Adelina Prado; Arturo Muga
Journal:  Biochemistry       Date:  2002-05-21       Impact factor: 3.162

4.  Defective S phase chromatin assembly causes DNA damage, activation of the S phase checkpoint, and S phase arrest.

Authors:  Xiaofen Ye; Alexa A Franco; Hidelita Santos; David M Nelson; Paul D Kaufman; Peter D Adams
Journal:  Mol Cell       Date:  2003-02       Impact factor: 17.970

Review 5.  Histone chaperones and nucleosome assembly.

Authors:  Christopher W Akey; Karolin Luger
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

6.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

7.  Nucleoplasmin binds histone H2A-H2B dimers through its distal face.

Authors:  Isbaal Ramos; Jaime Martín-Benito; Ron Finn; Laura Bretaña; Kerman Aloria; Jesús M Arizmendi; Juan Ausió; Arturo Muga; José M Valpuesta; Adelina Prado
Journal:  J Biol Chem       Date:  2010-08-09       Impact factor: 5.157

8.  Roles of NPM2 in chromatin and nucleolar organization in oocytes and embryos.

Authors:  Kathleen H Burns; Maria M Viveiros; Yongsheng Ren; Pei Wang; Francesco J DeMayo; Donald E Frail; John J Eppig; Martin M Matzuk
Journal:  Science       Date:  2003-04-25       Impact factor: 47.728

9.  Function of nucleophosmin/B23, a nucleolar acidic protein, as a histone chaperone.

Authors:  M Okuwaki; K Matsumoto; M Tsujimoto; K Nagata
Journal:  FEBS Lett       Date:  2001-10-12       Impact factor: 4.124

10.  The crystal structure of Drosophila NLP-core provides insight into pentamer formation and histone binding.

Authors:  V M Haridasan Namboodiri; Shuchismita Dutta; Ildikó V Akey; James F Head; Christopher W Akey
Journal:  Structure       Date:  2003-02       Impact factor: 5.006

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  22 in total

1.  Initiation of Parental Genome Reprogramming in Fertilized Oocyte by Splicing Kinase SRPK1-Catalyzed Protamine Phosphorylation.

Authors:  Lan-Tao Gou; Do-Hwan Lim; Wubin Ma; Brandon E Aubol; Yajing Hao; Xin Wang; Jun Zhao; Zhengyu Liang; Changwei Shao; Xuan Zhang; Fan Meng; Hairi Li; Xiaorong Zhang; Ruiming Xu; Dangsheng Li; Michael G Rosenfeld; Pamela L Mellon; Joseph A Adams; Mo-Fang Liu; Xiang-Dong Fu
Journal:  Cell       Date:  2020-03-12       Impact factor: 41.582

Review 2.  Fly Fishing for Histones: Catch and Release by Histone Chaperone Intrinsically Disordered Regions and Acidic Stretches.

Authors:  Christopher Warren; David Shechter
Journal:  J Mol Biol       Date:  2017-06-10       Impact factor: 5.469

Review 3.  Structure-function relationship of H2A-H2B specific plant histone chaperones.

Authors:  Ashish Kumar; Dileep Vasudevan
Journal:  Cell Stress Chaperones       Date:  2019-11-09       Impact factor: 3.667

4.  Reconstitution of the oocyte nucleolus in mice through a single nucleolar protein, NPM2.

Authors:  Sugako Ogushi; Kazuo Yamagata; Chikashi Obuse; Keiko Furuta; Teruhiko Wakayama; Martin M Matzuk; Mitinori Saitou
Journal:  J Cell Sci       Date:  2017-06-09       Impact factor: 5.285

5.  Developmentally Regulated Post-translational Modification of Nucleoplasmin Controls Histone Sequestration and Deposition.

Authors:  Takashi Onikubo; Joshua J Nicklay; Li Xing; Christopher Warren; Brandon Anson; Wei-Lin Wang; Emmanuel S Burgos; Sophie E Ruff; Jeffrey Shabanowitz; R Holland Cheng; Donald F Hunt; David Shechter
Journal:  Cell Rep       Date:  2015-03-12       Impact factor: 9.423

6.  Oligomerization of Drosophila Nucleoplasmin-Like Protein is required for its centromere localization.

Authors:  Eduard Anselm; Andreas W Thomae; A Arockia Jeyaprakash; Patrick Heun
Journal:  Nucleic Acids Res       Date:  2018-11-30       Impact factor: 16.971

7.  Function of homo- and hetero-oligomers of human nucleoplasmin/nucleophosmin family proteins NPM1, NPM2 and NPM3 during sperm chromatin remodeling.

Authors:  Mitsuru Okuwaki; Ayako Sumi; Miharu Hisaoka; Ai Saotome-Nakamura; Satoko Akashi; Yoshifumi Nishimura; Kyosuke Nagata
Journal:  Nucleic Acids Res       Date:  2012-02-22       Impact factor: 16.971

8.  The pentameric nucleoplasmin fold is present in Drosophila FKBP39 and a large number of chromatin-related proteins.

Authors:  Christian Edlich-Muth; Jean-Baptiste Artero; Phil Callow; Marcin R Przewloka; Aleksandra A Watson; Wei Zhang; David M Glover; Janusz Debski; Michal Dadlez; Adam R Round; V Trevor Forsyth; Ernest D Laue
Journal:  J Mol Biol       Date:  2015-03-24       Impact factor: 5.469

9.  The intrinsically disordered distal face of nucleoplasmin recognizes distinct oligomerization states of histones.

Authors:  Isbaal Ramos; Noelia Fernández-Rivero; Rocío Arranz; Kerman Aloria; Ron Finn; Jesús M Arizmendi; Juan Ausió; José María Valpuesta; Arturo Muga; Adelina Prado
Journal:  Nucleic Acids Res       Date:  2013-10-10       Impact factor: 16.971

10.  Histone chaperone-mediated nucleosome assembly process.

Authors:  Hsiu-Fang Fan; Zi-Ning Liu; Sih-Yao Chow; Yi-Han Lu; Hsin Li
Journal:  PLoS One       Date:  2015-01-22       Impact factor: 3.240

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