Literature DB >> 21863019

A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors.

Dominik Handler1, Daniel Olivieri, Maria Novatchkova, Franz Sebastian Gruber, Katharina Meixner, Karl Mechtler, Alexander Stark, Ravi Sachidanandam, Julius Brennecke.   

Abstract

PIWI proteins and their bound PIWI-interacting RNAs (piRNAs) form the core of a gonad-specific small RNA silencing pathway that protects the animal genome against the deleterious activity of transposable elements. Recent studies linked the piRNA pathway to TUDOR biology as TUDOR domains of various proteins bind symmetrically methylated Arginine residues in PIWI proteins. We systematically analysed the Drosophila TUDOR protein family and identified four previously not characterized TUDOR domain-containing proteins (CG4771, CG14303, CG11133 and CG31755) as essential piRNA pathway factors. We characterized CG4771 (Vreteno) in detail and demonstrate a critical role for this protein in primary piRNA biogenesis. Vreteno physically and/or genetically interacts with the primary pathway components Piwi, Armitage, Yb and Zucchini. Vreteno also interacts with the Tdrd12 orthologues CG11133 (Brother of Yb) and CG31755 (Sister of Yb), which are essential for the primary piRNA pathway in the germline and probably replace the function of the related but soma-specific factor Yb.

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Year:  2011        PMID: 21863019      PMCID: PMC3209783          DOI: 10.1038/emboj.2011.308

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  63 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  The Drosophila SDE3 homolog armitage is required for oskar mRNA silencing and embryonic axis specification.

Authors:  Heather A Cook; Birgit S Koppetsch; Jing Wu; William E Theurkauf
Journal:  Cell       Date:  2004-03-19       Impact factor: 41.582

3.  Homeless is required for RNA localization in Drosophila oogenesis and encodes a new member of the DE-H family of RNA-dependent ATPases.

Authors:  D E Gillespie; C A Berg
Journal:  Genes Dev       Date:  1995-10-15       Impact factor: 11.361

4.  High-resolution X-ray and NMR structures of the SMN Tudor domain: conformational variation in the binding site for symmetrically dimethylated arginine residues.

Authors:  Remco Sprangers; Matthew R Groves; Irmgard Sinning; Michael Sattler
Journal:  J Mol Biol       Date:  2003-03-21       Impact factor: 5.469

5.  SMN tudor domain structure and its interaction with the Sm proteins.

Authors:  P Selenko; R Sprangers; G Stier; D Bühler; U Fischer; M Sattler
Journal:  Nat Struct Biol       Date:  2001-01

6.  Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene.

Authors:  Emeline Sarot; Geneviève Payen-Groschêne; Alain Bucheton; Alain Pélisson
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

7.  The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains.

Authors:  Sebastian Maurer-Stroh; Nicholas J Dickens; Luke Hughes-Davies; Tony Kouzarides; Frank Eisenhaber; Chris P Ponting
Journal:  Trends Biochem Sci       Date:  2003-02       Impact factor: 13.807

8.  A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.

Authors:  Alexei A Aravin; Ravi Sachidanandam; Deborah Bourc'his; Christopher Schaefer; Dubravka Pezic; Katalin Fejes Toth; Timothy Bestor; Gregory J Hannon
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

9.  tudor, a gene required for assembly of the germ plasm in Drosophila melanogaster.

Authors:  R E Boswell; A P Mahowald
Journal:  Cell       Date:  1985-11       Impact factor: 41.582

10.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

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  91 in total

1.  shutdown is a component of the Drosophila piRNA biogenesis machinery.

Authors:  Jonathan B Preall; Benjamin Czech; Paloma M Guzzardo; Felix Muerdter; Gregory J Hannon
Journal:  RNA       Date:  2012-07-02       Impact factor: 4.942

Review 2.  New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; L Aravind
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-05       Impact factor: 9.957

Review 3.  The piRNA Pathway Guards the Germline Genome Against Transposable Elements.

Authors:  Katalin Fejes Tóth; Dubravka Pezic; Evelyn Stuwe; Alexandre Webster
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

4.  The mitochondrial outer membrane protein MDI promotes local protein synthesis and mtDNA replication.

Authors:  Yi Zhang; Yong Chen; Marjan Gucek; Hong Xu
Journal:  EMBO J       Date:  2016-04-06       Impact factor: 11.598

5.  Requirements for multivalent Yb body assembly in transposon silencing in Drosophila.

Authors:  Shigeki Hirakata; Hirotsugu Ishizu; Aoi Fujita; Yumiko Tomoe; Mikiko C Siomi
Journal:  EMBO Rep       Date:  2019-04-30       Impact factor: 8.807

6.  Drosophila P75 safeguards oogenesis by preventing H3K9me2 spreading.

Authors:  Kun Dou; Yanchao Liu; Yingpei Zhang; Chenhui Wang; Ying Huang; Zz Zhao Zhang
Journal:  J Genet Genomics       Date:  2020-03-19       Impact factor: 4.275

Review 7.  Untangling the web: the diverse functions of the PIWI/piRNA pathway.

Authors:  Sneha Ramesh Mani; Celina E Juliano
Journal:  Mol Reprod Dev       Date:  2013-06-27       Impact factor: 2.609

8.  Structural basis for arginine methylation-independent recognition of PIWIL1 by TDRD2.

Authors:  Heng Zhang; Ke Liu; Natsuko Izumi; Haiming Huang; Deqiang Ding; Zuyao Ni; Sachdev S Sidhu; Chen Chen; Yukihide Tomari; Jinrong Min
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-08       Impact factor: 11.205

9.  Testosterone alters testis function through regulation of piRNA expression in rats.

Authors:  Hyo Jin Kang; Min Jung Moon; Hye Young Lee; Sang Won Han
Journal:  Mol Biol Rep       Date:  2014-07-06       Impact factor: 2.316

10.  Recurrent Gene Duplication Diversifies Genome Defense Repertoire in Drosophila.

Authors:  Mia T Levine; Helen M Vander Wende; Emily Hsieh; EmilyClare P Baker; Harmit S Malik
Journal:  Mol Biol Evol       Date:  2016-03-14       Impact factor: 16.240

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