Literature DB >> 21857775

Characterizing and Optimizing Rater Performance for Internet-based Collaborative Labeling.

Joshua A Stein1, Andrew J Asman, Bennett A Landman.   

Abstract

Labeling structures on medical images is crucial in determining clinically relevant correlations with morphometric and volumetric features. For the exploration of new structures and new imaging modalities, validated automated methods do not yet exist, and so researchers must rely on manually drawn landmarks. Voxel-by-voxel labeling can be extremely resource intensive, so large-scale studies are problematic. Recently, statistical approaches and software have been proposed to enable Internet-based collaborative labeling of medical images. While numerous labeling software tools have been created, the use of these packages as high-throughput labeling systems has yet to become entirely viable given training requirements. Herein, we explore two modifications to a typical mouse-based labeling system: (1) a platform independent overlay for recognition of mouse gestures and (2) an inexpensive touch-screen tracking device for non-mouse input. Through this study we characterize rater reliability in point, line, curve, and region placement. For the mouse input, we find a placement accuracy of 2.48±5.29 pixels (point), 0.630±1.81 pixels (curve), 1.234±6.99 pixels (line), and 0.058±0.027 (1 - Jaccard Index for region). The gesture software increased labeling speed by 27% overall and accuracy by approximately 30-50% on point and line tracing tasks, but the touch screen module lead to slower and more error prone labeling on all tasks, likely due to relatively poor sensitivity. In summary, the mouse gesture integration layer runs as a seamless operating system overlay and could potentially benefit any labeling software; yet, the inexpensive touch screen system requires improved usability optimization and calibration before it can provide an efficient labeling system.

Entities:  

Year:  2011        PMID: 21857775      PMCID: PMC3157950          DOI: 10.1117/12.878412

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  7 in total

1.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

2.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation.

Authors:  Simon K Warfield; Kelly H Zou; William M Wells
Journal:  IEEE Trans Med Imaging       Date:  2004-07       Impact factor: 10.048

3.  Simultaneous Truth and Performance Level Estimation with Incomplete, Over-complete, and Ancillary Data.

Authors:  Bennett A Landman; John A Bogovic; Jerry L Prince
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-03-12

4.  Comparison of manual and automatic section positioning of brain MR images.

Authors:  Thomas Benner; Jonathan J Wisco; André J W van der Kouwe; Bruce Fischl; Mark G Vangel; Fred H Hochberg; A Gregory Sorensen
Journal:  Radiology       Date:  2006-02-28       Impact factor: 11.105

5.  Human white matter atlas.

Authors:  Susumu Mori; Peter van Zijl
Journal:  Am J Psychiatry       Date:  2007-07       Impact factor: 18.112

6.  MRI-based surface-assisted parcellation of human cerebellar cortex: an anatomically specified method with estimate of reliability.

Authors:  Nikos Makris; John E Schlerf; Steven M Hodge; Christian Haselgrove; Matthew D Albaugh; Larry J Seidman; Scott L Rauch; Gordon Harris; Joseph Biederman; Verne S Caviness; David N Kennedy; Jeremy D Schmahmann
Journal:  Neuroimage       Date:  2005-05-01       Impact factor: 6.556

7.  A comparison of automated segmentation and manual tracing for quantifying hippocampal and amygdala volumes.

Authors:  Rajendra A Morey; Christopher M Petty; Yuan Xu; Jasmeet Pannu Hayes; H Ryan Wagner; Darrell V Lewis; Kevin S LaBar; Martin Styner; Gregory McCarthy
Journal:  Neuroimage       Date:  2008-12-30       Impact factor: 6.556

  7 in total
  4 in total

1.  Generalized Statistical Label Fusion using Multiple Consensus Levels.

Authors:  Zhoubing Xu; Andrew J Asman; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-02-23

2.  Robust statistical label fusion through COnsensus Level, Labeler Accuracy, and Truth Estimation (COLLATE).

Authors:  Andrew J Asman; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2011-04-29       Impact factor: 10.048

3.  Segmentation of malignant gliomas through remote collaboration and statistical fusion.

Authors:  Zhoubing Xu; Andrew J Asman; Eesha Singh; Lola Chambless; Reid Thompson; Bennett A Landman
Journal:  Med Phys       Date:  2012-10       Impact factor: 4.071

4.  Crowdsourcing malaria parasite quantification: an online game for analyzing images of infected thick blood smears.

Authors:  Miguel Angel Luengo-Oroz; Asier Arranz; John Frean
Journal:  J Med Internet Res       Date:  2012-11-29       Impact factor: 5.428

  4 in total

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