Literature DB >> 21851049

[Conformational capacity of 2',3'-didehydro-2',3'-dideoxyadenosine as a key to understanding its biological activity: results of quantum chemical modelling].

A H Ponomar'ova, Ie P Iurenko, R O Zhurakivs'kyĭ, D M Hovorun.   

Abstract

Comprehensive conformational analysis of the biologically active nucleoside 2',3'-didehydro-2',3'-dideoxyadenosine (d4A) has been performed at the MP2/6-311++G(d,p)//DFT B3LYP/6-31G(d,p) level of theory. The energetic, geometrical and polar characteristics of twenty one d4A conformers as well as their conformational equilibrium were investigated. The electron density topological analysis allowed us to establish that the d4A molecule is stabilized by eight types of intramolecular interactions: O5'H...N3, O5'H...C8, C8H...O5', C2'H...N3, C5'H1...N3, C5'H2...N3 Ta C8H...H1/2C5'. The obtained results of conformational analysis lead us to think that d4A may be a terminator of the DNA chain sythesis in the 5'-3' direction. Thus it can be inferred that d4A competes with canonical 2'-deoxyadenosine in binding an active site of the corresponding enzyme.

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Year:  2011        PMID: 21851049

Source DB:  PubMed          Journal:  Ukr Biokhim Zh (1999)


  1 in total

1.  A novel view of modelling interactions between synthetic and biological polymers via docking.

Authors:  Vladimir B Tsvetkov; Alexander V Serbin
Journal:  J Comput Aided Mol Des       Date:  2012-12-13       Impact factor: 3.686

  1 in total

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