Literature DB >> 21850456

Piecing together the puzzle of parasitic plant plastome evolution.

Kirsten Krause1.   

Abstract

The importance of photosynthesis as a mode of energy production has put plastid genomes of plants under a constant purifying selection. This has shaped the characteristic features of plastid genomes across the entire spectrum of photosynthetic plants and has led to a highly uniform and conserved plastid genome with respect to structure, size, gene order, intron and editing site positions and coding capacity. Parasitic species that have dropped photosynthesis as the main energy provider share striking deviations from the plastid genome norm: multiple rearrangements within the circular chromosome, pseudogenization and gene deletions, promoter losses, intron losses as well as the extensive loss of mRNA editing competence have been reported. The collective loss of larger sets of functionally related genes like those for the plastid NADH-dehydrogenase complex and concomitant losses of RNA polymerase genes together with their target promoters point to "domino effects" where an initial loss might have triggered others. An example, which will be discussed in more detail, is the concomitant loss of the intron maturase gene matK and all introns that are supposedly subject to MatK-dependent splicing in two Cuscuta species.

Entities:  

Mesh:

Year:  2011        PMID: 21850456     DOI: 10.1007/s00425-011-1494-9

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  60 in total

1.  Targeted inactivation of the plastid ndhB gene in tobacco results in an enhanced sensitivity of photosynthesis to moderate stomatal closure.

Authors:  E M Horváth; S O Peter; T Joët; D Rumeau; L Cournac; G V Horváth; T A Kavanagh; C Schäfer; G Peltier; P Medgyesy
Journal:  Plant Physiol       Date:  2000-08       Impact factor: 8.340

Review 2.  Why are plastid genomes retained in non-photosynthetic organisms?

Authors:  Adrian C Barbrook; Christopher J Howe; Saul Purton
Journal:  Trends Plant Sci       Date:  2006-01-09       Impact factor: 18.313

Review 3.  The puzzle of plastid evolution.

Authors:  John M Archibald
Journal:  Curr Biol       Date:  2009-01-27       Impact factor: 10.834

4.  The eukaryotic tree of life: endosymbiosis takes its TOL.

Authors:  Christopher E Lane; John M Archibald
Journal:  Trends Ecol Evol       Date:  2008-04-02       Impact factor: 17.712

5.  The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications.

Authors:  Ching-Chun Chang; Hsien-Chia Lin; I-Pin Lin; Teh-Yuan Chow; Hong-Hwa Chen; Wen-Huei Chen; Chia-Hsiung Cheng; Chung-Yen Lin; Shu-Mei Liu; Chien-Chang Chang; Shu-Miaw Chaw
Journal:  Mol Biol Evol       Date:  2005-10-05       Impact factor: 16.240

6.  Substitution of the gene for chloroplast RPS16 was assisted by generation of a dual targeting signal.

Authors:  Minoru Ueda; Tomotaro Nishikawa; Masaru Fujimoto; Hideki Takanashi; Shin-Ichi Arimura; Nobuhiro Tsutsumi; Koh-Ichi Kadowaki
Journal:  Mol Biol Evol       Date:  2008-05-02       Impact factor: 16.240

7.  Plastids of three Cuscuta species differing in plastid coding capacity have a common parasite-specific RNA composition.

Authors:  Sabine Berg; Karin Krupinska; Kirsten Krause
Journal:  Planta       Date:  2003-07-24       Impact factor: 4.116

8.  Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns.

Authors:  Robert K Jansen; Zhengqiu Cai; Linda A Raubeson; Henry Daniell; Claude W Depamphilis; James Leebens-Mack; Kai F Müller; Mary Guisinger-Bellian; Rosemarie C Haberle; Anne K Hansen; Timothy W Chumley; Seung-Bum Lee; Rhiannon Peery; Joel R McNeal; Jennifer V Kuehl; Jeffrey L Boore
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

9.  The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates.

Authors:  Skip R McCoy; Jennifer V Kuehl; Jeffrey L Boore; Linda A Raubeson
Journal:  BMC Evol Biol       Date:  2008-05-01       Impact factor: 3.260

10.  Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat.

Authors:  Feng Yue; Liying Cui; Claude W dePamphilis; Bernard M E Moret; Jijun Tang
Journal:  BMC Genomics       Date:  2008       Impact factor: 3.969

View more
  21 in total

1.  Evolution of plant mitochondrial intron-encoded maturases: frequent lineage-specific loss and recurrent intracellular transfer to the nucleus.

Authors:  Wenhu Guo; Jeffrey P Mower
Journal:  J Mol Evol       Date:  2013-08-25       Impact factor: 2.395

2.  Plastid genes that were lost along the road to parasitism.

Authors:  Jennifer Lockhart
Journal:  Plant Cell       Date:  2013-10-18       Impact factor: 11.277

3.  Caught in action: fine-scale plastome evolution in the parasitic plants of Cuscuta section Ceratophorae (Convolvulaceae).

Authors:  Arjan Banerjee; Saša Stefanović
Journal:  Plant Mol Biol       Date:  2019-05-28       Impact factor: 4.076

4.  Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family.

Authors:  Susann Wicke; Kai F Müller; Claude W de Pamphilis; Dietmar Quandt; Norman J Wickett; Yan Zhang; Susanne S Renner; Gerald M Schneeweiss
Journal:  Plant Cell       Date:  2013-10-18       Impact factor: 11.277

5.  Evolutionary constraints on the plastid tRNA set decoding methionine and isoleucine.

Authors:  Sibah Alkatib; Tobias T Fleischmann; Lars B Scharff; Ralph Bock
Journal:  Nucleic Acids Res       Date:  2012-05-02       Impact factor: 16.971

6.  Plastome Evolution in Hemiparasitic Mistletoes.

Authors:  Gitte Petersen; Argelia Cuenca; Ole Seberg
Journal:  Genome Biol Evol       Date:  2015-08-29       Impact factor: 3.416

7.  Possible loss of the chloroplast genome in the parasitic flowering plant Rafflesia lagascae (Rafflesiaceae).

Authors:  Jeanmaire Molina; Khaled M Hazzouri; Daniel Nickrent; Matthew Geisler; Rachel S Meyer; Melissa M Pentony; Jonathan M Flowers; Pieter Pelser; Julie Barcelona; Samuel Alan Inovejas; Iris Uy; Wei Yuan; Olivia Wilkins; Claire-Iphanise Michel; Selina Locklear; Gisela P Concepcion; Michael D Purugganan
Journal:  Mol Biol Evol       Date:  2014-01-23       Impact factor: 16.240

8.  Mitochondrial Genes of Dinoflagellates Are Transcribed by a Nuclear-Encoded Single-Subunit RNA Polymerase.

Authors:  Chang Ying Teng; Yunkun Dang; Jillian C Danne; Ross F Waller; Beverley R Green
Journal:  PLoS One       Date:  2013-06-19       Impact factor: 3.240

9.  Complete chloroplast genome sequence of holoparasite Cistanche deserticola (Orobanchaceae) reveals gene loss and horizontal gene transfer from its host Haloxylon ammodendron (Chenopodiaceae).

Authors:  Xi Li; Ti-Cao Zhang; Qin Qiao; Zhumei Ren; Jiayuan Zhao; Takahiro Yonezawa; Masami Hasegawa; M James C Crabbe; Jianqiang Li; Yang Zhong
Journal:  PLoS One       Date:  2013-03-15       Impact factor: 3.240

10.  Plastid genome evolution across the genus Cuscuta (Convolvulaceae): two clades within subgenus Grammica exhibit extensive gene loss.

Authors:  Thomas Braukmann; Maria Kuzmina; Sasa Stefanovic
Journal:  J Exp Bot       Date:  2013-01-23       Impact factor: 6.992

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.