Literature DB >> 21842953

Sequence correlations shape protein promiscuity.

David B Lukatsky1, Ariel Afek, Eugene I Shakhnovich.   

Abstract

We predict analytically that diagonal correlations of amino acid positions within protein sequences statistically enhance protein propensity for nonspecific binding. We use the term "promiscuity" to describe such nonspecific binding. Diagonal correlations represent statistically significant repeats of sequence patterns where amino acids of the same type are clustered together. The predicted effect is qualitatively robust with respect to the form of the microscopic interaction potentials and the average amino acid composition. Our analytical results provide an explanation for the enhanced diagonal correlations observed in hubs of eukaryotic organismal proteomes [J. Mol. Biol. 409, 439 (2011)]. We suggest experiments that will allow direct testing of the predicted effect.

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Year:  2011        PMID: 21842953     DOI: 10.1063/1.3624332

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

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Authors:  Lucas C Wheeler; Shion A Lim; Susan Marqusee; Michael J Harms
Journal:  Curr Opin Struct Biol       Date:  2016-06-09       Impact factor: 6.809

2.  Role of non-specific interactions in the phase-separation and maturation of macromolecules.

Authors:  Rakesh Krishnan; Srivastav Ranganathan; Samir K Maji; Ranjith Padinhateeri
Journal:  PLoS Comput Biol       Date:  2022-05-09       Impact factor: 4.779

3.  Residual structures, conformational fluctuations, and electrostatic interactions in the synergistic folding of two intrinsically disordered proteins.

Authors:  Weihong Zhang; Debabani Ganguly; Jianhan Chen
Journal:  PLoS Comput Biol       Date:  2012-01-12       Impact factor: 4.475

4.  Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes.

Authors:  Ariel Afek; Hila Cohen; Shiran Barber-Zucker; Raluca Gordân; David B Lukatsky
Journal:  PLoS Comput Biol       Date:  2015-08-18       Impact factor: 4.475

  4 in total

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