Literature DB >> 21842259

Reduction of stochastic conductance-based neuron models with time-scales separation.

Gilles Wainrib1, Michèle Thieullen, Khashayar Pakdaman.   

Abstract

We introduce a method for systematically reducing the dimension of biophysically realistic neuron models with stochastic ion channels exploiting time-scales separation. Based on a combination of singular perturbation methods for kinetic Markov schemes with some recent mathematical developments of the averaging method, the techniques are general and applicable to a large class of models. As an example, we derive and analyze reductions of different stochastic versions of the Hodgkin Huxley (HH) model, leading to distinct reduced models. The bifurcation analysis of one of the reduced models with the number of channels as a parameter provides new insights into some features of noisy discharge patterns, such as the bimodality of interspike intervals distribution. Our analysis of the stochastic HH model shows that, besides being a method to reduce the number of variables of neuronal models, our reduction scheme is a powerful method for gaining understanding on the impact of fluctuations due to finite size effects on the dynamics of slow fast systems. Our analysis of the reduced model reveals that decreasing the number of sodium channels in the HH model leads to a transition in the dynamics reminiscent of the Hopf bifurcation and that this transition accounts for changes in characteristics of the spike train generated by the model. Finally, we also examine the impact of these results on neuronal coding, notably, reliability of discharge times and spike latency, showing that reducing the number of channels can enhance discharge time reliability in response to weak inputs and that this phenomenon can be accounted for through the analysis of the reduced model.

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Year:  2011        PMID: 21842259     DOI: 10.1007/s10827-011-0355-7

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  24 in total

1.  Noise in neurons is message dependent.

Authors:  G A Cecchi; M Sigman; J M Alonso; L Martínez; D R Chialvo; M O Magnasco
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

2.  Subthreshold voltage noise due to channel fluctuations in active neuronal membranes.

Authors:  P N Steinmetz; A Manwani; C Koch; M London; I Segev
Journal:  J Comput Neurosci       Date:  2000 Sep-Oct       Impact factor: 1.621

3.  Noise-enhanced neuronal reliability.

Authors:  S Tanabe; K Pakdaman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-09-20

4.  Comparison of asymptotics of heart and nerve excitability.

Authors:  Rebecca Suckley; Vadim N Biktashev
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-07-11

5.  Random dynamics of the Morris-Lecar neural model.

Authors:  Takashi Tateno; Khashayar Pakdaman
Journal:  Chaos       Date:  2004-09       Impact factor: 3.642

6.  Entropically enhanced excitability in small systems.

Authors:  J W Shuai; P Jung
Journal:  Phys Rev Lett       Date:  2005-09-07       Impact factor: 9.161

7.  Two classes of quasi-steady-state model reductions for stochastic kinetics.

Authors:  Ethan A Mastny; Eric L Haseltine; James B Rawlings
Journal:  J Chem Phys       Date:  2007-09-07       Impact factor: 3.488

8.  Invariant manifold reductions for Markovian ion channel dynamics.

Authors:  James P Keener
Journal:  J Math Biol       Date:  2008-07-01       Impact factor: 2.259

9.  Spontaneous action potentials due to channel fluctuations.

Authors:  C C Chow; J A White
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

10.  White-noise stimulation of the Hodgkin-Huxley model.

Authors:  Takayuki Takahata; Seiji Tanabe; K Pakdaman
Journal:  Biol Cybern       Date:  2002-05       Impact factor: 2.086

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  3 in total

1.  Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics.

Authors:  David F Anderson; Bard Ermentrout; Peter J Thomas
Journal:  J Comput Neurosci       Date:  2014-11-19       Impact factor: 1.621

2.  The neuronal response at extended timescales: a linearized spiking input-output relation.

Authors:  Daniel Soudry; Ron Meir
Journal:  Front Comput Neurosci       Date:  2014-04-02       Impact factor: 2.380

3.  A simple transfer function for nonlinear dendritic integration.

Authors:  Matthew F Singh; David H Zald
Journal:  Front Comput Neurosci       Date:  2015-08-10       Impact factor: 2.380

  3 in total

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