Literature DB >> 21841005

Class Cariacotrichea, a novel ciliate taxon from the anoxic Cariaco Basin, Venezuela.

William Orsi1, Virginia Edgcomb2, Jose Faria3, Wilhelm Foissner4, William H Fowle1, Tine Hohmann1, Paula Suarez3, Craig Taylor2, Gordon T Taylor5, Peter Vd'ačný6, Slava S Epstein1.   

Abstract

The majority of environmental micro-organisms identified with the rRNA approach have never been visualized. Thus, their reliable classification and taxonomic assignment is often difficult or even impossible. In our preliminary 18S rRNA gene sequencing work from the world's largest anoxic marine environment, the Cariaco Basin (Caribbean Sea, Venezuela), we detected a ciliate clade, designated previously as CAR_H [Stoeck, S., Taylor, G. T. & Epstein, S. S. (2003). Appl Environ Microbiol 63, 5656-5663]. Here, we combine the traditional rRNA detection method of fluorescent in situ hybridization (FISH) with scanning electron microscopy (SEM) and confirm the phylogenetic separation of the CAR_H sequences from all other ciliate classes by showing an outstanding morphological feature of this group: a unique, archway-shaped kinety surrounding the oral apparatus and extending to the posterior body end in CAR_H cells. Based on this specific feature and the molecular phylogenies, we propose a novel ciliate class, Cariacotrichea nov. cl.

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Year:  2011        PMID: 21841005     DOI: 10.1099/ijs.0.034710-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  12 in total

1.  Effect of oxygen minimum zone formation on communities of marine protists.

Authors:  William Orsi; Young C Song; Steven Hallam; Virginia Edgcomb
Journal:  ISME J       Date:  2012-03-08       Impact factor: 10.302

2.  Ciliate Diversity From Aquatic Environments in the Brazilian Atlantic Forest as Revealed by High-Throughput DNA Sequencing.

Authors:  Noemi M Fernandes; Pedro H Campello-Nunes; Thiago S Paiva; Carlos A G Soares; Inácio D Silva-Neto
Journal:  Microb Ecol       Date:  2020-10-06       Impact factor: 4.552

3.  Comparison of three clustering approaches for detecting novel environmental microbial diversity.

Authors:  Dominik Forster; Micah Dunthorn; Thorsten Stoeck; Frédéric Mahé
Journal:  PeerJ       Date:  2016-02-25       Impact factor: 2.984

4.  The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates.

Authors:  Anna Gimmler; Ralf Korn; Colomban de Vargas; Stéphane Audic; Thorsten Stoeck
Journal:  Sci Rep       Date:  2016-09-16       Impact factor: 4.379

5.  Patterns and Drivers of Vertical Distribution of the Ciliate Community from the Surface to the Abyssopelagic Zone in the Western Pacific Ocean.

Authors:  Feng Zhao; Sabine Filker; Kuidong Xu; Pingping Huang; Shan Zheng
Journal:  Front Microbiol       Date:  2017-12-19       Impact factor: 5.640

6.  Pyrosequencing analysis of the protist communities in a High Arctic meromictic lake: DNA preservation and change.

Authors:  Sophie Charvet; Warwick F Vincent; André Comeau; Connie Lovejoy
Journal:  Front Microbiol       Date:  2012-12-20       Impact factor: 5.640

7.  Prevalence of partnerships between bacteria and ciliates in oxygen-depleted marine water columns.

Authors:  William Orsi; Sophie Charvet; Peter Vd'ačný; Joan M Bernhard; Virginia P Edgcomb
Journal:  Front Microbiol       Date:  2012-09-19       Impact factor: 5.640

8.  A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology.

Authors:  Thorsten Stoeck; Hans-Werner Breiner; Sabine Filker; Veronika Ostermaier; Barbara Kammerlander; Bettina Sonntag
Journal:  Environ Microbiol       Date:  2013-07-15       Impact factor: 5.491

9.  The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora (Eukaryota, Alveolata).

Authors:  Feng Gao; Alan Warren; Qianqian Zhang; Jun Gong; Miao Miao; Ping Sun; Dapeng Xu; Jie Huang; Zhenzhen Yi; Weibo Song
Journal:  Sci Rep       Date:  2016-04-29       Impact factor: 4.379

10.  Ciliate diversity and distribution patterns in the sediments of a seamount and adjacent abyssal plains in the tropical Western Pacific Ocean.

Authors:  Feng Zhao; Sabine Filker; Thorsten Stoeck; Kuidong Xu
Journal:  BMC Microbiol       Date:  2017-09-12       Impact factor: 3.605

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