Literature DB >> 21837224

1,1'-[(5-Hy-droxy-methyl-1,3-phenyl-ene)bis-(methyl-ene)]dipyridin-4(1H)-one monohydrate.

José A Fernandes, Manuela E L Lago, Sandrina Silva, João P C Tomé, José A S Cavaleiro, Filipe A Almeida Paz.   

Abstract

The asymmetric unit of the title compound, C(19)H(18)N(2)O(3), comprises a whole organic dipyridinone mol-ecule plus a water mol-ecule of crystallization. The planes of the pyridinone rings are approximately perpendicular with the plane of the central aromatic ring [dihedral angles = 80.68 (8) and 83.65 (8)°]. The C-O bond of the hy-droxy group subtends an angle of 31.71 (10)° with the plane through the central aromatic ring. The crystal packing is mediated by the presence of several O-H⋯O hydrogen-bonding inter-actions and while the water mol-ecules form a C(2) (1)(4) chain parallel to the c axis of the unit cell, the pendant hy-droxy groups are engaged in O-H⋯O=C hydrogen bonds described by a C(1) (1)(12) graph-set motif which runs parallel to the a axis.

Entities:  

Year:  2011        PMID: 21837224      PMCID: PMC3152136          DOI: 10.1107/S1600536811024809

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For previous reports on the design and synthesis of mol­ecules based on a mesitylene core, see: Reger et al. (2010 ▶); Podyachev et al. (2006 ▶); Spiccia et al.(1997 ▶); Newkome et al. (1986 ▶); Berl et al., (2002 ▶). For the crystal structure and vibrational features of the precursor, 1,3,5-tris­(bromo­meth­yl)benzene, see: Fernandes et al. (2011 ▶). For a systematization of the graph-set notation for hydrogen-bonded aggregates, see: Grell et al. (1999 ▶).

Experimental

Crystal data

C19H18N2O3·H2O M = 340.37 Monoclinic, a = 12.2215 (8) Å b = 14.1521 (10) Å c = 10.3326 (7) Å β = 114.720 (3)° V = 1623.36 (19) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 180 K 0.16 × 0.10 × 0.10 mm

Data collection

Bruker X8 KappaCCD APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.984, T max = 0.990 79090 measured reflections 2188 independent reflections 2103 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.077 S = 1.07 2188 reflections 233 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 2005 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024809/tk2759sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024809/tk2759Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024809/tk2759Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18N2O3·H2OF(000) = 720
Mr = 340.37Dx = 1.393 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 9702 reflections
a = 12.2215 (8) Åθ = 2.6–29.1°
b = 14.1521 (10) ŵ = 0.10 mm1
c = 10.3326 (7) ÅT = 180 K
β = 114.720 (3)°Block, colourless
V = 1623.36 (19) Å30.16 × 0.10 × 0.10 mm
Z = 4
Bruker X8 KappaCCD APEXII diffractometer2188 independent reflections
Radiation source: fine-focus sealed tube2103 reflections with I > 2σ(I)
graphiteRint = 0.044
ω and φ scansθmax = 29.1°, θmin = 3.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −16→16
Tmin = 0.984, Tmax = 0.990k = −19→19
79090 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.077w = 1/[σ2(Fo2) + (0.0434P)2 + 0.5107P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2188 reflectionsΔρmax = 0.26 e Å3
233 parametersΔρmin = −0.20 e Å3
5 restraintsAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.92401 (12)0.28077 (10)0.65493 (14)0.0187 (3)
N20.79193 (12)0.00864 (10)0.34079 (15)0.0196 (3)
O10.38592 (12)0.23425 (10)0.59461 (18)0.0387 (4)
H10.31090.24180.56010.058*
O21.15708 (12)0.29372 (10)0.46529 (15)0.0317 (3)
O31.14843 (12)−0.01091 (12)0.42158 (16)0.0384 (4)
C10.41238 (14)0.14197 (11)0.56300 (19)0.0216 (3)
H1A0.34670.11950.47350.026*
H1B0.41840.09820.64050.026*
C20.53025 (14)0.14250 (10)0.54728 (17)0.0175 (3)
C30.62390 (14)0.20213 (11)0.63200 (17)0.0181 (3)
H30.61320.24320.69850.022*
C40.73306 (14)0.20150 (11)0.61923 (16)0.0174 (3)
C50.74897 (14)0.14000 (11)0.52290 (17)0.0182 (3)
H50.82410.13820.51600.022*
C60.65561 (14)0.08125 (11)0.43687 (17)0.0179 (3)
C70.54605 (14)0.08265 (11)0.44961 (17)0.0185 (3)
H70.48210.04250.39130.022*
C80.83252 (14)0.26795 (12)0.71127 (18)0.0210 (3)
H8A0.79720.33010.71610.025*
H8B0.87140.24230.80920.025*
C90.89558 (15)0.33240 (12)0.53364 (18)0.0217 (3)
H90.82190.36650.49530.026*
C100.97013 (15)0.33616 (12)0.46626 (19)0.0231 (3)
H100.94690.37170.38090.028*
C111.08376 (14)0.28714 (12)0.52208 (18)0.0222 (3)
C121.10808 (15)0.23253 (12)0.64795 (19)0.0247 (4)
H121.18060.19710.68920.030*
C131.02879 (15)0.23077 (12)0.70921 (17)0.0221 (3)
H131.04710.19360.79220.027*
C140.66668 (14)0.01871 (12)0.32359 (19)0.0229 (3)
H14A0.6339−0.04460.32780.027*
H14B0.61750.04580.22850.027*
C150.84155 (16)0.07180 (13)0.28150 (19)0.0245 (3)
H150.79220.11990.22090.029*
C160.96049 (16)0.06788 (13)0.30689 (19)0.0265 (4)
H160.99220.11320.26390.032*
C171.03820 (16)−0.00342 (13)0.39709 (19)0.0253 (4)
C180.98150 (16)−0.06684 (13)0.45843 (19)0.0265 (4)
H181.0280−0.11530.52080.032*
C190.86260 (16)−0.05917 (11)0.42929 (18)0.0229 (3)
H190.8281−0.10240.47200.027*
O1W0.26763 (13)0.99519 (12)0.23725 (16)0.0365 (3)
H1X0.216 (2)0.998 (2)0.283 (2)0.055*
H1Y0.224 (2)0.999 (2)0.1375 (11)0.055*
U11U22U33U12U13U23
N10.0158 (6)0.0206 (6)0.0200 (6)−0.0034 (5)0.0077 (5)−0.0024 (5)
N20.0178 (6)0.0221 (6)0.0206 (6)0.0011 (5)0.0096 (5)−0.0030 (5)
O10.0209 (6)0.0327 (7)0.0641 (10)0.0020 (5)0.0195 (7)−0.0139 (7)
O20.0235 (6)0.0414 (7)0.0351 (7)0.0019 (6)0.0172 (6)0.0058 (6)
O30.0206 (6)0.0613 (10)0.0345 (8)0.0042 (6)0.0126 (6)0.0033 (7)
C10.0175 (7)0.0236 (7)0.0267 (8)0.0006 (6)0.0121 (6)0.0023 (6)
C20.0153 (6)0.0193 (7)0.0188 (7)0.0018 (6)0.0080 (6)0.0048 (6)
C30.0183 (7)0.0190 (7)0.0190 (7)0.0012 (6)0.0099 (6)−0.0004 (6)
C40.0159 (7)0.0187 (7)0.0173 (7)−0.0005 (5)0.0064 (6)0.0004 (5)
C50.0142 (6)0.0215 (7)0.0202 (7)−0.0005 (6)0.0085 (6)−0.0028 (6)
C60.0184 (7)0.0180 (6)0.0180 (7)0.0012 (5)0.0081 (6)−0.0003 (5)
C70.0157 (7)0.0182 (7)0.0206 (7)−0.0012 (5)0.0067 (6)0.0008 (6)
C80.0178 (7)0.0248 (8)0.0227 (7)−0.0043 (6)0.0107 (6)−0.0064 (6)
C90.0178 (7)0.0206 (7)0.0241 (8)0.0000 (6)0.0063 (6)0.0008 (6)
C100.0203 (7)0.0246 (8)0.0233 (7)−0.0006 (6)0.0081 (6)0.0045 (6)
C110.0196 (8)0.0227 (8)0.0250 (8)−0.0034 (6)0.0099 (7)−0.0025 (6)
C120.0192 (8)0.0242 (8)0.0294 (9)0.0021 (6)0.0090 (7)0.0041 (7)
C130.0193 (7)0.0214 (7)0.0231 (8)−0.0008 (6)0.0063 (6)0.0024 (6)
C140.0159 (7)0.0287 (8)0.0248 (8)−0.0021 (6)0.0092 (6)−0.0092 (7)
C150.0263 (8)0.0250 (8)0.0237 (8)0.0035 (6)0.0120 (7)0.0032 (6)
C160.0258 (8)0.0313 (9)0.0260 (9)−0.0011 (7)0.0144 (7)0.0028 (7)
C170.0224 (8)0.0328 (9)0.0217 (8)0.0012 (7)0.0103 (7)−0.0026 (7)
C180.0261 (9)0.0273 (8)0.0269 (8)0.0071 (7)0.0118 (7)0.0055 (7)
C190.0271 (8)0.0200 (7)0.0246 (8)−0.0001 (6)0.0139 (7)0.0004 (6)
O1W0.0245 (6)0.0518 (9)0.0308 (7)−0.0028 (6)0.0091 (6)−0.0021 (6)
N1—C131.362 (2)C7—H70.9500
N1—C91.364 (2)C8—H8A0.9900
N1—C81.472 (2)C8—H8B0.9900
N2—C191.357 (2)C9—C101.359 (2)
N2—C151.361 (2)C9—H90.9500
N2—C141.472 (2)C10—C111.440 (2)
O1—C11.416 (2)C10—H100.9500
O1—H10.8400C11—C121.433 (2)
O2—C111.263 (2)C12—C131.361 (2)
O3—C171.267 (2)C12—H120.9500
C1—C21.516 (2)C13—H130.9500
C1—H1A0.9900C14—H14A0.9900
C1—H1B0.9900C14—H14B0.9900
C2—C71.391 (2)C15—C161.366 (2)
C2—C31.397 (2)C15—H150.9500
C3—C41.394 (2)C16—C171.431 (3)
C3—H30.9500C16—H160.9500
C4—C51.396 (2)C17—C181.433 (3)
C4—C81.516 (2)C18—C191.360 (2)
C5—C61.391 (2)C18—H180.9500
C5—H50.9500C19—H190.9500
C6—C71.399 (2)O1W—H1X0.936 (10)
C6—C141.518 (2)O1W—H1Y0.943 (10)
C13—N1—C9119.41 (14)C10—C9—N1121.57 (15)
C13—N1—C8120.81 (14)C10—C9—H9119.2
C9—N1—C8119.05 (14)N1—C9—H9119.2
C19—N2—C15119.32 (14)C9—C10—C11121.12 (15)
C19—N2—C14119.10 (14)C9—C10—H10119.4
C15—N2—C14121.23 (15)C11—C10—H10119.4
C1—O1—H1109.5O2—C11—C12122.89 (16)
O1—C1—C2109.83 (13)O2—C11—C10122.09 (15)
O1—C1—H1A109.7C12—C11—C10115.00 (14)
C2—C1—H1A109.7C13—C12—C11120.93 (15)
O1—C1—H1B109.7C13—C12—H12119.5
C2—C1—H1B109.7C11—C12—H12119.5
H1A—C1—H1B108.2C12—C13—N1121.92 (15)
C7—C2—C3119.77 (14)C12—C13—H13119.0
C7—C2—C1120.07 (14)N1—C13—H13119.0
C3—C2—C1120.15 (14)N2—C14—C6112.76 (13)
C4—C3—C2120.17 (14)N2—C14—H14A109.0
C4—C3—H3119.9C6—C14—H14A109.0
C2—C3—H3119.9N2—C14—H14B109.0
C3—C4—C5119.71 (14)C6—C14—H14B109.0
C3—C4—C8118.98 (13)H14A—C14—H14B107.8
C5—C4—C8121.31 (13)N2—C15—C16121.70 (16)
C6—C5—C4120.45 (14)N2—C15—H15119.1
C6—C5—H5119.8C16—C15—H15119.1
C4—C5—H5119.8C15—C16—C17121.11 (16)
C5—C6—C7119.53 (14)C15—C16—H16119.4
C5—C6—C14121.83 (14)C17—C16—H16119.4
C7—C6—C14118.56 (14)O3—C17—C16123.34 (17)
C2—C7—C6120.35 (14)O3—C17—C18121.98 (17)
C2—C7—H7119.8C16—C17—C18114.68 (15)
C6—C7—H7119.8C19—C18—C17121.44 (16)
N1—C8—C4111.76 (13)C19—C18—H18119.3
N1—C8—H8A109.3C17—C18—H18119.3
C4—C8—H8A109.3N2—C19—C18121.72 (15)
N1—C8—H8B109.3N2—C19—H19119.1
C4—C8—H8B109.3C18—C19—H19119.1
H8A—C8—H8B107.9H1X—O1W—H1Y111.4 (15)
O1—C1—C2—C7−145.77 (15)C9—C10—C11—O2−176.23 (17)
O1—C1—C2—C335.1 (2)C9—C10—C11—C122.4 (2)
C7—C2—C3—C4−0.2 (2)O2—C11—C12—C13177.05 (17)
C1—C2—C3—C4178.93 (14)C10—C11—C12—C13−1.6 (2)
C2—C3—C4—C5−0.9 (2)C11—C12—C13—N1−0.4 (3)
C2—C3—C4—C8179.21 (14)C9—N1—C13—C121.7 (2)
C3—C4—C5—C61.8 (2)C8—N1—C13—C12171.78 (15)
C8—C4—C5—C6−178.39 (15)C19—N2—C14—C685.84 (19)
C4—C5—C6—C7−1.4 (2)C15—N2—C14—C6−87.4 (2)
C4—C5—C6—C14175.51 (15)C5—C6—C14—N215.0 (2)
C3—C2—C7—C60.6 (2)C7—C6—C14—N2−168.12 (14)
C1—C2—C7—C6−178.55 (15)C19—N2—C15—C161.1 (2)
C5—C6—C7—C20.2 (2)C14—N2—C15—C16174.26 (16)
C14—C6—C7—C2−176.82 (15)N2—C15—C16—C170.2 (3)
C13—N1—C8—C4−98.31 (17)C15—C16—C17—O3178.65 (18)
C9—N1—C8—C471.82 (18)C15—C16—C17—C18−1.2 (3)
C3—C4—C8—N1−161.86 (14)O3—C17—C18—C19−178.78 (17)
C5—C4—C8—N118.3 (2)C16—C17—C18—C191.1 (3)
C13—N1—C9—C10−0.8 (2)C15—N2—C19—C18−1.2 (2)
C8—N1—C9—C10−171.09 (15)C14—N2—C19—C18−174.54 (16)
N1—C9—C10—C11−1.3 (3)C17—C18—C19—N20.1 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1X···O3i0.94 (1)1.93 (1)2.842 (2)164 (2)
O1W—H1Y···O3ii0.94 (1)2.03 (1)2.973 (2)174 (2)
O1—H1···O2iii0.841.872.6814 (19)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1X⋯O3i0.94 (1)1.93 (1)2.842 (2)164 (2)
O1W—H1Y⋯O3ii0.94 (1)2.03 (1)2.973 (2)174 (2)
O1—H1⋯O2iii0.841.872.6814 (19)162

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Supramolecular polymers generated from heterocomplementary monomers linked through multiple hydrogen-bonding arrays--formation, characterization, and properties.

Authors:  Volker Berl; Marc Schmutz; Michael J Krische; Richard G Khoury; Jean-Marie Lehn
Journal:  Chemistry       Date:  2002-03-01       Impact factor: 5.236

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns: some mathematical concepts.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-12-01
  3 in total

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