Literature DB >> 21837223

Methyl 4-[(pyrimidin-2-yl)carbamo-yl]benzoate.

Chun-Hsiang Lu, Chia-Jun Wu, Chun-Wei Yeh, Hui-Ling Hu, Jhy-Der Chen.   

Abstract

Mol-ecules of the title compound, C(13)H(11)N(3)O(3), are connected into centrosymmetric dimers via inter-molecular N-H⋯N hydrogen bonds, generating an R(2) (2)(8) motif. The pyrimidine and the phenyl rings are twisted with respect to each other by an inter-planar angle of 61.3 (1)°.

Entities:  

Year:  2011        PMID: 21837223      PMCID: PMC3151977          DOI: 10.1107/S1600536811025190

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related metal complexes of the title compound, see: Wu et al. (2011 ▶).

Experimental

Crystal data

C13H11N3O3 M = 257.25 Triclinic, a = 5.7387 (7) Å b = 7.9037 (10) Å c = 13.6496 (19) Å α = 80.793 (12)° β = 79.997 (11)° γ = 77.426 (10)° V = 590.24 (13) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 295 K 0.5 × 0.3 × 0.1 mm

Data collection

Siemens P4 diffractometer Absorption correction: ψ scan (XSCANS; Siemens, 1995 ▶) T min = 0.963, T max = 0.989 2727 measured reflections 2066 independent reflections 1427 reflections with I > 2σ(I) R int = 0.037 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.119 S = 1.04 2066 reflections 174 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.18 e Å−3 Data collection: XSCANS (Siemens, 1995 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811025190/bt5561sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025190/bt5561Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811025190/bt5561Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11N3O3Z = 2
Mr = 257.25F(000) = 268
Triclinic, P1Dx = 1.447 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.7387 (7) ÅCell parameters from 26 reflections
b = 7.9037 (10) Åθ = 4.4–17.4°
c = 13.6496 (19) ŵ = 0.11 mm1
α = 80.793 (12)°T = 295 K
β = 79.997 (11)°Plate, colourless
γ = 77.426 (10)°0.5 × 0.3 × 0.1 mm
V = 590.24 (13) Å3
Siemens P4 diffractometer1427 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.037
graphiteθmax = 25.0°, θmin = 2.7°
ω scansh = −6→1
Absorption correction: ψ scan (XSCANS; Siemens, 1995)k = −9→9
Tmin = 0.963, Tmax = 0.989l = −16→16
2727 measured reflections3 standard reflections every 97 reflections
2066 independent reflections intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.119w = 1/[σ2(Fo2) + (0.043P)2 + 0.2307P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2066 reflectionsΔρmax = 0.21 e Å3
174 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.035 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3108 (4)0.2690 (3)1.01131 (16)0.0434 (5)
C20.4585 (5)0.1585 (3)1.15496 (18)0.0526 (6)
H2A0.55310.16221.20320.063*
C30.3398 (5)0.0224 (3)1.16664 (19)0.0556 (7)
H3A0.3510−0.06471.22110.067*
C40.2038 (5)0.0214 (3)1.09384 (19)0.0569 (7)
H4A0.1188−0.06821.09990.068*
C50.1708 (4)0.4275 (3)0.85404 (17)0.0441 (5)
C60.2691 (4)0.5254 (3)0.75767 (16)0.0410 (5)
C70.5130 (4)0.4939 (3)0.71956 (17)0.0448 (6)
H7A0.62290.41850.75700.054*
C80.5926 (4)0.5745 (3)0.62600 (17)0.0449 (6)
H8A0.75550.55030.60000.054*
C90.4323 (4)0.6908 (3)0.57060 (16)0.0426 (5)
C100.1888 (4)0.7234 (3)0.60887 (18)0.0493 (6)
H10A0.07970.80150.57220.059*
C110.1086 (4)0.6399 (3)0.70134 (17)0.0474 (6)
H11A−0.05520.66080.72610.057*
C120.5146 (4)0.7860 (3)0.47167 (17)0.0473 (6)
C130.8539 (5)0.8302 (4)0.35163 (19)0.0626 (7)
H13A1.02570.81190.34900.094*
H13B0.78690.95300.34850.094*
H13C0.81740.78560.29590.094*
N10.4459 (3)0.2859 (2)1.07831 (14)0.0469 (5)
N20.1882 (4)0.1440 (3)1.01460 (15)0.0558 (6)
N30.3151 (4)0.3953 (3)0.92751 (14)0.0496 (5)
H3B0.42020.46050.92130.059*
O1−0.0197 (3)0.3799 (2)0.86197 (13)0.0601 (5)
O20.7514 (3)0.7402 (2)0.44414 (12)0.0576 (5)
O30.3845 (3)0.8936 (3)0.42251 (14)0.0690 (6)
U11U22U33U12U13U23
C10.0482 (13)0.0487 (13)0.0364 (12)−0.0176 (11)−0.0042 (10)−0.0053 (10)
C20.0638 (16)0.0542 (15)0.0436 (13)−0.0143 (12)−0.0160 (12)−0.0048 (11)
C30.0678 (17)0.0504 (15)0.0466 (14)−0.0158 (12)−0.0070 (12)0.0044 (11)
C40.0648 (17)0.0553 (15)0.0551 (15)−0.0292 (13)−0.0085 (13)0.0032 (12)
C50.0487 (14)0.0462 (13)0.0419 (12)−0.0162 (11)−0.0083 (10)−0.0077 (10)
C60.0493 (14)0.0412 (12)0.0381 (12)−0.0155 (10)−0.0109 (10)−0.0071 (9)
C70.0458 (13)0.0476 (13)0.0442 (13)−0.0128 (10)−0.0150 (10)−0.0010 (10)
C80.0412 (13)0.0498 (13)0.0459 (13)−0.0123 (10)−0.0097 (10)−0.0045 (11)
C90.0510 (14)0.0445 (12)0.0379 (12)−0.0160 (10)−0.0116 (10)−0.0070 (10)
C100.0514 (14)0.0501 (14)0.0482 (14)−0.0086 (11)−0.0197 (11)0.0001 (11)
C110.0422 (13)0.0550 (14)0.0473 (14)−0.0130 (11)−0.0093 (10)−0.0051 (11)
C120.0557 (15)0.0496 (14)0.0422 (13)−0.0179 (12)−0.0141 (11)−0.0046 (11)
C130.0716 (18)0.0643 (17)0.0510 (15)−0.0245 (14)0.0011 (13)−0.0002 (13)
N10.0571 (12)0.0483 (11)0.0413 (11)−0.0194 (9)−0.0127 (9)−0.0044 (9)
N20.0666 (14)0.0570 (13)0.0529 (13)−0.0319 (11)−0.0148 (10)0.0009 (10)
N30.0625 (13)0.0563 (12)0.0405 (11)−0.0326 (10)−0.0164 (9)0.0013 (9)
O10.0508 (10)0.0784 (12)0.0559 (11)−0.0290 (9)−0.0113 (8)0.0042 (9)
O20.0591 (11)0.0611 (11)0.0489 (10)−0.0155 (9)−0.0034 (8)0.0043 (8)
O30.0674 (12)0.0794 (13)0.0560 (11)−0.0142 (10)−0.0207 (9)0.0166 (10)
C1—N21.323 (3)C7—H7A0.9300
C1—N11.336 (3)C8—C91.384 (3)
C1—N31.393 (3)C8—H8A0.9300
C2—N11.331 (3)C9—C101.387 (3)
C2—C31.369 (4)C9—C121.490 (3)
C2—H2A0.9300C10—C111.380 (3)
C3—C41.368 (4)C10—H10A0.9300
C3—H3A0.9300C11—H11A0.9300
C4—N21.333 (3)C12—O31.202 (3)
C4—H4A0.9300C12—O21.331 (3)
C5—O11.213 (3)C13—O21.443 (3)
C5—N31.368 (3)C13—H13A0.9600
C5—C61.501 (3)C13—H13B0.9600
C6—C111.385 (3)C13—H13C0.9600
C6—C71.389 (3)N3—H3B0.8600
C7—C81.382 (3)
N2—C1—N1127.4 (2)C8—C9—C10119.4 (2)
N2—C1—N3118.7 (2)C8—C9—C12121.8 (2)
N1—C1—N3113.84 (19)C10—C9—C12118.8 (2)
N1—C2—C3123.5 (2)C11—C10—C9120.0 (2)
N1—C2—H2A118.3C11—C10—H10A120.0
C3—C2—H2A118.3C9—C10—H10A120.0
C4—C3—C2116.4 (2)C10—C11—C6120.8 (2)
C4—C3—H3A121.8C10—C11—H11A119.6
C2—C3—H3A121.8C6—C11—H11A119.6
N2—C4—C3122.6 (2)O3—C12—O2123.4 (2)
N2—C4—H4A118.7O3—C12—C9124.5 (2)
C3—C4—H4A118.7O2—C12—C9112.1 (2)
O1—C5—N3124.8 (2)O2—C13—H13A109.5
O1—C5—C6120.6 (2)O2—C13—H13B109.5
N3—C5—C6114.57 (19)H13A—C13—H13B109.5
C11—C6—C7119.2 (2)O2—C13—H13C109.5
C11—C6—C5118.7 (2)H13A—C13—H13C109.5
C7—C6—C5121.9 (2)H13B—C13—H13C109.5
C8—C7—C6120.0 (2)C2—N1—C1114.5 (2)
C8—C7—H7A120.0C1—N2—C4115.6 (2)
C6—C7—H7A120.0C5—N3—C1127.31 (19)
C7—C8—C9120.6 (2)C5—N3—H3B116.3
C7—C8—H8A119.7C1—N3—H3B116.3
C9—C8—H8A119.7C12—O2—C13117.09 (19)
D—H···AD—HH···AD···AD—H···A
N3—H3B···N1i0.862.303.104 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3B⋯N1i0.862.303.104 (3)156

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Methyl 4-[N-(5-bromo-pyrimidin-2-yl)carbamo-yl]benzoate.

Authors:  Hui-Ling Hu; Chia-Jun Wu; Chun-Wei Yeh; Jhy-Der Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18
  1 in total

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