Literature DB >> 21837179

[(2S,5R)-1-Methyl-5-phenyl-pyrrolidin-2-yl]diphenyl-methanol.

Julio Zukerman-Schpector, Angélica Venturini Moro, Diogo S Lüdtke, Carlos Roque D Correia, Edward R T Tiekink.   

Abstract

In the title compound, C(24)H(25)NO, the phenyl and diphenyl-methanol substituents are syn to each other. The pyrrolidine ring has an envelope conformation with the flap atom being the C atom bearing the phenyl substituent. The hy-droxy group forms an intra-molecular hydrogen bond with the pyrrolidine N atom, and the phenyl rings lie to same side of the mol-ecule. The crystal packing features C-H⋯π inter-actions. Two slightly displaced co-planar orientations were found for one of the phenyl rings; the major component had a site-occupancy factor of 0.782 (15).

Entities:  

Year:  2011        PMID: 21837179      PMCID: PMC3151780          DOI: 10.1107/S1600536811023403

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the highly enanti­oselective addition of aryl­zinc reagents to aldehydes, see: Yoon & Jacobsen (2003 ▶), Taylor, et al. (2011 ▶). For related structures, see: Moro et al. (2010 ▶); Shabbir et al. (2009 ▶). For details of the synthetic protocols, see: Walsh & Kozlowski (2008 ▶); Paixão, et al. (2008 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C24H25NO M = 343.45 Orthorhombic, a = 9.9672 (2) Å b = 13.3376 (2) Å c = 14.4369 (2) Å V = 1919.22 (5) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 100 K 0.22 × 0.15 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer 24972 measured reflections 2262 independent reflections 1979 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.092 S = 1.05 2262 reflections 255 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: MarvinSketch (Chemaxon, 2010 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811023403/hg5054sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023403/hg5054Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H25NOF(000) = 736
Mr = 343.45Dx = 1.189 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7679 reflections
a = 9.9672 (2) Åθ = 2.5–25.5°
b = 13.3376 (2) ŵ = 0.07 mm1
c = 14.4369 (2) ÅT = 100 K
V = 1919.22 (5) Å3Irregular, colourless
Z = 40.22 × 0.15 × 0.15 mm
Bruker APEXII CCD diffractometer1979 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.039
graphiteθmax = 26.5°, θmin = 2.1°
φ and ω scansh = −12→12
24972 measured reflectionsk = −16→16
2262 independent reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.092w = 1/[σ2(Fo2) + (0.0477P)2 + 0.2712P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2262 reflectionsΔρmax = 0.17 e Å3
255 parametersΔρmin = −0.19 e Å3
0 restraintsAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O0.11866 (14)0.86869 (11)0.21128 (12)0.0486 (4)
H1o0.13870.81660.18160.073*
N0.30995 (17)0.77434 (11)0.11848 (11)0.0360 (4)
C10.3091 (2)0.74937 (15)0.01898 (13)0.0364 (4)
H10.40230.7558−0.00580.044*
C20.2230 (2)0.83278 (15)−0.02138 (14)0.0422 (5)
H2A0.24370.8432−0.08770.051*
H2B0.12640.8169−0.01490.051*
C30.2595 (2)0.92449 (15)0.03493 (14)0.0409 (5)
H3A0.17860.96520.04810.049*
H3B0.32500.96650.00100.049*
C40.3212 (2)0.88486 (13)0.12565 (12)0.0327 (4)
H40.41770.90500.13000.039*
C50.4120 (2)0.71912 (17)0.16989 (15)0.0510 (6)
H5A0.39760.64700.16190.076*
H5B0.40590.73620.23580.076*
H5C0.50110.73710.14650.076*
C120.24357 (19)0.92007 (13)0.21337 (13)0.0333 (4)
C250.2101 (7)1.0299 (5)0.2126 (5)0.0299 (10)0.782 (15)
C260.0798 (6)1.0643 (6)0.2313 (5)0.0443 (11)0.782 (15)
H260.01121.01680.24390.053*0.782 (15)
C270.0485 (7)1.1642 (4)0.2320 (3)0.0504 (12)0.782 (15)
H27−0.04051.18470.24580.060*0.782 (15)
C280.1454 (8)1.2356 (3)0.2127 (3)0.0462 (14)0.782 (15)
H280.12321.30490.21280.055*0.782 (15)
C290.2743 (7)1.2049 (4)0.1933 (3)0.0441 (15)0.782 (15)
H290.34211.25320.18100.053*0.782 (15)
C300.3055 (7)1.1029 (6)0.1918 (5)0.0383 (11)0.782 (15)
H300.39401.08270.17620.046*0.782 (15)
C130.3186 (2)0.89712 (14)0.30368 (13)0.0396 (5)
C140.2559 (3)0.84209 (16)0.37346 (15)0.0563 (7)
H140.16680.81850.36480.068*
C150.3229 (5)0.8218 (2)0.45513 (17)0.0781 (10)
H150.27990.78310.50170.094*
C160.4509 (4)0.8566 (2)0.46997 (18)0.0800 (11)
H160.49590.84260.52650.096*
C170.5129 (3)0.91177 (18)0.40224 (18)0.0656 (8)
H170.60110.93660.41210.079*
C180.4475 (2)0.93152 (15)0.31956 (16)0.0479 (5)
H180.49200.96930.27300.057*
C60.2582 (2)0.64512 (15)−0.00095 (14)0.0399 (5)
C70.3065 (3)0.59257 (18)−0.07668 (16)0.0548 (6)
H70.37590.6207−0.11360.066*
C80.2548 (4)0.4995 (2)−0.0990 (2)0.0711 (8)
H80.28770.4650−0.15190.085*
C90.1568 (3)0.45654 (19)−0.0460 (2)0.0705 (8)
H90.12230.3923−0.06160.085*
C100.1091 (3)0.50665 (18)0.0295 (2)0.0645 (7)
H100.04170.47680.06700.077*
C110.1583 (3)0.60091 (17)0.05168 (18)0.0544 (6)
H110.12300.63560.10370.065*
C190.235 (3)1.043 (2)0.204 (2)0.0299 (10)0.218 (15)
C200.116 (2)1.072 (3)0.238 (2)0.0443 (11)0.218 (15)
H200.04951.02800.26230.053*0.218 (15)
C210.101 (3)1.1852 (17)0.2343 (15)0.0504 (12)0.218 (15)
H210.01871.21670.25090.060*0.218 (15)
C220.207 (3)1.2397 (15)0.2064 (13)0.0462 (14)0.218 (15)
H220.19911.31070.20570.055*0.218 (15)
C230.323 (2)1.1984 (16)0.1794 (14)0.0441 (15)0.218 (15)
H230.39491.24040.16020.053*0.218 (15)
C240.340 (2)1.098 (2)0.179 (2)0.0383 (11)0.218 (15)
H240.42251.06790.16200.046*0.218 (15)
U11U22U33U12U13U23
O0.0386 (8)0.0402 (8)0.0671 (10)−0.0100 (7)0.0144 (7)−0.0061 (7)
N0.0446 (9)0.0298 (8)0.0337 (8)0.0063 (8)−0.0033 (8)−0.0016 (6)
C10.0357 (10)0.0407 (10)0.0327 (10)0.0019 (9)0.0008 (8)−0.0048 (8)
C20.0501 (12)0.0411 (11)0.0355 (10)−0.0006 (10)−0.0064 (9)0.0013 (9)
C30.0459 (12)0.0377 (10)0.0392 (11)−0.0011 (10)−0.0040 (9)0.0025 (8)
C40.0331 (10)0.0304 (9)0.0344 (9)−0.0005 (8)−0.0009 (8)0.0012 (7)
C50.0668 (15)0.0439 (12)0.0423 (12)0.0218 (11)−0.0111 (11)−0.0075 (9)
C120.0318 (9)0.0277 (9)0.0405 (10)−0.0023 (8)0.0049 (8)−0.0005 (8)
C250.034 (3)0.026 (2)0.0295 (18)−0.0063 (17)0.0048 (17)0.0031 (14)
C260.042 (3)0.0436 (18)0.047 (2)0.008 (3)0.005 (3)−0.0021 (14)
C270.055 (3)0.042 (2)0.0541 (15)0.013 (2)0.011 (2)−0.0058 (15)
C280.068 (4)0.0304 (12)0.0402 (14)0.012 (2)0.002 (2)−0.0049 (11)
C290.059 (4)0.0318 (14)0.042 (2)−0.005 (3)−0.006 (2)0.0003 (14)
C300.035 (3)0.0340 (13)0.046 (2)−0.003 (2)−0.002 (2)0.0041 (16)
C130.0591 (13)0.0253 (9)0.0344 (10)0.0074 (9)0.0060 (9)−0.0043 (7)
C140.0913 (18)0.0380 (11)0.0395 (12)0.0125 (13)0.0202 (12)0.0008 (9)
C150.151 (3)0.0489 (15)0.0343 (13)0.030 (2)0.0228 (17)0.0036 (11)
C160.149 (3)0.0556 (16)0.0352 (13)0.042 (2)−0.0182 (17)−0.0086 (12)
C170.091 (2)0.0513 (13)0.0544 (15)0.0220 (15)−0.0274 (14)−0.0158 (12)
C180.0645 (14)0.0357 (11)0.0434 (12)0.0060 (11)−0.0100 (11)−0.0020 (9)
C60.0434 (11)0.0362 (10)0.0401 (11)0.0066 (9)−0.0071 (9)−0.0035 (8)
C70.0678 (15)0.0495 (13)0.0473 (12)0.0054 (13)−0.0030 (12)−0.0123 (10)
C80.090 (2)0.0554 (14)0.0674 (17)0.0117 (15)−0.0144 (17)−0.0271 (13)
C90.0798 (19)0.0372 (12)0.094 (2)0.0030 (13)−0.0359 (18)−0.0136 (14)
C100.0615 (15)0.0442 (13)0.088 (2)−0.0066 (12)−0.0111 (15)0.0042 (14)
C110.0562 (14)0.0433 (12)0.0637 (15)−0.0025 (11)0.0020 (12)−0.0047 (11)
C190.034 (3)0.026 (2)0.0295 (18)−0.0063 (17)0.0048 (17)0.0031 (14)
C200.042 (3)0.0436 (18)0.047 (2)0.008 (3)0.005 (3)−0.0021 (14)
C210.055 (3)0.042 (2)0.0541 (15)0.013 (2)0.011 (2)−0.0058 (15)
C220.068 (4)0.0304 (12)0.0402 (14)0.012 (2)0.002 (2)−0.0049 (11)
C230.059 (4)0.0318 (14)0.042 (2)−0.005 (3)−0.006 (2)0.0003 (14)
C240.035 (3)0.0340 (13)0.046 (2)−0.003 (2)−0.002 (2)0.0041 (16)
O—C121.421 (2)C13—C181.383 (3)
O—H1o0.8401C13—C141.394 (3)
N—C51.459 (3)C14—C151.382 (4)
N—C11.475 (2)C14—H140.9500
N—C41.482 (2)C15—C161.374 (5)
C1—C61.508 (3)C15—H150.9500
C1—C21.521 (3)C16—C171.371 (4)
C1—H11.0000C16—H160.9500
C2—C31.513 (3)C17—C181.385 (3)
C2—H2A0.9900C17—H170.9500
C2—H2B0.9900C18—H180.9500
C3—C41.541 (3)C6—C111.384 (3)
C3—H3A0.9900C6—C71.385 (3)
C3—H3B0.9900C7—C81.383 (4)
C4—C121.557 (3)C7—H70.9500
C4—H41.0000C8—C91.366 (5)
C5—H5A0.9800C8—H80.9500
C5—H5B0.9800C9—C101.364 (4)
C5—H5C0.9800C9—H90.9500
C12—C251.503 (7)C10—C111.387 (3)
C12—C131.534 (3)C10—H100.9500
C12—C191.65 (3)C11—H110.9500
C25—C301.394 (7)C19—C241.32 (3)
C25—C261.403 (9)C19—C201.34 (4)
C26—C271.368 (9)C20—C211.51 (4)
C26—H260.9500C20—H200.9500
C27—C281.385 (6)C21—C221.34 (2)
C27—H270.9500C21—H210.9500
C28—C291.378 (5)C22—C231.34 (2)
C28—H280.9500C22—H220.9500
C29—C301.395 (9)C23—C241.35 (4)
C29—H290.9500C23—H230.9500
C30—H300.9500C24—H240.9500
C12—O—H1o101.6C25—C30—C29121.7 (5)
C5—N—C1112.69 (16)C25—C30—H30119.1
C5—N—C4114.43 (16)C29—C30—H30119.1
C1—N—C4107.05 (14)C18—C13—C14118.1 (2)
N—C1—C6113.34 (16)C18—C13—C12121.84 (18)
N—C1—C2102.20 (16)C14—C13—C12120.0 (2)
C6—C1—C2114.29 (17)C15—C14—C13120.2 (3)
N—C1—H1108.9C15—C14—H14119.9
C6—C1—H1108.9C13—C14—H14119.9
C2—C1—H1108.9C16—C15—C14121.0 (3)
C3—C2—C1104.46 (16)C16—C15—H15119.5
C3—C2—H2A110.9C14—C15—H15119.5
C1—C2—H2A110.9C17—C16—C15119.3 (3)
C3—C2—H2B110.9C17—C16—H16120.4
C1—C2—H2B110.9C15—C16—H16120.4
H2A—C2—H2B108.9C16—C17—C18120.3 (3)
C2—C3—C4105.99 (16)C16—C17—H17119.8
C2—C3—H3A110.5C18—C17—H17119.8
C4—C3—H3A110.5C13—C18—C17121.1 (2)
C2—C3—H3B110.5C13—C18—H18119.5
C4—C3—H3B110.5C17—C18—H18119.5
H3A—C3—H3B108.7C11—C6—C7117.9 (2)
N—C4—C3104.56 (15)C11—C6—C1122.02 (19)
N—C4—C12108.61 (15)C7—C6—C1120.0 (2)
C3—C4—C12112.90 (15)C8—C7—C6120.6 (3)
N—C4—H4110.2C8—C7—H7119.7
C3—C4—H4110.2C6—C7—H7119.7
C12—C4—H4110.2C9—C8—C7120.8 (3)
N—C5—H5A109.5C9—C8—H8119.6
N—C5—H5B109.5C7—C8—H8119.6
H5A—C5—H5B109.5C10—C9—C8119.4 (3)
N—C5—H5C109.5C10—C9—H9120.3
H5A—C5—H5C109.5C8—C9—H9120.3
H5B—C5—H5C109.5C9—C10—C11120.3 (3)
O—C12—C25106.0 (3)C9—C10—H10119.8
O—C12—C13110.43 (16)C11—C10—H10119.8
C25—C12—C13108.0 (3)C6—C11—C10120.9 (2)
O—C12—C4105.84 (15)C6—C11—H11119.5
C25—C12—C4113.5 (3)C10—C11—H11119.5
C13—C12—C4112.86 (15)C24—C19—C20130 (3)
O—C12—C19115.5 (11)C24—C19—C12122 (2)
C13—C12—C19107.2 (12)C20—C19—C12108 (2)
C4—C12—C19105.0 (10)C19—C20—C21111 (2)
C30—C25—C26116.4 (6)C19—C20—H20124.5
C30—C25—C12122.1 (5)C21—C20—H20124.5
C26—C25—C12121.5 (5)C22—C21—C20118.2 (18)
C27—C26—C25122.1 (5)C22—C21—H21120.9
C27—C26—H26119.0C20—C21—H21120.9
C25—C26—H26119.0C23—C22—C21123.0 (18)
C26—C27—C28120.6 (4)C23—C22—H22118.5
C26—C27—H27119.7C21—C22—H22118.5
C28—C27—H27119.7C22—C23—C24121 (2)
C29—C28—C27119.1 (4)C22—C23—H23119.5
C29—C28—H28120.4C24—C23—H23119.5
C27—C28—H28120.4C19—C24—C23117 (2)
C28—C29—C30120.0 (4)C19—C24—H24121.7
C28—C29—H29120.0C23—C24—H24121.7
C30—C29—H29120.0
C5—N—C1—C670.2 (2)O—C12—C13—C14−6.8 (2)
C4—N—C1—C6−163.11 (17)C25—C12—C13—C14108.7 (3)
C5—N—C1—C2−166.29 (18)C4—C12—C13—C14−124.99 (18)
C4—N—C1—C2−39.6 (2)C19—C12—C13—C14119.8 (10)
N—C1—C2—C336.6 (2)C18—C13—C14—C15−1.0 (3)
C6—C1—C2—C3159.41 (17)C12—C13—C14—C15−179.62 (19)
C1—C2—C3—C4−20.7 (2)C13—C14—C15—C161.2 (4)
C5—N—C4—C3152.32 (17)C14—C15—C16—C17−0.4 (4)
C1—N—C4—C326.7 (2)C15—C16—C17—C18−0.4 (4)
C5—N—C4—C12−86.9 (2)C14—C13—C18—C170.2 (3)
C1—N—C4—C12147.48 (16)C12—C13—C18—C17178.72 (19)
C2—C3—C4—N−3.0 (2)C16—C17—C18—C130.6 (3)
C2—C3—C4—C12−120.85 (18)N—C1—C6—C1134.1 (3)
N—C4—C12—O−45.89 (19)C2—C1—C6—C11−82.4 (2)
C3—C4—C12—O69.60 (19)N—C1—C6—C7−149.2 (2)
N—C4—C12—C25−161.7 (3)C2—C1—C6—C794.2 (2)
C3—C4—C12—C25−46.2 (4)C11—C6—C7—C80.8 (3)
N—C4—C12—C1375.00 (19)C1—C6—C7—C8−176.0 (2)
C3—C4—C12—C13−169.51 (16)C6—C7—C8—C9−1.3 (4)
N—C4—C12—C19−168.5 (12)C7—C8—C9—C100.5 (4)
C3—C4—C12—C19−53.1 (12)C8—C9—C10—C110.7 (4)
O—C12—C25—C30−164.1 (6)C7—C6—C11—C100.4 (3)
C13—C12—C25—C3077.5 (7)C1—C6—C11—C10177.2 (2)
C4—C12—C25—C30−48.4 (8)C9—C10—C11—C6−1.2 (4)
C19—C12—C25—C30−10 (7)O—C12—C19—C24−161 (3)
O—C12—C25—C2614.7 (7)C25—C12—C19—C24172 (10)
C13—C12—C25—C26−103.7 (7)C13—C12—C19—C2476 (3)
C4—C12—C25—C26130.4 (6)C4—C12—C19—C24−45 (3)
C19—C12—C25—C26169 (8)O—C12—C19—C2028 (3)
C30—C25—C26—C27−2.0 (11)C25—C12—C19—C201(6)
C12—C25—C26—C27179.2 (6)C13—C12—C19—C20−95 (2)
C25—C26—C27—C280.9 (10)C4—C12—C19—C20144 (2)
C26—C27—C28—C29−0.4 (7)C24—C19—C20—C219(5)
C27—C28—C29—C301.0 (7)C12—C19—C20—C21179 (2)
C26—C25—C30—C292.6 (11)C19—C20—C21—C22−6(4)
C12—C25—C30—C29−178.5 (5)C20—C21—C22—C232(4)
C28—C29—C30—C25−2.2 (9)C21—C22—C23—C240(4)
O—C12—C13—C18174.73 (17)C20—C19—C24—C23−7(5)
C25—C12—C13—C18−69.8 (3)C12—C19—C24—C23−176 (2)
C4—C12—C13—C1856.5 (2)C22—C23—C24—C192(4)
C19—C12—C13—C18−58.7 (10)
Cg is the centroid of the C6–C11 ring.
D—H···AD—HH···AD···AD—H···A
O—H1O···N0.842.022.648 (2)132
C28—H28···Oi0.952.783.359 (7)120
C17—H17···Cgii0.952.923.776 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C6–C11 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O—H1O⋯N0.842.022.648 (2)132
C28—H28⋯Oi0.952.783.359 (7)120
C17—H17⋯Cgii0.952.923.776 (3)150

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Privileged chiral catalysts.

Authors:  Tehshik P Yoon; Eric N Jacobsen
Journal:  Science       Date:  2003-03-14       Impact factor: 47.728

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Pattern-based recognition for the rapid determination of identity, concentration, and enantiomeric excess of subtly different threo diols.

Authors:  Shagufta H Shabbir; Leo A Joyce; Gabriella M da Cruz; Vincent M Lynch; Steven Sorey; Eric V Anslyn
Journal:  J Am Chem Soc       Date:  2009-09-16       Impact factor: 15.419

  3 in total

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