Literature DB >> 21837178

tert-Butyl N-((1S)-2-hy-droxy-1-{N'-[(1E)-4-meth-oxy-benzyl-idene]hydrazinecarbon-yl}eth-yl)carbamate.

Alessandra C Pinheiro, Marcus V N de Souza, Edward R T Tiekink, Solange M S V Wardell, James L Wardell.   

Abstract

The mol-ecule of the title compound, C(16)H(23)N(3)O(5), is twisted about the chiral C atom, the dihedral angle formed between the amide residues being 79.6 (3)°. The conformation about the imine bond [1.278 (5) Å] is E. In the crystal, O-H⋯O and N-H⋯O hydrogen bonding between the hy-droxy, amine and carbonyl groups leads to the formation of supra-molecular layers, which stack along the c-axis direction.

Entities:  

Year:  2011        PMID: 21837178      PMCID: PMC3151906          DOI: 10.1107/S1600536811024263

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of l-serine derivatives in anti-tumour therapy, see: Jiao et al. (2009 ▶); Yakura et al. (2007 ▶). For background to N-acyl­hydrazone derivatives from l-serine for anti-tumour testing, see: Pinheiro et al. (2010 ▶, 2011 ▶); de Souza et al. (2010 ▶); Howie et al. (2011 ▶).

Experimental

Crystal data

C16H23N3O5 M = 337.38 Triclinic, a = 5.3323 (4) Å b = 5.7200 (4) Å c = 14.3319 (10) Å α = 79.919 (4)° β = 83.686 (4)° γ = 76.505 (4)° V = 417.41 (5) Å3 Z = 1 Mo Kα radiation μ = 0.10 mm−1 T = 120 K 0.16 × 0.07 × 0.04 mm

Data collection

Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.887, T max = 1.000 7495 measured reflections 1900 independent reflections 1661 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.113 S = 1.09 1900 reflections 230 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.25 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024263/hb5921sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024263/hb5921Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H23N3O5Z = 1
Mr = 337.38F(000) = 180
Triclinic, P1Dx = 1.342 Mg m3
Hall symbol: P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.3323 (4) ÅCell parameters from 14323 reflections
b = 5.7200 (4) Åθ = 2.9–27.5°
c = 14.3319 (10) ŵ = 0.10 mm1
α = 79.919 (4)°T = 120 K
β = 83.686 (4)°Block, colourless
γ = 76.505 (4)°0.16 × 0.07 × 0.04 mm
V = 417.41 (5) Å3
Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer1900 independent reflections
Radiation source: Bruker-Nonius FR591 rotating anode1661 reflections with I > 2σ(I)
graphiteRint = 0.046
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.7°
φ and ω scansh = −6→6
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −7→7
Tmin = 0.887, Tmax = 1.000l = −18→18
7495 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0304P)2 + 0.3732P] where P = (Fo2 + 2Fc2)/3
1900 reflections(Δ/σ)max < 0.001
230 parametersΔρmax = 0.24 e Å3
6 restraintsΔρmin = −0.25 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.6917 (5)0.8513 (5)0.7563 (2)0.0280 (7)
O20.9933 (5)0.3081 (5)0.3426 (2)0.0259 (6)
O30.4988 (5)0.1450 (5)0.3533 (2)0.0244 (6)
H3O0.340 (3)0.190 (9)0.369 (3)0.037*
O40.4967 (5)0.9626 (5)0.06608 (19)0.0228 (6)
O50.2010 (5)0.7831 (5)0.1623 (2)0.0250 (6)
N11.0286 (6)0.6618 (6)0.4406 (2)0.0215 (7)
N20.8274 (6)0.6827 (6)0.3836 (2)0.0209 (7)
H2N0.709 (6)0.818 (5)0.373 (3)0.025*
N30.6282 (6)0.6919 (6)0.1906 (2)0.0212 (7)
H3N0.777 (5)0.731 (8)0.171 (3)0.025*
C11.2010 (7)0.8412 (7)0.5502 (3)0.0194 (8)
C21.4019 (7)0.6394 (7)0.5725 (3)0.0211 (8)
H21.42440.50280.54060.025*
C31.5699 (7)0.6361 (7)0.6412 (3)0.0222 (8)
H31.70530.49750.65600.027*
C41.5392 (7)0.8349 (7)0.6876 (3)0.0229 (8)
C51.3430 (8)1.0405 (7)0.6634 (3)0.0256 (9)
H51.32421.17930.69370.031*
C61.1777 (8)1.0429 (7)0.5961 (3)0.0251 (9)
H61.04531.18360.58050.030*
C71.8959 (8)0.6473 (8)0.7822 (3)0.0280 (9)
H7A1.82490.50170.80270.042*
H7B1.98270.67730.83430.042*
H7C2.02070.62250.72740.042*
C81.0108 (8)0.8446 (7)0.4829 (3)0.0229 (8)
H80.87380.98330.47090.027*
C90.8245 (7)0.4972 (7)0.3388 (3)0.0195 (7)
C100.5925 (7)0.5327 (7)0.2797 (3)0.0188 (7)
H100.43360.61170.31610.023*
C110.5605 (7)0.2847 (7)0.2643 (3)0.0226 (8)
H11A0.42060.30630.22140.027*
H11B0.72270.19720.23390.027*
C120.4209 (7)0.8111 (7)0.1416 (3)0.0188 (7)
C130.3072 (7)1.1111 (7)−0.0009 (3)0.0213 (8)
C140.4761 (8)1.2529 (7)−0.0707 (3)0.0264 (9)
H14A0.56071.3426−0.03600.040*
H14B0.36841.3678−0.11720.040*
H14C0.60791.1395−0.10370.040*
C150.0964 (8)1.2826 (7)0.0503 (3)0.0250 (8)
H15A−0.01521.18860.09200.038*
H15B−0.00701.40080.00340.038*
H15C0.17591.36880.08820.038*
C160.1993 (8)0.9468 (7)−0.0514 (3)0.0244 (8)
H16A0.34230.8281−0.07700.037*
H16B0.09951.0457−0.10360.037*
H16C0.08680.8610−0.00630.037*
U11U22U33U12U13U23
O10.0280 (15)0.0329 (16)0.0243 (15)−0.0048 (13)−0.0056 (12)−0.0074 (12)
O20.0193 (14)0.0193 (13)0.0391 (17)−0.0037 (11)−0.0067 (12)−0.0026 (12)
O30.0160 (13)0.0238 (14)0.0286 (15)−0.0031 (11)−0.0011 (11)0.0066 (11)
O40.0181 (13)0.0237 (14)0.0246 (14)−0.0042 (11)−0.0059 (11)0.0041 (11)
O50.0229 (15)0.0279 (15)0.0241 (15)−0.0076 (12)−0.0041 (11)0.0006 (12)
N10.0212 (16)0.0245 (16)0.0186 (16)−0.0052 (13)−0.0055 (12)−0.0005 (13)
N20.0183 (16)0.0231 (17)0.0203 (17)−0.0016 (13)−0.0073 (13)−0.0007 (13)
N30.0152 (15)0.0221 (17)0.0242 (17)−0.0044 (12)−0.0026 (13)0.0034 (13)
C10.0201 (18)0.0232 (19)0.0155 (18)−0.0087 (15)−0.0010 (14)0.0007 (14)
C20.0208 (19)0.0228 (19)0.0201 (19)−0.0046 (16)0.0018 (15)−0.0072 (15)
C30.0189 (19)0.026 (2)0.0206 (19)−0.0025 (15)−0.0029 (15)−0.0012 (16)
C40.0205 (19)0.027 (2)0.022 (2)−0.0094 (16)0.0011 (16)0.0001 (16)
C50.028 (2)0.0212 (19)0.027 (2)−0.0024 (16)−0.0023 (17)−0.0058 (16)
C60.026 (2)0.0185 (18)0.029 (2)0.0007 (15)−0.0069 (17)−0.0021 (15)
C70.025 (2)0.035 (2)0.023 (2)−0.0076 (18)−0.0057 (16)0.0015 (17)
C80.0228 (19)0.0221 (19)0.022 (2)−0.0055 (15)−0.0005 (15)0.0016 (15)
C90.0176 (18)0.0182 (17)0.0209 (19)−0.0059 (14)0.0027 (14)0.0020 (14)
C100.0157 (17)0.0221 (18)0.0180 (18)−0.0044 (14)−0.0016 (14)−0.0008 (14)
C110.023 (2)0.0199 (19)0.025 (2)−0.0073 (15)−0.0042 (16)0.0023 (15)
C120.0202 (19)0.0202 (18)0.0161 (18)−0.0072 (14)−0.0012 (14)0.0001 (14)
C130.0178 (18)0.0227 (19)0.0209 (19)−0.0029 (15)−0.0051 (15)0.0042 (15)
C140.027 (2)0.022 (2)0.027 (2)−0.0028 (16)−0.0056 (17)0.0027 (16)
C150.027 (2)0.022 (2)0.024 (2)−0.0027 (16)−0.0046 (16)−0.0024 (15)
C160.026 (2)0.0255 (19)0.022 (2)−0.0068 (16)−0.0025 (16)−0.0036 (16)
O1—C41.372 (5)C5—H50.9500
O1—C71.425 (5)C6—H60.9500
O2—C91.233 (5)C7—H7A0.9800
O3—C111.431 (4)C7—H7B0.9800
O3—H3O0.841 (10)C7—H7C0.9800
O4—C121.350 (4)C8—H80.9500
O4—C131.480 (4)C9—C101.530 (5)
O5—C121.218 (4)C10—C111.524 (5)
N1—C81.278 (5)C10—H101.0000
N1—N21.389 (4)C11—H11A0.9900
N2—C91.336 (5)C11—H11B0.9900
N2—H2N0.880 (10)C13—C151.523 (5)
N3—C121.353 (5)C13—C161.523 (5)
N3—C101.455 (5)C13—C141.526 (5)
N3—H3N0.880 (10)C14—H14A0.9800
C1—C21.397 (5)C14—H14B0.9800
C1—C61.401 (6)C14—H14C0.9800
C1—C81.469 (5)C15—H15A0.9800
C2—C31.397 (5)C15—H15B0.9800
C2—H20.9500C15—H15C0.9800
C3—C41.385 (5)C16—H16A0.9800
C3—H30.9500C16—H16B0.9800
C4—C51.400 (6)C16—H16C0.9800
C5—C61.372 (6)
C4—O1—C7117.4 (3)N3—C10—C11112.2 (3)
C11—O3—H3O109 (3)N3—C10—C9109.8 (3)
C12—O4—C13120.5 (3)C11—C10—C9109.1 (3)
C8—N1—N2114.4 (3)N3—C10—H10108.6
C9—N2—N1118.8 (3)C11—C10—H10108.6
C9—N2—H2N119 (3)C9—C10—H10108.6
N1—N2—H2N122 (3)O3—C11—C10110.0 (3)
C12—N3—C10119.8 (3)O3—C11—H11A109.7
C12—N3—H3N117 (3)C10—C11—H11A109.7
C10—N3—H3N122 (3)O3—C11—H11B109.7
C2—C1—C6118.3 (4)C10—C11—H11B109.7
C2—C1—C8122.2 (3)H11A—C11—H11B108.2
C6—C1—C8119.5 (3)O5—C12—N3124.9 (3)
C1—C2—C3120.8 (3)O5—C12—O4125.6 (3)
C1—C2—H2119.6N3—C12—O4109.5 (3)
C3—C2—H2119.6O4—C13—C15110.6 (3)
C4—C3—C2120.0 (3)O4—C13—C16110.2 (3)
C4—C3—H3120.0C15—C13—C16112.6 (3)
C2—C3—H3120.0O4—C13—C14101.7 (3)
O1—C4—C3125.0 (3)C15—C13—C14110.9 (3)
O1—C4—C5115.6 (3)C16—C13—C14110.4 (3)
C3—C4—C5119.4 (3)C13—C14—H14A109.5
C6—C5—C4120.4 (4)C13—C14—H14B109.5
C6—C5—H5119.8H14A—C14—H14B109.5
C4—C5—H5119.8C13—C14—H14C109.5
C5—C6—C1121.0 (4)H14A—C14—H14C109.5
C5—C6—H6119.5H14B—C14—H14C109.5
C1—C6—H6119.5C13—C15—H15A109.5
O1—C7—H7A109.5C13—C15—H15B109.5
O1—C7—H7B109.5H15A—C15—H15B109.5
H7A—C7—H7B109.5C13—C15—H15C109.5
O1—C7—H7C109.5H15A—C15—H15C109.5
H7A—C7—H7C109.5H15B—C15—H15C109.5
H7B—C7—H7C109.5C13—C16—H16A109.5
N1—C8—C1120.4 (3)C13—C16—H16B109.5
N1—C8—H8119.8H16A—C16—H16B109.5
C1—C8—H8119.8C13—C16—H16C109.5
O2—C9—N2124.3 (4)H16A—C16—H16C109.5
O2—C9—C10120.3 (3)H16B—C16—H16C109.5
N2—C9—C10115.4 (3)
C8—N1—N2—C9−177.8 (3)N1—N2—C9—C10178.5 (3)
C6—C1—C2—C32.0 (6)C12—N3—C10—C1179.8 (4)
C8—C1—C2—C3−176.0 (4)C12—N3—C10—C9−158.7 (3)
C1—C2—C3—C4−0.3 (6)O2—C9—C10—N3−102.2 (4)
C7—O1—C4—C3−0.5 (5)N2—C9—C10—N377.5 (4)
C7—O1—C4—C5−179.2 (4)O2—C9—C10—C1121.1 (5)
C2—C3—C4—O1179.7 (4)N2—C9—C10—C11−159.2 (3)
C2—C3—C4—C5−1.6 (6)N3—C10—C11—O3−173.9 (3)
O1—C4—C5—C6−179.4 (4)C9—C10—C11—O364.3 (4)
C3—C4—C5—C61.8 (6)C10—N3—C12—O5−5.9 (6)
C4—C5—C6—C1−0.1 (6)C10—N3—C12—O4174.9 (3)
C2—C1—C6—C5−1.8 (6)C13—O4—C12—O5−0.7 (5)
C8—C1—C6—C5176.2 (4)C13—O4—C12—N3178.6 (3)
N2—N1—C8—C1176.1 (3)C12—O4—C13—C1560.9 (4)
C2—C1—C8—N1−1.8 (5)C12—O4—C13—C16−64.3 (4)
C6—C1—C8—N1−179.8 (4)C12—O4—C13—C14178.7 (3)
N1—N2—C9—O2−1.9 (5)
D—H···AD—HH···AD···AD—H···A
O3—H3o···O2i0.84 (3)1.87 (3)2.651 (4)153 (4)
N2—H2n···O3ii0.88 (3)1.93 (3)2.803 (4)169 (3)
N3—H3n···O5iii0.88 (3)2.34 (3)3.188 (4)164 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3o⋯O2i0.84 (3)1.87 (3)2.651 (4)153 (4)
N2—H2n⋯O3ii0.88 (3)1.93 (3)2.803 (4)169 (3)
N3—H3n⋯O5iii0.88 (3)2.34 (3)3.188 (4)164 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Total synthesis of (+)-conagenin.

Authors:  Xiao-Zhen Jiao; Li-Ping Wang; Qiong Xiao; Ping Xie; Xiao-Tian Liang
Journal:  J Asian Nat Prod Res       Date:  2009       Impact factor: 1.569

3.  Benzyl N-((S)-2-hydr-oxy-1-{N'-[(E)-2-methoxy-benzyl-idene]hydrazinecarbon-yl}eth-yl)carbamate from synchrotron data.

Authors:  Alessandra C Pinheiro; Marcus V N de Souza; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31

4.  tert-Butyl N-{(1S)-1-[(2,4-dihy-droxy-benzyl-idene)hydrazinecarbon-yl]-2-hy-droxy-eth-yl}carbamate ethanol monosolvate.

Authors:  Alessandra C Pinheiro; Marcus V N de Souza; Edward R T Tiekink; Solange M S V Wardell; James L Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-09

5.  Benzyl N-[(S)-2-hy-droxy-1-({[(E)-2-hy-droxy-4-meth-oxy-benzyl-idene]hydrazin-yl}carbon-yl)eth-yl]carbamate.

Authors:  Marcus V N de Souza; Alessandra C Pinheiro; Edward R T Tiekink; Solange M S V Wardell; James L Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-20
  5 in total
  3 in total

1.  Benzyl N-(2-hy-droxy-1-{N'-[(1E)-2-hy-droxy-benzyl-idene]hydrazinecarbon-yl}eth-yl)carbamate.

Authors:  Edward R T Tiekink; Marcus V N de Souza; Alessandra C Pinheiro; Solange M S V Wardell; James L Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

2.  Benzyl N-(1-{N'-[(E)-2-chloro-benzyl-idene]hydrazinecarbon-yl}-2-hy-droxy-eth-yl)carbamate.

Authors:  Marcus V N de Souza; Alessandra C Pinheiro; Edward R T Tiekink; Solange M S V Wardell; James L Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

3.  tert-Butyl N-((1S)-2-hy-droxy-1-{N'-[(E)-2-hy-droxy-4-meth-oxy-benzyl-idene]hydrazinecarbon-yl}eth-yl)carbamate.

Authors:  James L Wardell; Marcus V N de Souza; Alessandra C Pinheiro; Edward R T Tiekink; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02
  3 in total

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