Literature DB >> 21837143

[6]Cyclo-2,7-naphthyl-ene: a redetermination.

Waka Nakanishi1, Jing Yang Xue, Tomoaki Yoshioka, Hiroyuki Isobe.   

Abstract

Single crystals of a macrocyclic hydro-carbon, [6]cyclo-2,7-naphthyl-ene ([6]CNAP, C(60)H(36)) were prepared from anthracene melt with a prolonged time for the recrystallization. The crystal of improved quality led to the correction of the space-group assignment to Cmca from [Formula: see text] in the original determination [Nakanishi et al. (2011 ▶) Angew. Chem. Int. Ed.50, 5323-5326] and the refinement of anisotropic displacement parameters of all C atoms. The refined mol-ecular structure with C(2h) point symmetry indicated that the strain on the naphthyl rings of [6]CNAP is smallest among the congeners. Despite the large macrocyclic structure, mol-ecules are packed in a ubiquitous herringbone motif. A short C-C distance of 3.119 (4) Å was found in the stacking direction, and a short C-H distance of 2.80 Å was found in the inter-columnar contact.

Entities:  

Year:  2011        PMID: 21837143      PMCID: PMC3152034          DOI: 10.1107/S1600536811023427

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Superior quality crystals of the title compound were obtained by re-optimizing the crystallization conditions. For the synthesis and preceding crystallographic analysis, see: Nakanishi et al. (2011 ▶). For the original method of recrystallization, see: Miyahara & Shimizu (2001 ▶). For a review of C—H⋯π contacts in crystals, see: Nishio (2004 ▶).

Experimental

Crystal data

C60H36 M = 756.89 Orthorhombic, a = 34.224 (6) Å b = 7.4629 (14) Å c = 15.131 (3) Å V = 3864.7 (12) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 100 K 0.40 × 0.12 × 0.06 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.686, T max = 0.996 20522 measured reflections 2234 independent reflections 1667 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.181 S = 1.06 2234 reflections 139 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and Yadokari-XG 2009 (Kabuto et al., 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811023427/nr2007sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023427/nr2007Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C60H36F(000) = 1584
Mr = 756.89Dx = 1.301 Mg m3
Orthorhombic, CmcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2bc 2Cell parameters from 5445 reflections
a = 34.224 (6) Åθ = 2.4–27.2°
b = 7.4629 (14) ŵ = 0.07 mm1
c = 15.131 (3) ÅT = 100 K
V = 3864.7 (12) Å3Plate, colourless
Z = 40.40 × 0.12 × 0.06 mm
Bruker APEXII CCD area-detector diffractometer2234 independent reflections
Radiation source: Bruker TXS fine-focus rotating anode1667 reflections with I > 2σ(I)
Bruker Helios multilayer confocal mirrorRint = 0.035
Detector resolution: 8.333 pixels mm-1θmax = 27.5°, θmin = 2.4°
φ and ω scansh = −43→43
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −9→9
Tmin = 0.686, Tmax = 0.996l = −19→19
20522 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.181H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0565P)2 + 7.0687P] where P = (Fo2 + 2Fc2)/3
2234 reflections(Δ/σ)max < 0.001
139 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.28550 (9)0.7008 (6)0.37933 (17)0.0855 (12)
H10.26230.66340.35040.103*
C20.28488 (8)0.8521 (5)0.43007 (18)0.0805 (11)
H20.26100.91540.43710.097*
C30.31917 (7)0.9174 (4)0.47282 (14)0.0599 (7)
C40.35317 (7)0.8204 (3)0.46178 (14)0.0521 (6)
H30.37640.86130.48970.062*
C50.35467 (8)0.6627 (4)0.41049 (14)0.0546 (7)
C60.32004 (9)0.5987 (5)0.36887 (15)0.0705 (9)
C70.32231 (11)0.4362 (5)0.32059 (16)0.0842 (12)
H40.29970.39180.29160.101*
C80.35645 (11)0.3425 (4)0.31496 (15)0.0777 (11)
H50.35700.23320.28280.093*
C90.39145 (9)0.4048 (3)0.35623 (14)0.0599 (8)
C100.38962 (8)0.5646 (3)0.40197 (13)0.0518 (6)
H60.41270.61000.42860.062*
C110.46345 (13)0.0185 (3)0.35550 (17)0.0872 (12)
H70.4628−0.10880.35620.105*
C120.42913 (13)0.1103 (4)0.35358 (16)0.0781 (11)
H80.40520.04600.35220.094*
C130.42846 (10)0.3024 (3)0.35367 (14)0.0602 (8)
C140.46407 (8)0.3892 (3)0.35413 (14)0.0542 (7)
H90.46430.51650.35340.065*
C150.50000.2979 (4)0.35555 (19)0.0556 (10)
C160.50000.1066 (4)0.3565 (2)0.0708 (13)
U11U22U33U12U13U23
C10.0610 (18)0.162 (4)0.0339 (13)−0.048 (2)−0.0068 (12)0.0195 (17)
C20.0528 (16)0.151 (3)0.0375 (13)−0.0189 (18)−0.0027 (11)0.0297 (17)
C30.0481 (13)0.100 (2)0.0322 (11)−0.0087 (13)−0.0009 (9)0.0234 (11)
C40.0553 (14)0.0695 (15)0.0314 (10)−0.0175 (12)−0.0064 (9)0.0157 (10)
C50.0663 (16)0.0706 (16)0.0270 (10)−0.0286 (13)−0.0066 (10)0.0130 (10)
C60.0719 (18)0.114 (2)0.0260 (10)−0.0495 (17)−0.0031 (10)0.0138 (13)
C70.094 (2)0.129 (3)0.0301 (12)−0.074 (2)−0.0006 (13)0.0028 (15)
C80.116 (3)0.088 (2)0.0281 (11)−0.071 (2)0.0065 (14)−0.0042 (12)
C90.098 (2)0.0553 (14)0.0264 (10)−0.0412 (15)−0.0006 (11)0.0023 (9)
C100.0732 (16)0.0537 (13)0.0286 (10)−0.0308 (12)−0.0056 (10)0.0062 (9)
C110.197 (4)0.0250 (12)0.0396 (13)−0.0237 (18)0.0074 (18)−0.0075 (10)
C120.160 (3)0.0402 (14)0.0340 (12)−0.0427 (18)0.0088 (16)−0.0048 (10)
C130.114 (2)0.0398 (12)0.0267 (10)−0.0318 (14)0.0039 (12)−0.0045 (9)
C140.106 (2)0.0247 (9)0.0321 (10)−0.0139 (11)0.0003 (11)−0.0036 (8)
C150.114 (3)0.0230 (14)0.0300 (14)0.0000.000−0.0045 (11)
C160.157 (4)0.0237 (15)0.0318 (16)0.0000.000−0.0046 (12)
C1—C21.365 (5)C8—H50.9500
C1—C61.416 (5)C9—C101.381 (3)
C1—H10.9500C9—C131.480 (4)
C2—C31.426 (4)C10—H60.9500
C2—H20.9500C11—C121.360 (5)
C3—C41.380 (3)C11—C161.413 (4)
C3—C3i1.482 (6)C11—H70.9500
C4—C51.410 (4)C12—C131.434 (4)
C4—H30.9500C12—H80.9500
C5—C101.408 (4)C13—C141.380 (4)
C5—C61.425 (3)C14—C151.406 (3)
C6—C71.418 (5)C14—H90.9500
C7—C81.364 (5)C15—C14ii1.406 (3)
C7—H40.9500C15—C161.428 (4)
C8—C91.429 (4)C16—C11ii1.413 (4)
C2—C1—C6121.4 (3)C10—C9—C8117.5 (3)
C2—C1—H1119.3C10—C9—C13119.9 (2)
C6—C1—H1119.3C8—C9—C13122.6 (3)
C1—C2—C3121.7 (3)C9—C10—C5122.3 (2)
C1—C2—H2119.2C9—C10—H6118.9
C3—C2—H2119.2C5—C10—H6118.9
C4—C3—C2117.4 (3)C12—C11—C16122.0 (2)
C4—C3—C3i120.22 (15)C12—C11—H7119.0
C2—C3—C3i122.4 (2)C16—C11—H7119.0
C3—C4—C5122.3 (2)C11—C12—C13121.2 (3)
C3—C4—H3118.8C11—C12—H8119.4
C5—C4—H3118.8C13—C12—H8119.4
C10—C5—C4121.0 (2)C14—C13—C12117.1 (3)
C10—C5—C6119.4 (3)C14—C13—C9120.9 (2)
C4—C5—C6119.5 (3)C12—C13—C9122.0 (3)
C1—C6—C7124.3 (3)C13—C14—C15123.0 (2)
C1—C6—C5117.7 (3)C13—C14—H9118.5
C7—C6—C5118.0 (3)C15—C14—H9118.5
C8—C7—C6121.2 (3)C14ii—C15—C14122.0 (3)
C8—C7—H4119.4C14ii—C15—C16118.99 (13)
C6—C7—H4119.4C14—C15—C16118.99 (13)
C7—C8—C9121.6 (3)C11ii—C16—C11124.5 (4)
C7—C8—H5119.2C11ii—C16—C15117.71 (19)
C9—C8—H5119.2C11—C16—C15117.71 (19)
C6—C1—C2—C31.9 (4)C4—C5—C10—C9176.39 (19)
C1—C2—C3—C4−0.7 (4)C6—C5—C10—C9−1.7 (3)
C1—C2—C3—C3i179.2 (3)C16—C11—C12—C13−0.9 (4)
C2—C3—C4—C50.1 (3)C11—C12—C13—C141.2 (4)
C3i—C3—C4—C5−179.8 (2)C11—C12—C13—C9−176.8 (2)
C3—C4—C5—C10−178.7 (2)C10—C9—C13—C14−33.1 (3)
C3—C4—C5—C6−0.6 (3)C8—C9—C13—C14148.8 (2)
C2—C1—C6—C7177.0 (2)C10—C9—C13—C12144.8 (2)
C2—C1—C6—C5−2.3 (4)C8—C9—C13—C12−33.2 (3)
C10—C5—C6—C1179.8 (2)C12—C13—C14—C15−0.8 (3)
C4—C5—C6—C11.7 (3)C9—C13—C14—C15177.2 (2)
C10—C5—C6—C70.4 (3)C13—C14—C15—C14ii178.65 (17)
C4—C5—C6—C7−177.7 (2)C13—C14—C15—C160.1 (4)
C1—C6—C7—C8−178.5 (2)C12—C11—C16—C11ii−177.8 (2)
C5—C6—C7—C80.8 (4)C12—C11—C16—C150.1 (4)
C6—C7—C8—C9−0.9 (4)C14ii—C15—C16—C11ii−0.3 (4)
C7—C8—C9—C10−0.3 (3)C14—C15—C16—C11ii178.3 (2)
C7—C8—C9—C13177.8 (2)C14ii—C15—C16—C11−178.3 (2)
C8—C9—C10—C51.6 (3)C14—C15—C16—C110.3 (4)
C13—C9—C10—C5−176.57 (19)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [n]Cyclo-2,7-naphthylenes: synthesis and isolation of macrocyclic aromatic hydrocarbons having bipolar carrier transport ability.

Authors:  Waka Nakanishi; Tomoaki Yoshioka; Hideo Taka; Jing Yang Xue; Hiroshi Kita; Hiroyuki Isobe
Journal:  Angew Chem Int Ed Engl       Date:  2011-04-26       Impact factor: 15.336

  2 in total

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