Literature DB >> 21837127

(S)-2-[1-(4-Bromo-phen-yl)-1-hy-droxy-ethyl]-5,5-dimethyl-1,3,2-dioxaphos-phinane 2-oxide.

Chubei Wang1, Hao Peng, Hongwu He.   

Abstract

In the crystal structure of the title mol-ecule, C(13)H(18)BrO(4)P, the phospho-nate ring adopts a chair conformation. Mol-ecules are linked by an O-H⋯O hydrogen bond [O⋯O = 2.780 (3) Å] to form chains parallel to the c axis. Two C-H⋯O inter-actions help to stabilize the crystal structure.

Entities:  

Year:  2011        PMID: 21837127      PMCID: PMC3151866          DOI: 10.1107/S1600536811020587

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of hy­droxy­phospho­nate derivatives, see: Peng et al. (2007 ▶); Liu et al. (2006 ▶). For the synthesis of hy­droxy­phospho­nates, see: Zhou et al. (2008 ▶). For standard bond lengths, see: (Allen et al., 1987 ▶).

Experimental

Crystal data

C13H18BrO4P M = 349.15 Orthorhombic, a = 11.0662 (17) Å b = 11.3149 (18) Å c = 11.9609 (19) Å V = 1497.7 (4) Å3 Z = 4 Mo Kα radiation μ = 2.86 mm−1 T = 298 K 0.20 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 10072 measured reflections 3627 independent reflections 2691 reflections with I > 2σ(I) R int = 0.114

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.105 S = 0.93 3627 reflections 176 parameters H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.45 e Å−3 Absolute structure: Flack (1983 ▶), with 1517 Friedel pairs Flack parameter: −0.011 (10) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON and SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811020587/qk2003sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020587/qk2003Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811020587/qk2003Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18BrO4PF(000) = 712
Mr = 349.15Dx = 1.549 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3882 reflections
a = 11.0662 (17) Åθ = 2.5–26.7°
b = 11.3149 (18) ŵ = 2.86 mm1
c = 11.9609 (19) ÅT = 298 K
V = 1497.7 (4) Å3Block, colourless
Z = 40.20 × 0.12 × 0.10 mm
Bruker SMART APEX CCD area-detector diffractometer2691 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.114
graphiteθmax = 28.3°, θmin = 2.5°
φ and ω scansh = −14→14
10072 measured reflectionsk = −14→14
3627 independent reflectionsl = −15→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.105w = 1/[σ2(Fo2) + (0.0423P)2] where P = (Fo2 + 2Fc2)/3
S = 0.93(Δ/σ)max = 0.001
3627 reflectionsΔρmax = 0.46 e Å3
176 parametersΔρmin = −0.45 e Å3
0 restraintsAbsolute structure: Flack (1983), with 1517 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.011 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.07457 (4)0.16872 (4)0.69930 (5)0.0869 (2)
C10.0650 (3)0.2689 (3)0.7001 (3)0.0535 (8)
C20.0982 (3)0.3216 (3)0.7973 (3)0.0533 (8)
H20.05200.31130.86150.064*
C30.2007 (3)0.3905 (3)0.8000 (3)0.0429 (7)
H30.22440.42500.86710.052*
C40.2690 (2)0.4094 (2)0.7050 (3)0.0373 (6)
C50.2317 (3)0.3561 (3)0.6058 (3)0.0498 (8)
H50.27620.36790.54080.060*
C60.1288 (3)0.2857 (3)0.6026 (3)0.0542 (9)
H60.10370.25070.53620.065*
C70.3824 (3)0.4854 (2)0.7128 (3)0.0364 (6)
C80.4129 (4)0.5472 (3)0.6033 (3)0.0557 (9)
H8A0.34640.59650.58130.084*
H8B0.42770.48920.54640.084*
H8C0.48380.59490.61330.084*
C90.5250 (3)0.4228 (4)0.9724 (3)0.0608 (10)
H9A0.51860.37691.04060.073*
H9B0.47120.49020.97910.073*
C100.6530 (3)0.4663 (4)0.9596 (3)0.0598 (10)
C110.6616 (3)0.5380 (3)0.8524 (3)0.0544 (9)
H11A0.61130.60790.85920.065*
H11B0.74440.56380.84190.065*
C120.6801 (5)0.5486 (6)1.0566 (4)0.1081 (19)
H12A0.62970.61741.05140.162*
H12B0.76350.57201.05400.162*
H12C0.66440.50851.12580.162*
C130.7422 (4)0.3633 (4)0.9547 (5)0.0885 (15)
H13A0.72810.31121.01670.133*
H13B0.82330.39320.95850.133*
H13C0.73140.32080.88600.133*
O10.36447 (19)0.56809 (16)0.80211 (19)0.0426 (5)
H10.39950.63010.78740.064*
O20.5245 (2)0.28766 (19)0.6800 (2)0.0596 (6)
O30.48668 (19)0.34977 (18)0.8773 (2)0.0497 (5)
O40.6236 (2)0.4709 (2)0.7554 (2)0.0520 (6)
P10.50921 (6)0.38934 (6)0.75398 (7)0.03831 (18)
U11U22U33U12U13U23
Br10.0855 (3)0.0813 (3)0.0938 (3)−0.0491 (2)−0.0168 (3)0.0076 (2)
C10.0510 (16)0.0373 (14)0.072 (2)−0.0124 (14)−0.013 (2)0.0034 (18)
C20.0555 (18)0.0470 (16)0.057 (2)−0.0092 (15)0.0010 (18)0.0093 (18)
C30.0469 (15)0.0378 (14)0.0441 (16)−0.0061 (13)−0.0027 (15)−0.0018 (16)
C40.0366 (13)0.0287 (12)0.0464 (16)0.0067 (11)−0.0042 (14)−0.0006 (13)
C50.0528 (17)0.0502 (19)0.0464 (18)0.0022 (17)−0.0007 (15)−0.0032 (16)
C60.0547 (18)0.0492 (18)0.059 (2)−0.0037 (18)−0.0127 (18)−0.0109 (17)
C70.0373 (13)0.0317 (12)0.0400 (15)0.0021 (11)−0.0015 (13)−0.0030 (12)
C80.064 (2)0.0477 (17)0.055 (2)−0.0051 (19)0.0061 (18)0.0061 (16)
C90.0599 (19)0.077 (2)0.0454 (19)0.006 (2)−0.0014 (17)0.0083 (18)
C100.0461 (17)0.067 (2)0.067 (2)0.0070 (18)−0.0158 (18)−0.002 (2)
C110.0437 (16)0.0476 (19)0.072 (2)−0.0055 (15)−0.0129 (17)−0.0052 (18)
C120.104 (4)0.146 (5)0.074 (3)−0.010 (4)−0.031 (3)−0.029 (4)
C130.063 (2)0.079 (3)0.124 (4)0.015 (2)−0.022 (3)0.020 (3)
O10.0476 (11)0.0263 (9)0.0540 (13)−0.0040 (8)0.0070 (11)−0.0088 (10)
O20.0618 (13)0.0404 (11)0.0768 (17)0.0148 (12)−0.0035 (13)−0.0178 (11)
O30.0441 (10)0.0430 (11)0.0619 (13)−0.0006 (11)−0.0005 (11)0.0105 (10)
O40.0416 (10)0.0596 (13)0.0548 (13)−0.0138 (11)0.0053 (11)−0.0026 (12)
P10.0339 (3)0.0299 (3)0.0511 (4)0.0027 (3)0.0014 (3)−0.0047 (3)
Br1—C11.915 (3)C9—C101.508 (5)
C1—C21.357 (5)C9—H9A0.9700
C1—C61.377 (5)C9—H9B0.9700
C2—C31.377 (4)C10—C121.518 (7)
C2—H20.9300C10—C111.520 (5)
C3—C41.382 (5)C10—C131.528 (5)
C3—H30.9300C11—O41.449 (4)
C4—C51.393 (5)C11—H11A0.9700
C4—C71.524 (4)C11—H11B0.9700
C5—C61.391 (5)C12—H12A0.9600
C5—H50.9300C12—H12B0.9600
C6—H60.9300C12—H12C0.9600
C7—O11.434 (4)C13—H13A0.9600
C7—C81.522 (5)C13—H13B0.9600
C7—P11.842 (3)C13—H13C0.9600
C8—H8A0.9600O1—H10.8200
C8—H8B0.9600O2—P11.461 (2)
C8—H8C0.9600O3—P11.562 (2)
C9—O31.469 (4)O4—P11.566 (2)
C2—C1—C6121.7 (3)H9A—C9—H9B107.9
C2—C1—Br1118.9 (3)C9—C10—C12107.9 (4)
C6—C1—Br1119.4 (3)C9—C10—C11108.6 (3)
C1—C2—C3119.5 (3)C12—C10—C11107.8 (4)
C1—C2—H2120.3C9—C10—C13111.3 (3)
C3—C2—H2120.3C12—C10—C13111.7 (4)
C2—C3—C4121.3 (3)C11—C10—C13109.6 (3)
C2—C3—H3119.4O4—C11—C10112.2 (3)
C4—C3—H3119.4O4—C11—H11A109.2
C3—C4—C5118.1 (3)C10—C11—H11A109.2
C3—C4—C7119.2 (3)O4—C11—H11B109.2
C5—C4—C7122.7 (3)C10—C11—H11B109.2
C6—C5—C4120.9 (3)H11A—C11—H11B107.9
C6—C5—H5119.5C10—C12—H12A109.5
C4—C5—H5119.5C10—C12—H12B109.5
C1—C6—C5118.4 (3)H12A—C12—H12B109.5
C1—C6—H6120.8C10—C12—H12C109.5
C5—C6—H6120.8H12A—C12—H12C109.5
O1—C7—C8111.8 (2)H12B—C12—H12C109.5
O1—C7—C4107.5 (2)C10—C13—H13A109.5
C8—C7—C4112.9 (3)C10—C13—H13B109.5
O1—C7—P1106.92 (19)H13A—C13—H13B109.5
C8—C7—P1109.4 (2)C10—C13—H13C109.5
C4—C7—P1108.11 (18)H13A—C13—H13C109.5
C7—C8—H8A109.5H13B—C13—H13C109.5
C7—C8—H8B109.5C7—O1—H1109.5
H8A—C8—H8B109.5C9—O3—P1121.6 (2)
C7—C8—H8C109.5C11—O4—P1123.5 (2)
H8A—C8—H8C109.5O2—P1—O3111.41 (14)
H8B—C8—H8C109.5O2—P1—O4112.12 (14)
O3—C9—C10112.1 (3)O3—P1—O4106.72 (12)
O3—C9—H9A109.2O2—P1—C7112.97 (13)
C10—C9—H9A109.2O3—P1—C7107.47 (13)
O3—C9—H9B109.2O4—P1—C7105.74 (13)
C10—C9—H9B109.2
C6—C1—C2—C3−2.4 (5)C12—C10—C11—O4−173.3 (4)
Br1—C1—C2—C3177.7 (2)C13—C10—C11—O465.0 (4)
C1—C2—C3—C41.6 (5)C10—C9—O3—P1−47.2 (4)
C2—C3—C4—C5−0.3 (4)C10—C11—O4—P143.1 (4)
C2—C3—C4—C7−179.4 (3)C9—O3—P1—O2150.2 (2)
C3—C4—C5—C6−0.2 (4)C9—O3—P1—O427.5 (3)
C7—C4—C5—C6178.8 (3)C9—O3—P1—C7−85.6 (2)
C2—C1—C6—C51.8 (5)C11—O4—P1—O2−148.2 (2)
Br1—C1—C6—C5−178.3 (2)C11—O4—P1—O3−25.9 (3)
C4—C5—C6—C1−0.5 (5)C11—O4—P1—C788.3 (3)
C3—C4—C7—O1−28.2 (3)O1—C7—P1—O2169.99 (19)
C5—C4—C7—O1152.7 (3)C8—C7—P1—O2−68.8 (2)
C3—C4—C7—C8−152.0 (3)C4—C7—P1—O254.6 (2)
C5—C4—C7—C829.0 (4)O1—C7—P1—O346.7 (2)
C3—C4—C7—P186.8 (3)C8—C7—P1—O3167.9 (2)
C5—C4—C7—P1−92.2 (3)C4—C7—P1—O3−68.8 (2)
O3—C9—C10—C12175.4 (4)O1—C7—P1—O4−67.0 (2)
O3—C9—C10—C1158.9 (4)C8—C7—P1—O454.2 (2)
O3—C9—C10—C13−61.8 (4)C4—C7—P1—O4177.5 (2)
C9—C10—C11—O4−56.7 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.822.012.780 (3)156.
C9—H9B···O10.972.583.163 (4)119.
C11—H11A···O2i0.972.573.517 (4)165.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.822.012.780 (3)156
C9—H9B⋯O10.972.583.163 (4)119
C11—H11A⋯O2i0.972.573.517 (4)165

Symmetry code: (i) .

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