Literature DB >> 21837095

(Z)-6-Hy-droxy-1a,5-dimethyl-8-[(morpholin-4-yl)meth-yl]-2,3,6,7,7a,8,10a,10b-octa-hydro-oxireno[2',3':9,10]cyclo-deca-[1,2-b]furan-9(1aH)-one.

Mohamed Moumou, Ahmed Benharref, Moha Berraho, Lahcen El Ammari, Mohamed Akssira, Ahmed Elhakmaoui.   

Abstract

The title compound, C(19)H(29)NO(5), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methylen-3,14-dioxatricyclo-[9.3.0.0(2),(4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule is built up from two fused five- and ten-membered rings with the (morpholin-4-yl)methyl group as a substituent. The five-membered lactone ring has an envelope conformation, whereas the ten-membered and the morpholine rings display approximate chair-chair and chair conformations, respectively. The dihedral angle between the ten-membered ring and the lactone ring is 27.93 (6)°. The crystal structure is stabilized by weak inter-molecular C-H⋯O hydrogen-bond inter-actions. An intra-molecular O-H⋯N hydrogen bond also occurs.

Entities:  

Year:  2011        PMID: 21837095      PMCID: PMC3151749          DOI: 10.1107/S1600536811022616

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: Abdel Sattar et al. (1996 ▶); Bellakhdar (1997 ▶); El Hassany et al. (2004 ▶); Qureshi et al. (1990 ▶). For the reactivity of this sesquiterpene see: Der-Ren et al. (2006 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C19H29NO5 M = 351.43 Monoclinic, a = 11.7539 (3) Å b = 6.8304 (2) Å c = 11.8585 (3) Å β = 101.328 (2)° V = 933.50 (4) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.45 × 0.33 × 0.12 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 11514 measured reflections 2086 independent reflections 1987 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.095 S = 1.07 2086 reflections 229 parameters 1 restraint H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.13 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2 and SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811022616/zl2378sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022616/zl2378Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H29NO5F(000) = 380
Mr = 351.43Dx = 1.250 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 11515 reflections
a = 11.7539 (3) Åθ = 1.8–26.4°
b = 6.8304 (2) ŵ = 0.09 mm1
c = 11.8585 (3) ÅT = 298 K
β = 101.328 (2)°Prism, colourless
V = 933.50 (4) Å30.45 × 0.33 × 0.12 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer1987 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.022
graphiteθmax = 26.4°, θmin = 1.8°
φ and ω scansh = −14→14
11514 measured reflectionsk = −7→8
2086 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.064P)2 + 0.0786P] where P = (Fo2 + 2Fc2)/3
2086 reflections(Δ/σ)max < 0.001
229 parametersΔρmax = 0.17 e Å3
1 restraintΔρmin = −0.13 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
C40.68147 (17)0.6737 (3)0.7681 (2)0.0506 (5)
H40.75140.69840.81810.061*
C10.59711 (14)0.3364 (3)0.86650 (18)0.0446 (4)
C20.56720 (18)0.5347 (4)0.9071 (2)0.0602 (6)
H2A0.62040.56650.97820.072*
H2B0.48940.53110.92320.072*
C30.5735 (2)0.6950 (4)0.8181 (3)0.0662 (7)
H3A0.50560.68720.75690.079*
H3B0.57360.82240.85430.079*
C50.68894 (16)0.6245 (3)0.66217 (19)0.0490 (5)
C60.80378 (17)0.5685 (3)0.63035 (17)0.0456 (5)
H60.79740.59630.54830.055*
C70.82776 (15)0.3483 (3)0.64773 (14)0.0379 (4)
H7A0.88590.31100.60390.045*
H7B0.75720.27750.61600.045*
C80.86965 (12)0.2824 (3)0.77319 (13)0.0298 (3)
H80.88790.40000.82060.036*
C110.97917 (13)0.1537 (3)0.79115 (13)0.0339 (4)
H110.98160.08170.72020.041*
C120.96289 (15)0.0110 (3)0.88422 (15)0.0392 (4)
C90.78383 (13)0.1581 (3)0.82571 (13)0.0320 (3)
H90.72950.08920.76540.038*
C100.71981 (13)0.2807 (3)0.89708 (14)0.0367 (4)
H100.76860.37850.94410.044*
C140.5874 (2)0.6021 (6)0.5617 (2)0.0801 (9)
H14A0.51620.62560.58760.120*
H14B0.58700.47180.53130.120*
H14C0.59500.69490.50280.120*
C130.51592 (17)0.2541 (4)0.7628 (2)0.0627 (6)
H13A0.54540.13100.74200.094*
H13B0.51010.34400.69970.094*
H13C0.44050.23490.78080.094*
C151.09185 (13)0.2656 (3)0.82863 (14)0.0408 (4)
H15A1.09220.32510.90300.049*
H15B1.15620.17420.83780.049*
C161.14927 (17)0.3355 (3)0.64750 (16)0.0451 (4)
H16A1.09090.24670.60690.054*
H16B1.22010.26170.67340.054*
C171.1711 (2)0.4972 (4)0.5678 (2)0.0615 (6)
H17A1.19660.44050.50190.074*
H17B1.09920.56690.53980.074*
C191.19698 (17)0.5597 (4)0.80346 (19)0.0526 (5)
H19A1.26860.49100.83390.063*
H19B1.17010.62100.86720.063*
C181.2193 (2)0.7138 (4)0.7208 (3)0.0680 (7)
H18A1.14900.78930.69530.082*
H18B1.27880.80220.75970.082*
N1.10962 (11)0.4195 (3)0.74672 (12)0.0387 (4)
O11.03350 (12)−0.0969 (3)0.93835 (13)0.0577 (4)
O20.63581 (11)0.1901 (3)0.95455 (13)0.0552 (4)
O30.85411 (10)0.0191 (2)0.90318 (10)0.0397 (3)
O40.89640 (12)0.6831 (3)0.69114 (15)0.0587 (4)
H4A0.95640.61870.70180.088*
O51.25568 (15)0.6306 (3)0.62272 (16)0.0699 (5)
U11U22U33U12U13U23
C40.0425 (9)0.0284 (10)0.0798 (14)0.0016 (9)0.0099 (9)−0.0007 (10)
C10.0267 (8)0.0497 (12)0.0590 (11)0.0022 (8)0.0121 (7)0.0057 (9)
C20.0395 (10)0.0673 (16)0.0785 (14)0.0138 (11)0.0234 (9)−0.0065 (13)
C30.0552 (12)0.0443 (13)0.1029 (19)0.0162 (12)0.0243 (12)−0.0044 (14)
C50.0392 (9)0.0365 (11)0.0678 (12)0.0053 (8)0.0020 (8)0.0146 (9)
C60.0446 (9)0.0423 (11)0.0482 (9)0.0010 (9)0.0048 (7)0.0152 (9)
C70.0378 (8)0.0413 (10)0.0334 (8)0.0048 (8)0.0042 (6)0.0035 (7)
C80.0267 (7)0.0312 (8)0.0314 (7)0.0029 (7)0.0055 (5)0.0007 (6)
C110.0291 (7)0.0397 (10)0.0333 (7)0.0077 (7)0.0071 (6)0.0021 (7)
C120.0360 (8)0.0408 (10)0.0408 (8)0.0094 (8)0.0072 (6)0.0056 (8)
C90.0277 (7)0.0306 (9)0.0363 (7)0.0006 (7)0.0029 (6)0.0040 (7)
C100.0268 (7)0.0444 (10)0.0399 (8)0.0005 (7)0.0086 (6)0.0033 (8)
C140.0522 (12)0.100 (2)0.0787 (16)0.0113 (15)−0.0105 (11)0.0245 (18)
C130.0323 (9)0.0586 (15)0.0895 (16)−0.0032 (10)−0.0064 (9)0.0044 (13)
C150.0285 (7)0.0589 (12)0.0347 (8)0.0033 (8)0.0054 (6)0.0019 (8)
C160.0464 (9)0.0478 (11)0.0451 (9)−0.0003 (9)0.0186 (7)−0.0042 (9)
C170.0723 (14)0.0625 (16)0.0556 (11)−0.0063 (13)0.0270 (10)0.0036 (12)
C190.0363 (9)0.0637 (15)0.0590 (11)−0.0096 (10)0.0120 (8)−0.0182 (11)
C180.0537 (11)0.0563 (15)0.0977 (17)−0.0141 (12)0.0234 (12)−0.0159 (14)
N0.0299 (6)0.0480 (9)0.0392 (7)0.0003 (7)0.0093 (5)−0.0058 (7)
O10.0481 (7)0.0642 (11)0.0607 (8)0.0229 (8)0.0098 (6)0.0236 (8)
O20.0364 (6)0.0698 (11)0.0645 (8)0.0062 (8)0.0226 (6)0.0214 (8)
O30.0344 (6)0.0383 (7)0.0469 (6)0.0060 (6)0.0096 (5)0.0122 (6)
O40.0453 (7)0.0417 (8)0.0877 (10)−0.0077 (7)0.0099 (7)0.0103 (8)
O50.0682 (10)0.0662 (12)0.0845 (11)−0.0174 (10)0.0375 (9)0.0003 (10)
C4—C51.320 (3)C9—C101.495 (2)
C4—C31.509 (3)C9—H90.9800
C4—H40.9300C10—O21.444 (2)
C1—O21.452 (3)C10—H100.9800
C1—C101.466 (2)C14—H14A0.9600
C1—C21.503 (4)C14—H14B0.9600
C1—C131.509 (3)C14—H14C0.9600
C2—C31.533 (4)C13—H13A0.9600
C2—H2A0.9700C13—H13B0.9600
C2—H2B0.9700C13—H13C0.9600
C3—H3A0.9700C15—N1.473 (3)
C3—H3B0.9700C15—H15A0.9700
C5—C141.519 (3)C15—H15B0.9700
C5—C61.520 (3)C16—N1.465 (2)
C6—O41.418 (3)C16—C171.509 (3)
C6—C71.537 (3)C16—H16A0.9700
C6—H60.9800C16—H16B0.9700
C7—C81.540 (2)C17—O51.410 (3)
C7—H7A0.9700C17—H17A0.9700
C7—H7B0.9700C17—H17B0.9700
C8—C111.538 (2)C19—N1.467 (3)
C8—C91.540 (2)C19—C181.496 (4)
C8—H80.9800C19—H19A0.9700
C11—C121.513 (2)C19—H19B0.9700
C11—C151.518 (2)C18—O51.433 (3)
C11—H110.9800C18—H18A0.9700
C12—O11.198 (2)C18—H18B0.9700
C12—O31.342 (2)O4—H4A0.8200
C9—O31.459 (2)
C5—C4—C3128.1 (2)C8—C9—H9110.7
C5—C4—H4116.0O2—C10—C159.83 (12)
C3—C4—H4116.0O2—C10—C9119.60 (17)
O2—C1—C1059.33 (11)C1—C10—C9125.82 (16)
O2—C1—C2116.72 (19)O2—C10—H10113.6
C10—C1—C2115.79 (19)C1—C10—H10113.6
O2—C1—C13112.9 (2)C9—C10—H10113.6
C10—C1—C13122.61 (19)C5—C14—H14A109.5
C2—C1—C13116.52 (19)C5—C14—H14B109.5
C1—C2—C3112.15 (19)H14A—C14—H14B109.5
C1—C2—H2A109.2C5—C14—H14C109.5
C3—C2—H2A109.2H14A—C14—H14C109.5
C1—C2—H2B109.2H14B—C14—H14C109.5
C3—C2—H2B109.2C1—C13—H13A109.5
H2A—C2—H2B107.9C1—C13—H13B109.5
C4—C3—C2111.12 (19)H13A—C13—H13B109.5
C4—C3—H3A109.4C1—C13—H13C109.5
C2—C3—H3A109.4H13A—C13—H13C109.5
C4—C3—H3B109.4H13B—C13—H13C109.5
C2—C3—H3B109.4N—C15—C11113.24 (13)
H3A—C3—H3B108.0N—C15—H15A108.9
C4—C5—C14125.7 (2)C11—C15—H15A108.9
C4—C5—C6121.92 (18)N—C15—H15B108.9
C14—C5—C6112.3 (2)C11—C15—H15B108.9
O4—C6—C5111.44 (19)H15A—C15—H15B107.7
O4—C6—C7111.71 (16)N—C16—C17109.68 (19)
C5—C6—C7111.18 (17)N—C16—H16A109.7
O4—C6—H6107.4C17—C16—H16A109.7
C5—C6—H6107.4N—C16—H16B109.7
C7—C6—H6107.4C17—C16—H16B109.7
C6—C7—C8115.55 (16)H16A—C16—H16B108.2
C6—C7—H7A108.4O5—C17—C16112.00 (19)
C8—C7—H7A108.4O5—C17—H17A109.2
C6—C7—H7B108.4C16—C17—H17A109.2
C8—C7—H7B108.4O5—C17—H17B109.2
H7A—C7—H7B107.5C16—C17—H17B109.2
C11—C8—C7113.64 (13)H17A—C17—H17B107.9
C11—C8—C9103.05 (13)N—C19—C18110.83 (18)
C7—C8—C9116.19 (13)N—C19—H19A109.5
C11—C8—H8107.9C18—C19—H19A109.5
C7—C8—H8107.9N—C19—H19B109.5
C9—C8—H8107.9C18—C19—H19B109.5
C12—C11—C15109.82 (13)H19A—C19—H19B108.1
C12—C11—C8104.29 (12)O5—C18—C19111.8 (2)
C15—C11—C8114.26 (16)O5—C18—H18A109.3
C12—C11—H11109.4C19—C18—H18A109.3
C15—C11—H11109.4O5—C18—H18B109.3
C8—C11—H11109.4C19—C18—H18B109.3
O1—C12—O3121.22 (17)H18A—C18—H18B107.9
O1—C12—C11127.88 (16)C16—N—C19108.64 (14)
O3—C12—C11110.89 (14)C16—N—C15111.03 (17)
O3—C9—C10107.07 (13)C19—N—C15109.89 (14)
O3—C9—C8106.16 (11)C10—O2—C160.83 (11)
C10—C9—C8111.28 (15)C12—O3—C9111.20 (13)
O3—C9—H9110.7C6—O4—H4A109.5
C10—C9—H9110.7C17—O5—C18109.61 (17)
D—H···AD—HH···AD···AD—H···A
O4—H4A···N0.822.243.051 (2)172
C2—H2B···O2i0.972.513.324 (3)142
C10—H10···O1ii0.982.473.270 (2)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4A⋯N0.822.243.051 (2)172
C2—H2B⋯O2i0.972.513.324 (3)142
C10—H10⋯O1ii0.982.473.270 (2)138

Symmetry codes: (i) ; (ii) .

  6 in total

1.  Antitumor germacranolides from Anvillea garcinii.

Authors:  E Abdel Sattar; A M Galal; G S Mossa
Journal:  J Nat Prod       Date:  1996-04       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

4.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

5.  Preliminary toxicity studies on ethanol extracts of the aerial parts of Artemisia abyssinica and A. Inculta in mice.

Authors:  S Qureshi; A M Ageel; M A al-Yahya; M Tariq; J S Mossa; A H Shah
Journal:  J Ethnopharmacol       Date:  1990-02       Impact factor: 4.360

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  Comparison of the effects of alcoholic extract of aerial parts of Anvillea garcinii and atorvastatin on the lipid profile and thyroid hormones in hypercholesterolemic rats.

Authors:  Fatemeh Rasekh; Zohre Atashi-Nodoshan; Ali Zarei; Amir Abbas Minaeifar; Saeed Changizi-Ashtiyani; Zahra Afrasyabi
Journal:  Avicenna J Phytomed       Date:  2022 Mar-Apr
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.