Literature DB >> 21837091

Oxonium picrate.

Shou-Wen Jin1, Bing-Xia Chen, Yu-Shuang Ge, Hua-Bing Yin, Yu-Ping Fang.   

Abstract

The title compound, H(3)O(+)·C(6)H(2)N(3)O(7) (-), consists of one picrate anion and one oxonium cation. The oxonium cation is located on a crystallographic twofold axis and both its H atoms are disordered, each over two symmetry-equivalent positions with occupancy ratios of 0.75. The picrate anions are also located on twofold axes bis-ecting the phenolate and p-nitro groups. π-π inter-actions between the rings of the picrates [centroid-to-centroid distances of 3.324 (2) Å] connect the anions to form stacks along the a-axis direction. The stacks are further joined together by the protonated water mol-ecules through hydrogen bonds to form two-dimensional sheets extending parallel to the ab plane. The sheets are stacked on top of each other along the c-axis direction and connected through C-H⋯O inter-actions between the CH groups of the benzene rings and the picrate nitro groups, with C⋯O distances of 3.450 (2) Å.

Entities:  

Year:  2011        PMID: 21837091      PMCID: PMC3151795          DOI: 10.1107/S1600536811022574

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to organic salts of picric acid, see Jin et al. (2010 ▶); Harrison et al. (2007 ▶); Muthamizhchelvan et al. (2005 ▶); Smith et al. (2004 ▶).

Experimental

Crystal data

H3OC6H2N3O7 − M = 247.13 Orthorhombic, a = 7.1510 (6) Å b = 19.80820 (18) Å c = 13.50610 (12) Å V = 1913.12 (16) Å3 Z = 8 Mo Kα radiation μ = 0.16 mm−1 T = 298 K 0.45 × 0.34 × 0.31 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.936, T max = 0.951 3842 measured reflections 848 independent reflections 654 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.140 S = 1.12 848 reflections 89 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.41 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811022574/zl2375sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022574/zl2375Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811022574/zl2375Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
H3O+·C6H2N3O7Dx = 1.716 Mg m3
Mr = 247.13Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, IbcaCell parameters from 1867 reflections
a = 7.1510 (6) Åθ = 1.5–25.0°
b = 19.80820 (18) ŵ = 0.16 mm1
c = 13.50610 (12) ÅT = 298 K
V = 1913.12 (16) Å3Block, yellow
Z = 80.45 × 0.34 × 0.31 mm
F(000) = 1008
Bruker SMART CCD area-detector diffractometer848 independent reflections
Radiation source: fine-focus sealed tube654 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −8→8
Tmin = 0.936, Tmax = 0.951k = −22→23
3842 measured reflectionsl = −16→6
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.140w = 1/[σ2(Fo2) + (0.0677P)2 + 3.1011P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
848 reflectionsΔρmax = 0.21 e Å3
89 parametersΔρmin = −0.41 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.039 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.3838 (3)0.11353 (11)0.17214 (16)0.0328 (7)
N20.2500−0.09568 (15)0.00000.0361 (8)
O10.25000.18513 (12)0.00000.0369 (8)
O20.3327 (3)0.17048 (10)0.19325 (15)0.0502 (7)
O30.4947 (3)0.08131 (11)0.22328 (15)0.0497 (7)
O40.3100 (4)−0.12491 (10)0.07276 (19)0.0630 (8)
O50.00000.25000.1338 (2)0.0489 (9)
H5A0.089 (6)0.233 (3)0.091 (3)0.073*0.75
H5B0.052 (7)0.279 (2)0.177 (3)0.073*0.75
C10.25000.12179 (17)0.00000.0270 (8)
C20.3107 (4)0.08102 (13)0.08289 (17)0.0270 (7)
C30.3134 (4)0.01147 (13)0.08305 (17)0.0286 (7)
H30.3569−0.01220.13780.034*
C40.2500−0.02233 (17)0.00000.0282 (8)
U11U22U33U12U13U23
N10.0376 (14)0.0358 (13)0.0250 (12)−0.0067 (10)−0.0014 (10)0.0001 (9)
N20.0350 (19)0.0269 (16)0.046 (2)0.0000.0059 (15)0.000
O10.0587 (19)0.0226 (13)0.0295 (14)0.0000.0085 (13)0.000
O20.0748 (17)0.0372 (12)0.0387 (12)0.0047 (10)−0.0128 (11)−0.0126 (9)
O30.0569 (15)0.0538 (13)0.0385 (12)0.0006 (11)−0.0193 (10)0.0019 (9)
O40.096 (2)0.0300 (12)0.0629 (15)0.0117 (11)−0.0140 (14)0.0089 (10)
O50.061 (2)0.0414 (17)0.0443 (18)−0.0008 (15)0.0000.000
C10.0273 (19)0.0275 (18)0.0260 (18)0.0000.0050 (14)0.000
C20.0287 (14)0.0305 (14)0.0217 (13)−0.0032 (10)0.0009 (10)−0.0014 (9)
C30.0279 (14)0.0303 (14)0.0275 (13)0.0010 (11)−0.0001 (11)0.0051 (10)
C40.0262 (19)0.0248 (17)0.0337 (19)0.0000.0041 (15)0.000
N1—O21.220 (3)O5—H5B0.91 (2)
N1—O31.230 (3)C1—C21.447 (3)
N1—C21.463 (3)C1—C2i1.447 (3)
N2—O41.219 (3)C2—C31.378 (4)
N2—O4i1.219 (3)C3—C41.383 (3)
N2—C41.453 (5)C3—H30.9300
O1—C11.255 (4)C4—C3i1.383 (3)
O5—H5A0.92 (2)
O2—N1—O3122.8 (2)C3—C2—C1124.3 (2)
O2—N1—C2119.5 (2)C3—C2—N1115.7 (2)
O3—N1—C2117.7 (2)C1—C2—N1119.9 (2)
O4—N2—O4i123.3 (3)C2—C3—C4118.6 (2)
O4—N2—C4118.37 (17)C2—C3—H3120.7
O4i—N2—C4118.37 (17)C4—C3—H3120.7
H5A—O5—H5B111 (5)C3i—C4—C3122.1 (3)
O1—C1—C2123.92 (15)C3i—C4—N2118.97 (16)
O1—C1—C2i123.92 (15)C3—C4—N2118.97 (16)
C2—C1—C2i112.2 (3)
O1—C1—C2—C3−179.13 (18)C1—C2—C3—C4−1.7 (3)
C2i—C1—C2—C30.87 (18)N1—C2—C3—C4−178.59 (19)
O1—C1—C2—N1−2.4 (3)C2—C3—C4—C3i0.81 (17)
C2i—C1—C2—N1177.6 (3)C2—C3—C4—N2−179.19 (17)
O2—N1—C2—C3−155.8 (3)O4—N2—C4—C3i178.42 (19)
O3—N1—C2—C323.8 (3)O4i—N2—C4—C3i−1.58 (19)
O2—N1—C2—C127.2 (3)O4—N2—C4—C3−1.58 (19)
O3—N1—C2—C1−153.3 (2)O4i—N2—C4—C3178.42 (19)
D—H···AD—HH···AD···AD—H···A
O5—H5B···O2ii0.91 (2)2.17 (2)3.061 (3)166 (5)
O5—H5A···O10.92 (2)1.93 (2)2.848 (2)172 (5)
C3—H3···O3iii0.932.523.450 (2)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5B⋯O2i0.91 (2)2.17 (2)3.061 (3)166 (5)
O5—H5A⋯O10.92 (2)1.93 (2)2.848 (2)172 (5)
C3—H3⋯O3ii0.932.523.450 (2)175

Symmetry codes: (i) ; (ii) .

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