Literature DB >> 21837085

Diethyl 2-{[3-(2-meth-oxy-benz-yl)thio-phen-2-yl]methyl-idene}malonate.

S Ranjith, K Sakthi Murugesan, A Subbiah Pandi, V Dhayalan, A K Mohana Krishnan.   

Abstract

In the title compound, C(20)H(22)O(5)S, the dihedral angle between the mean planes through the thio-phene and benzene rings is 75.2 (1)°. The meth-oxy group is essentially coplanar with the benzene ring, the largest deviation from the mean plane being 0.019 (2) Å for the O atom. The malonate group assumes an extended conformation.

Entities:  

Year:  2011        PMID: 21837085      PMCID: PMC3151827          DOI: 10.1107/S1600536811022525

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of thio­phene derivatives, see: Bonini et al. (2005 ▶); Brault et al. (2005 ▶); Isloora et al. (2010 ▶); Xia et al. (2010 ▶). For a similar thio­phene structure, see: Dufresne & Skene (2010 ▶).

Experimental

Crystal data

C20H22O5S M = 374.44 Orthorhombic, a = 8.1680 (2) Å b = 16.4046 (4) Å c = 28.8651 (7) Å V = 3867.72 (16) Å3 Z = 8 Mo Kα radiation μ = 0.19 mm−1 T = 293 K 0.25 × 0.22 × 0.19 mm

Data collection

Bruker APEXII CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.953, T max = 0.964 35690 measured reflections 3695 independent reflections 2687 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.145 S = 1.02 3695 reflections 238 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811022525/nk2101sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022525/nk2101Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811022525/nk2101Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22O5SF(000) = 1584
Mr = 374.44Dx = 1.286 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3696 reflections
a = 8.1680 (2) Åθ = 1.4–25.8°
b = 16.4046 (4) ŵ = 0.19 mm1
c = 28.8651 (7) ÅT = 293 K
V = 3867.72 (16) Å3Block, white
Z = 80.25 × 0.22 × 0.19 mm
Bruker APEXII CCD area detector diffractometer3695 independent reflections
Radiation source: fine-focus sealed tube2687 reflections with I > 2σ(I)
graphiteRint = 0.053
ω and φ scansθmax = 25.8°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.953, Tmax = 0.964k = −20→19
35690 measured reflectionsl = −35→35
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0896P)2 + 0.4403P] where P = (Fo2 + 2Fc2)/3
3695 reflections(Δ/σ)max = 0.001
238 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2480 (3)0.84683 (13)0.40960 (7)0.0502 (5)
H10.28530.79550.41820.060*
C20.0917 (3)0.87086 (14)0.41448 (8)0.0577 (6)
H20.00970.83820.42700.069*
C30.2653 (2)0.97752 (12)0.37999 (6)0.0406 (5)
C40.3501 (2)0.90728 (11)0.39004 (6)0.0391 (4)
C50.5308 (2)0.89232 (12)0.38274 (6)0.0416 (5)
H5A0.54550.84200.36560.050*
H5B0.57640.93630.36440.050*
C60.6220 (2)0.88675 (12)0.42814 (6)0.0392 (4)
C70.6554 (3)0.81224 (12)0.44834 (7)0.0499 (5)
H70.62460.76460.43320.060*
C80.7338 (3)0.80722 (15)0.49063 (8)0.0605 (6)
H80.75510.75660.50390.073*
C90.7800 (3)0.87723 (15)0.51296 (7)0.0600 (6)
H90.83330.87390.54140.072*
C100.7487 (3)0.95238 (14)0.49386 (7)0.0541 (6)
H100.77990.99960.50940.065*
C110.6703 (2)0.95747 (11)0.45135 (7)0.0415 (5)
C120.6731 (3)1.10362 (14)0.45138 (9)0.0702 (7)
H12A0.61901.10580.48090.105*
H12B0.63641.14810.43250.105*
H12C0.78931.10760.45590.105*
C130.3340 (2)1.05129 (11)0.36133 (6)0.0410 (5)
H130.44771.05190.35980.049*
C140.2619 (2)1.11897 (12)0.34583 (6)0.0418 (5)
C150.0810 (2)1.13214 (12)0.34553 (7)0.0467 (5)
C16−0.1688 (3)1.09125 (18)0.31161 (12)0.0825 (9)
H16A−0.20771.14410.30130.099*
H16B−0.21171.08110.34240.099*
C17−0.2233 (4)1.0273 (3)0.27952 (11)0.1122 (13)
H17A−0.17221.03510.24990.168*
H17B−0.34011.03000.27610.168*
H17C−0.19330.97480.29160.168*
C180.3658 (3)1.18679 (13)0.32912 (8)0.0541 (6)
C190.3623 (4)1.31693 (16)0.29168 (9)0.0758 (8)
H19A0.29471.36490.29630.091*
H19B0.46351.32440.30880.091*
C200.3981 (4)1.3071 (2)0.24258 (10)0.0962 (10)
H20A0.46991.26140.23830.144*
H20B0.45001.35560.23110.144*
H20C0.29801.29800.22590.144*
O10.63527 (19)1.02826 (8)0.42901 (5)0.0542 (4)
O20.0111 (2)1.17398 (10)0.37271 (7)0.0752 (5)
O30.00937 (18)1.08978 (10)0.31226 (5)0.0587 (4)
O40.5109 (2)1.18958 (11)0.33296 (8)0.0910 (7)
O50.2766 (2)1.24465 (9)0.30883 (5)0.0639 (5)
S10.06061 (7)0.96745 (4)0.39524 (2)0.0526 (2)
U11U22U33U12U13U23
C10.0581 (14)0.0429 (11)0.0496 (11)−0.0054 (10)−0.0043 (10)0.0073 (9)
C20.0579 (15)0.0586 (14)0.0565 (13)−0.0150 (12)0.0021 (11)0.0091 (11)
C30.0398 (11)0.0421 (11)0.0399 (10)0.0006 (8)−0.0028 (8)−0.0007 (8)
C40.0450 (12)0.0387 (10)0.0338 (9)−0.0009 (8)−0.0038 (8)−0.0015 (8)
C50.0489 (12)0.0380 (10)0.0378 (10)0.0053 (9)−0.0007 (9)−0.0010 (8)
C60.0382 (10)0.0396 (10)0.0397 (10)0.0030 (8)0.0012 (8)−0.0015 (8)
C70.0595 (14)0.0385 (11)0.0516 (12)0.0054 (10)−0.0067 (10)−0.0025 (9)
C80.0754 (16)0.0534 (14)0.0526 (13)0.0114 (12)−0.0090 (11)0.0089 (10)
C90.0710 (16)0.0669 (16)0.0422 (12)0.0082 (13)−0.0118 (11)0.0015 (11)
C100.0600 (14)0.0544 (14)0.0478 (12)−0.0047 (10)−0.0056 (11)−0.0106 (10)
C110.0420 (11)0.0369 (10)0.0457 (11)0.0004 (8)0.0015 (9)−0.0011 (8)
C120.0827 (18)0.0391 (12)0.0889 (18)−0.0098 (12)−0.0012 (14)−0.0097 (12)
C130.0364 (10)0.0416 (11)0.0450 (11)0.0006 (8)0.0001 (8)−0.0002 (8)
C140.0389 (11)0.0385 (10)0.0480 (11)0.0017 (8)0.0007 (9)−0.0007 (8)
C150.0447 (12)0.0361 (10)0.0592 (13)0.0028 (9)0.0043 (10)0.0044 (10)
C160.0380 (13)0.088 (2)0.121 (2)0.0024 (13)−0.0115 (14)0.0139 (18)
C170.070 (2)0.178 (4)0.088 (2)−0.035 (2)−0.0234 (17)0.002 (2)
C180.0474 (14)0.0444 (12)0.0706 (14)0.0025 (10)0.0056 (11)0.0067 (11)
C190.096 (2)0.0568 (15)0.0747 (17)−0.0089 (14)0.0089 (15)0.0113 (13)
C200.111 (3)0.101 (2)0.0764 (19)−0.0050 (19)0.0193 (17)0.0097 (17)
O10.0689 (10)0.0344 (7)0.0593 (9)−0.0046 (7)−0.0092 (7)−0.0008 (6)
O20.0597 (10)0.0637 (11)0.1023 (13)0.0107 (9)0.0193 (10)−0.0254 (10)
O30.0378 (8)0.0702 (10)0.0681 (10)0.0033 (7)−0.0059 (7)−0.0051 (8)
O40.0428 (10)0.0703 (12)0.160 (2)−0.0049 (9)0.0016 (11)0.0353 (12)
O50.0642 (10)0.0492 (9)0.0782 (11)−0.0018 (8)−0.0022 (8)0.0227 (8)
S10.0422 (3)0.0553 (4)0.0603 (4)−0.0012 (2)0.0033 (2)0.0067 (3)
C1—C21.344 (3)C12—H12B0.9600
C1—C41.413 (3)C12—H12C0.9600
C1—H10.9300C13—C141.334 (3)
C2—S11.698 (2)C13—H130.9300
C2—H20.9300C14—C181.480 (3)
C3—C41.375 (3)C14—C151.493 (3)
C3—C131.439 (3)C15—O21.189 (2)
C3—S11.737 (2)C15—O31.322 (3)
C4—C51.511 (3)C16—O31.456 (3)
C5—C61.510 (3)C16—C171.469 (4)
C5—H5A0.9700C16—H16A0.9700
C5—H5B0.9700C16—H16B0.9700
C6—C71.381 (3)C17—H17A0.9600
C6—C111.396 (3)C17—H17B0.9600
C7—C81.381 (3)C17—H17C0.9600
C7—H70.9300C18—O41.192 (3)
C8—C91.370 (3)C18—O51.332 (3)
C8—H80.9300C19—C201.456 (4)
C9—C101.375 (3)C19—O51.463 (3)
C9—H90.9300C19—H19A0.9700
C10—C111.387 (3)C19—H19B0.9700
C10—H100.9300C20—H20A0.9600
C11—O11.359 (2)C20—H20B0.9600
C12—O11.429 (3)C20—H20C0.9600
C12—H12A0.9600
C2—C1—C4113.4 (2)H12B—C12—H12C109.5
C2—C1—H1123.3C14—C13—C3130.83 (19)
C4—C1—H1123.3C14—C13—H13114.6
C1—C2—S1112.43 (17)C3—C13—H13114.6
C1—C2—H2123.8C13—C14—C18118.84 (18)
S1—C2—H2123.8C13—C14—C15123.97 (18)
C4—C3—C13125.96 (18)C18—C14—C15117.16 (17)
C4—C3—S1110.60 (15)O2—C15—O3124.75 (19)
C13—C3—S1123.39 (15)O2—C15—C14123.7 (2)
C3—C4—C1112.01 (18)O3—C15—C14111.48 (17)
C3—C4—C5126.77 (17)O3—C16—C17107.4 (2)
C1—C4—C5121.21 (18)O3—C16—H16A110.2
C6—C5—C4111.75 (15)C17—C16—H16A110.2
C6—C5—H5A109.3O3—C16—H16B110.2
C4—C5—H5A109.3C17—C16—H16B110.2
C6—C5—H5B109.3H16A—C16—H16B108.5
C4—C5—H5B109.3C16—C17—H17A109.5
H5A—C5—H5B107.9C16—C17—H17B109.5
C7—C6—C11118.48 (17)H17A—C17—H17B109.5
C7—C6—C5121.15 (17)C16—C17—H17C109.5
C11—C6—C5120.34 (17)H17A—C17—H17C109.5
C6—C7—C8121.2 (2)H17B—C17—H17C109.5
C6—C7—H7119.4O4—C18—O5123.9 (2)
C8—C7—H7119.4O4—C18—C14124.7 (2)
C9—C8—C7119.6 (2)O5—C18—C14111.45 (18)
C9—C8—H8120.2C20—C19—O5109.6 (2)
C7—C8—H8120.2C20—C19—H19A109.7
C8—C9—C10120.78 (19)O5—C19—H19A109.7
C8—C9—H9119.6C20—C19—H19B109.7
C10—C9—H9119.6O5—C19—H19B109.7
C9—C10—C11119.7 (2)H19A—C19—H19B108.2
C9—C10—H10120.2C19—C20—H20A109.5
C11—C10—H10120.2C19—C20—H20B109.5
O1—C11—C10124.65 (18)H20A—C20—H20B109.5
O1—C11—C6115.03 (17)C19—C20—H20C109.5
C10—C11—C6120.32 (18)H20A—C20—H20C109.5
O1—C12—H12A109.5H20B—C20—H20C109.5
O1—C12—H12B109.5C11—O1—C12118.66 (17)
H12A—C12—H12B109.5C15—O3—C16116.32 (19)
O1—C12—H12C109.5C18—O5—C19117.7 (2)
H12A—C12—H12C109.5C2—S1—C391.58 (10)
C4—C1—C2—S10.5 (2)S1—C3—C13—C14−10.9 (3)
C13—C3—C4—C1177.77 (18)C3—C13—C14—C18178.9 (2)
S1—C3—C4—C10.3 (2)C3—C13—C14—C150.9 (3)
C13—C3—C4—C5−1.4 (3)C13—C14—C15—O2103.5 (3)
S1—C3—C4—C5−178.86 (14)C18—C14—C15—O2−74.5 (3)
C2—C1—C4—C3−0.5 (3)C13—C14—C15—O3−74.7 (2)
C2—C1—C4—C5178.72 (18)C18—C14—C15—O3107.2 (2)
C3—C4—C5—C6110.5 (2)C13—C14—C18—O4−8.6 (3)
C1—C4—C5—C6−68.6 (2)C15—C14—C18—O4169.6 (2)
C4—C5—C6—C796.2 (2)C13—C14—C18—O5171.06 (18)
C4—C5—C6—C11−81.9 (2)C15—C14—C18—O5−10.8 (3)
C11—C6—C7—C80.4 (3)C10—C11—O1—C12−3.5 (3)
C5—C6—C7—C8−177.7 (2)C6—C11—O1—C12176.92 (18)
C6—C7—C8—C9−0.2 (4)O2—C15—O3—C16−4.3 (3)
C7—C8—C9—C100.3 (4)C14—C15—O3—C16173.90 (19)
C8—C9—C10—C11−0.4 (4)C17—C16—O3—C15−167.5 (2)
C9—C10—C11—O1−179.0 (2)O4—C18—O5—C19−2.1 (4)
C9—C10—C11—C60.5 (3)C14—C18—O5—C19178.30 (19)
C7—C6—C11—O1179.11 (18)C20—C19—O5—C1895.8 (3)
C5—C6—C11—O1−2.8 (3)C1—C2—S1—C3−0.25 (18)
C7—C6—C11—C10−0.5 (3)C4—C3—S1—C2−0.03 (16)
C5—C6—C11—C10177.62 (19)C13—C3—S1—C2−177.60 (17)
C4—C3—C13—C14171.9 (2)
D—H···AD—HH···AD···AD—H···A
C7—H7···O2i0.932.553.429 (3)159.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O2i0.932.553.429 (3)159

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New thiophene analogues of kenpaullone: synthesis and biological evaluation in breast cancer cells.

Authors:  Laurent Brault; Evelyne Migianu; Adrien Néguesque; Eric Battaglia; Denyse Bagrel; Gilbert Kirsch
Journal:  Eur J Med Chem       Date:  2005-04-12       Impact factor: 6.514

3.  Synthesis, characterization and biological activities of some new benzo[b]thiophene derivatives.

Authors:  Arun M Isloor; Balakrishna Kalluraya; K Sridhar Pai
Journal:  Eur J Med Chem       Date:  2009-11-11       Impact factor: 6.514

4.  5-(Methoxy-carbon-yl)thio-phene-2-carboxylic acid.

Authors:  Guang-Ming Xia; Mu-Wei Ji; Ping Lu; Guo-Xin Sun; Wen-Fang Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-16

5.  Diethyl 2-amino-5-[(E)-(furan-2-yl-methyl-idene)amino]-thio-phene-3,4-di-carboxyl-ate.

Authors:  Stéphane Dufresne; W G Skene
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-31

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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