Literature DB >> 21837078

(4-Nitrophenyl)(1,2,3,9-tetrahydro-pyrrolo[2,1-b]quinazolin-3-yl)methanol monohydrate.

Burkhon Zh Elmuradov1, Charoskhon E Makhmadiyarova, Kambarali K Turgunov, Bakhodir Tashkhodjaev, Khusnutdin M Shakhidoyatov.   

Abstract

In the crystal structure of the title compound, C(18)H(17)N(3)O(3)·H(2)O, the mol-ecules are linked by O-H⋯O and O-H⋯N hydrogen bonds, resulting in a chain along the a axis. The crystal structure is stabilized by weak inter-molecular C-H⋯π (ring) hydrogen bonds and aromatic π⋯π stacking inter-actions [centroid-centroid distance = 3.902 (1) Å] between the pyrimidino rings of the quinazoline system. The tricyclic quinazoline fragment is almost planar (rms deviation = 0.0139 Å) with the two methylene C atoms of the pyrrolo ring deviating by 0.148 (2) and -0.081 (3) Å from the plane through the other atoms. The 4-nitrophenyl ring makes a dihedral angle of 12.55 (7)° with the tricyclic ring system.

Entities:  

Year:  2011        PMID: 21837078      PMCID: PMC3151778          DOI: 10.1107/S1600536811021775

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to tricyclic quinazoline alkaloids, see: Shakhidoyatov et al. (1988 ▶). For the synthesis of 1,2,3,9-tetra­hydro-pyrrolo­[2,1-b]quinazoline, see: Jahng et al. (2008 ▶). For the physiological activity of quinazoline derivatives, see: Al-Shamma et al. (1981 ▶); Yunusov et al. (1978 ▶).

Experimental

Crystal data

C18H17N3O3·H2O M = 341.36 Triclinic, a = 6.2459 (7) Å b = 11.4629 (11) Å c = 11.8400 (13) Å α = 91.932 (8)° β = 95.589 (9)° γ = 104.747 (9)° V = 814.37 (15) Å3 Z = 2 Cu Kα radiation μ = 0.83 mm−1 T = 295 K 0.50 × 0.35 × 0.15 mm

Data collection

Oxford Diffraction Xcalibur Ruby diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.793, T max = 1.000 4649 measured reflections 2867 independent reflections 2076 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.124 S = 1.03 2867 reflections 238 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021775/rk2278sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021775/rk2278Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811021775/rk2278Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17N3O3·H2OZ = 2
Mr = 341.36F(000) = 360
Triclinic, P1Dx = 1.392 Mg m3
Hall symbol: -P 1Melting point = 473(2)–474(2) K
a = 6.2459 (7) ÅCu Kα radiation, λ = 1.54180 Å
b = 11.4629 (11) ÅCell parameters from 1912 reflections
c = 11.8400 (13) Åθ = 3.8–66.8°
α = 91.932 (8)°µ = 0.83 mm1
β = 95.589 (9)°T = 295 K
γ = 104.747 (9)°Prism, light-yellow
V = 814.37 (15) Å30.50 × 0.35 × 0.15 mm
Oxford Diffraction Xcalibur Ruby diffractometer2867 independent reflections
Radiation source: Enhance (Cu) X-ray Source2076 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 10.2576 pixels mm-1θmax = 66.9°, θmin = 3.8°
ω–scansh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −13→13
Tmin = 0.793, Tmax = 1.000l = −11→14
4649 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0752P)2 + 0.0389P] where P = (Fo2 + 2Fc2)/3
2867 reflections(Δ/σ)max = 0.001
238 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.8540 (2)0.61715 (12)0.92847 (12)0.0555 (4)
O20.6598 (3)1.09493 (15)1.24380 (17)0.0991 (6)
O30.3240 (3)0.99048 (18)1.24831 (17)0.1005 (6)
N10.3825 (2)0.45278 (13)0.71834 (12)0.0471 (4)
C20.5561 (3)0.54174 (16)0.71298 (14)0.0427 (4)
N30.7234 (2)0.54380 (13)0.65065 (13)0.0487 (4)
C40.7416 (3)0.44111 (18)0.58074 (16)0.0537 (5)
H4A0.87830.41970.60600.064*
H4B0.74730.46240.50230.064*
C4A0.5454 (3)0.33484 (17)0.58861 (15)0.0475 (4)
C50.5291 (4)0.22532 (19)0.53039 (18)0.0636 (6)
H5A0.64150.21780.48680.076*
C60.3493 (4)0.1273 (2)0.5359 (2)0.0700 (6)
H6A0.34140.05450.49640.084*
C70.1821 (4)0.13746 (18)0.59957 (19)0.0643 (6)
H7A0.05990.07190.60280.077*
C80.1959 (3)0.24550 (17)0.65902 (17)0.0558 (5)
H8A0.08280.25180.70270.067*
C8A0.3761 (3)0.34467 (16)0.65443 (14)0.0451 (4)
C90.5996 (3)0.65999 (15)0.78287 (15)0.0457 (4)
H9A0.47100.69400.76980.055*
C100.8016 (4)0.74163 (18)0.73443 (18)0.0609 (5)
H10A0.75620.80170.68880.073*
H10B0.91290.78280.79550.073*
C110.8949 (3)0.65817 (18)0.66131 (18)0.0575 (5)
H11A0.91940.68980.58740.069*
H11B1.03450.64830.69800.069*
C120.6388 (3)0.63750 (15)0.90930 (14)0.0433 (4)
H12A0.52950.56310.92400.052*
C130.6112 (3)0.73811 (15)0.98840 (14)0.0425 (4)
C140.7810 (3)0.83964 (17)1.02340 (17)0.0563 (5)
H14A0.91960.84850.99730.068*
C150.7481 (3)0.92825 (17)1.09669 (18)0.0611 (5)
H15A0.86300.99671.11930.073*
C160.5446 (3)0.91394 (16)1.13547 (16)0.0510 (5)
C170.3738 (3)0.8124 (2)1.10522 (19)0.0652 (6)
H17A0.23730.80261.13400.078*
C180.4091 (3)0.72560 (19)1.03133 (19)0.0619 (6)
H18A0.29420.65681.00980.074*
N190.5065 (4)1.00649 (17)1.21455 (16)0.0689 (5)
H10.878 (4)0.600 (3)1.006 (3)0.113 (10)*
O1W0.0490 (2)0.43285 (14)0.85779 (12)0.0573 (4)
H1W0.151 (4)0.444 (2)0.812 (2)0.081 (8)*
H2W−0.024 (4)0.490 (3)0.864 (2)0.107 (10)*
U11U22U33U12U13U23
O10.0543 (8)0.0736 (9)0.0481 (8)0.0331 (7)0.0083 (6)0.0005 (7)
O20.1175 (15)0.0596 (10)0.1127 (15)0.0132 (10)0.0153 (11)−0.0336 (10)
O30.0964 (13)0.1053 (13)0.1106 (15)0.0431 (11)0.0318 (11)−0.0328 (11)
N10.0458 (8)0.0505 (9)0.0447 (8)0.0111 (7)0.0108 (7)−0.0062 (7)
C20.0426 (9)0.0493 (10)0.0379 (9)0.0156 (8)0.0039 (7)0.0014 (7)
N30.0474 (8)0.0537 (9)0.0458 (9)0.0118 (7)0.0136 (7)−0.0008 (7)
C40.0515 (11)0.0680 (12)0.0460 (11)0.0219 (9)0.0116 (8)−0.0019 (9)
C4A0.0520 (10)0.0563 (11)0.0376 (9)0.0212 (9)0.0036 (8)−0.0013 (8)
C50.0705 (14)0.0696 (14)0.0563 (12)0.0293 (11)0.0087 (10)−0.0112 (10)
C60.0858 (16)0.0566 (12)0.0676 (14)0.0239 (12)0.0001 (12)−0.0163 (11)
C70.0711 (14)0.0504 (11)0.0652 (13)0.0071 (10)0.0025 (11)−0.0043 (10)
C80.0588 (12)0.0556 (11)0.0521 (12)0.0125 (9)0.0103 (9)−0.0020 (9)
C8A0.0498 (10)0.0481 (10)0.0381 (9)0.0147 (8)0.0038 (8)0.0000 (7)
C90.0472 (10)0.0466 (9)0.0443 (10)0.0153 (8)0.0032 (8)−0.0012 (8)
C100.0749 (14)0.0518 (11)0.0520 (12)0.0069 (10)0.0126 (10)0.0050 (9)
C110.0522 (11)0.0611 (12)0.0553 (12)0.0051 (9)0.0111 (9)0.0072 (9)
C120.0404 (9)0.0465 (9)0.0447 (10)0.0130 (8)0.0097 (7)−0.0007 (8)
C130.0394 (9)0.0471 (9)0.0412 (9)0.0121 (8)0.0042 (7)0.0001 (7)
C140.0465 (10)0.0555 (11)0.0630 (13)0.0028 (9)0.0182 (9)−0.0053 (9)
C150.0610 (12)0.0463 (10)0.0670 (13)−0.0034 (9)0.0132 (10)−0.0087 (9)
C160.0609 (12)0.0478 (10)0.0474 (10)0.0211 (9)0.0050 (9)−0.0035 (8)
C170.0436 (11)0.0751 (14)0.0766 (14)0.0156 (10)0.0139 (10)−0.0211 (11)
C180.0382 (10)0.0673 (12)0.0728 (14)0.0025 (9)0.0107 (9)−0.0252 (10)
N190.0874 (14)0.0598 (11)0.0644 (12)0.0304 (11)0.0071 (10)−0.0099 (9)
O1W0.0554 (9)0.0704 (9)0.0539 (8)0.0256 (7)0.0187 (7)0.0049 (7)
O1—C121.420 (2)C9—C121.534 (2)
O1—H10.95 (3)C9—C101.540 (3)
O2—N191.217 (2)C9—H9A0.9800
O3—N191.216 (2)C10—C111.527 (3)
N1—C21.294 (2)C10—H10A0.9700
N1—C8A1.420 (2)C10—H10B0.9700
C2—N31.333 (2)C11—H11A0.9700
C2—C91.513 (2)C11—H11B0.9700
N3—C41.451 (2)C12—C131.515 (2)
N3—C111.459 (2)C12—H12A0.9800
C4—C4A1.505 (3)C13—C141.380 (2)
C4—H4A0.9700C13—C181.382 (2)
C4—H4B0.9700C14—C151.381 (3)
C4A—C51.387 (3)C14—H14A0.9300
C4A—C8A1.398 (2)C15—C161.366 (3)
C5—C61.380 (3)C15—H15A0.9300
C5—H5A0.9300C16—C171.374 (3)
C6—C71.372 (3)C16—N191.471 (2)
C6—H6A0.9300C17—C181.377 (3)
C7—C81.383 (3)C17—H17A0.9300
C7—H7A0.9300C18—H18A0.9300
C8—C8A1.388 (3)O1W—H1W0.86 (3)
C8—H8A0.9300O1W—H2W0.89 (3)
C12—O1—H1108.1 (17)C11—C10—H10A110.5
C2—N1—C8A115.94 (14)C9—C10—H10A110.5
N1—C2—N3126.93 (16)C11—C10—H10B110.5
N1—C2—C9123.07 (15)C9—C10—H10B110.5
N3—C2—C9109.97 (15)H10A—C10—H10B108.7
C2—N3—C4123.89 (15)N3—C11—C10104.22 (14)
C2—N3—C11114.25 (15)N3—C11—H11A110.9
C4—N3—C11121.82 (14)C10—C11—H11A110.9
N3—C4—C4A110.24 (14)N3—C11—H11B110.9
N3—C4—H4A109.6C10—C11—H11B110.9
C4A—C4—H4A109.6H11A—C11—H11B108.9
N3—C4—H4B109.6O1—C12—C13112.19 (14)
C4A—C4—H4B109.6O1—C12—C9107.19 (13)
H4A—C4—H4B108.1C13—C12—C9113.63 (14)
C5—C4A—C8A118.79 (18)O1—C12—H12A107.9
C5—C4A—C4120.53 (17)C13—C12—H12A107.9
C8A—C4A—C4120.68 (16)C9—C12—H12A107.9
C6—C5—C4A121.3 (2)C14—C13—C18118.21 (17)
C6—C5—H5A119.4C14—C13—C12123.21 (15)
C4A—C5—H5A119.4C18—C13—C12118.53 (16)
C7—C6—C5119.88 (19)C13—C14—C15120.99 (17)
C7—C6—H6A120.1C13—C14—H14A119.5
C5—C6—H6A120.1C15—C14—H14A119.5
C6—C7—C8119.8 (2)C16—C15—C14119.12 (18)
C6—C7—H7A120.1C16—C15—H15A120.4
C8—C7—H7A120.1C14—C15—H15A120.4
C7—C8—C8A120.87 (19)C15—C16—C17121.54 (17)
C7—C8—H8A119.6C15—C16—N19120.08 (18)
C8A—C8—H8A119.6C17—C16—N19118.35 (18)
C8—C8A—C4A119.37 (17)C16—C17—C18118.45 (18)
C8—C8A—N1118.37 (16)C16—C17—H17A120.8
C4A—C8A—N1122.25 (16)C18—C17—H17A120.8
C2—C9—C12109.34 (14)C17—C18—C13121.65 (18)
C2—C9—C10103.65 (14)C17—C18—H18A119.2
C12—C9—C10114.74 (15)C13—C18—H18A119.2
C2—C9—H9A109.6O3—N19—O2123.18 (19)
C12—C9—H9A109.6O3—N19—C16118.45 (19)
C10—C9—H9A109.6O2—N19—C16118.4 (2)
C11—C10—C9106.12 (15)H1W—O1W—H2W118 (3)
Cg1 and Cg2 are the centroids of the N1,C2,N3,C4,C4A,C8A and C4A,C5–C8,C8A rings, respectively.
D—H···AD—HH···AD···AD—H···A
O1W—H1W···N10.86 (2)1.89 (3)2.751 (2)174 (2)
O1W—H2W···O1i0.89 (3)1.97 (3)2.835 (2)162 (2)
O1—H1···O1Wii0.95 (4)1.71 (3)2.660 (2)173 (3)
C4—H4B···Cg1iii0.972.923.634 (2)131
C11—H11A···Cg2iii0.972.943.681 (2)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the N1,C2,N3,C4,C4A,C8A and C4A,C5–C8,C8A rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯N10.86 (2)1.89 (3)2.751 (2)174 (2)
O1W—H2W⋯O1i0.89 (3)1.97 (3)2.835 (2)162 (2)
O1—H1⋯O1Wii0.95 (4)1.71 (3)2.660 (2)173 (3)
C4—H4BCg1iii0.972.923.634 (2)131
C11—H11ACg2iii0.972.943.681 (2)134

Symmetry codes: (i) ; (ii) ; (iii) .

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