Literature DB >> 21837073

2-((E)-{(S)-(6-Meth-oxy-quinolin-4-yl)[(2S)-8-vinyl-quinuclidin-2-yl]methyl-imino}-meth-yl)phenol.

Yu Wei1, Wei He.   

Abstract

The title compound, C(27)H(29)N(3)O(2), adopts an E configuration with respect to the C=N bond. The molecular structure is stabilized by inter-molecular O-H⋯N inter-actions between a hy-droxy H atom and the N atom on the quinoline ring.

Entities:  

Year:  2011        PMID: 21837073      PMCID: PMC3151908          DOI: 10.1107/S1600536811021507

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on the preparation of Schiff base compounds, see: Jennings & Lovely (1991 ▶); Yoon & Jacobsen (2005 ▶). For the uses of Schiff base compounds, see: Yin et al. (2004 ▶). For the crystal structures of Schiff base compounds, see: Zhu (2011 ▶); Xie et al. (2010 ▶). For reference bond values, see: Jones (1986 ▶); Hooft et al. (2008 ▶). For information on the absolute structure of the title compound, see: Brunner et al. (1995 ▶); He et al. (2006 ▶).

Experimental

Crystal data

C27H29N3O2 M = 427.53 Orthorhombic, a = 8.9285 (15) Å b = 11.6759 (19) Å c = 21.939 (4) Å V = 2287.1 (7) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.35 × 0.29 × 0.17 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.973, T max = 0.987 11474 measured reflections 2339 independent reflections 2098 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.084 S = 1.05 2339 reflections 292 parameters H-atom parameters constrained Δρmax = 0.10 e Å−3 Δρmin = −0.10 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: Mercury (Macrae et al., 2006 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021507/jh2284sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021507/jh2284Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811021507/jh2284Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H29N3O2Dx = 1.242 Mg m3
Mr = 427.53Melting point: 438(1) K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
a = 8.9285 (15) ÅCell parameters from 4474 reflections
b = 11.6759 (19) Åθ = 2.5–27.8°
c = 21.939 (4) ŵ = 0.08 mm1
V = 2287.1 (7) Å3T = 296 K
Z = 4Block, yellow
F(000) = 9120.35 × 0.29 × 0.17 mm
Bruker APEXII CCD diffractometer2339 independent reflections
Radiation source: fine-focus sealed tube2098 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 25.1°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→10
Tmin = 0.973, Tmax = 0.987k = −13→12
11474 measured reflectionsl = −26→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.084w = 1/[σ2(Fo2) + (0.044P)2 + 0.2035P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2339 reflectionsΔρmax = 0.10 e Å3
292 parametersΔρmin = −0.10 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0073 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.41218 (19)0.89212 (15)0.85006 (7)0.0446 (4)
N20.2454 (2)1.09111 (16)0.66032 (9)0.0596 (5)
N30.7031 (2)0.98276 (17)0.88131 (7)0.0534 (5)
O10.2162 (2)0.92618 (13)0.93612 (7)0.0639 (4)
H10.27490.94310.90880.096*
O20.6132 (2)0.73226 (15)0.59318 (7)0.0676 (5)
C10.2036 (2)0.81020 (19)0.93959 (8)0.0478 (5)
C20.1042 (3)0.7639 (2)0.98102 (10)0.0648 (7)
H20.04690.81161.00570.078*
C30.0903 (3)0.6468 (2)0.98559 (11)0.0714 (7)
H30.02360.61591.01370.086*
C40.1735 (3)0.5744 (2)0.94915 (11)0.0706 (7)
H40.16270.49540.95240.085*
C50.2728 (3)0.62049 (19)0.90787 (11)0.0578 (6)
H50.32950.57200.88340.069*
C60.2897 (2)0.73866 (18)0.90213 (8)0.0443 (5)
C70.3947 (2)0.78523 (18)0.85793 (9)0.0446 (5)
H70.45130.73480.83450.054*
C80.5154 (2)0.93012 (18)0.80204 (8)0.0425 (5)
H80.57190.86440.78650.051*
C90.4216 (2)0.98194 (16)0.75096 (8)0.0413 (4)
C100.3234 (2)1.06841 (19)0.76429 (10)0.0518 (5)
H100.31311.09320.80430.062*
C110.2389 (3)1.1196 (2)0.71834 (12)0.0573 (6)
H110.17331.17790.72940.069*
C120.3404 (2)1.00365 (19)0.64556 (10)0.0494 (5)
C130.3487 (3)0.9714 (2)0.58382 (10)0.0596 (6)
H130.29161.01070.55520.071*
C140.4382 (3)0.8840 (2)0.56510 (9)0.0601 (6)
H140.44230.86430.52410.072*
C150.5242 (2)0.82375 (19)0.60786 (9)0.0495 (5)
C160.5222 (2)0.85392 (18)0.66807 (9)0.0458 (5)
H160.58160.81400.69570.055*
C170.4310 (2)0.94490 (17)0.68904 (8)0.0410 (4)
C180.6243 (2)1.02128 (19)0.82638 (8)0.0465 (5)
H180.56471.08850.83770.056*
C190.7364 (3)1.0596 (2)0.77607 (10)0.0639 (7)
H19A0.72361.01290.73990.077*
H19B0.71841.13900.76520.077*
C200.8952 (3)1.0458 (2)0.80107 (11)0.0639 (6)
H200.96831.06890.77010.077*
C210.9177 (3)0.9201 (2)0.81741 (14)0.0804 (8)
H21A1.01950.90760.83130.096*
H21B0.90030.87240.78190.096*
C220.8070 (3)0.8886 (2)0.86801 (12)0.0674 (7)
H22A0.75020.82160.85580.081*
H22B0.86210.86930.90470.081*
C230.7916 (3)1.0797 (2)0.90419 (10)0.0636 (6)
H23A0.83761.05820.94260.076*
H23B0.72511.14380.91190.076*
C240.9161 (3)1.1181 (2)0.85889 (11)0.0603 (6)
H241.01351.09870.87680.072*
C250.9125 (3)1.2447 (2)0.84784 (13)0.0727 (7)
H250.82331.27500.83300.087*
C261.0210 (4)1.3160 (3)0.85690 (14)0.0932 (9)
H26A1.11251.28990.87170.112*
H26B1.00771.39350.84860.112*
C270.6104 (4)0.6886 (3)0.53269 (10)0.0893 (9)
H27A0.64490.74650.50500.134*
H27B0.50990.66700.52220.134*
H27C0.67460.62280.53000.134*
U11U22U33U12U13U23
N10.0486 (9)0.0457 (10)0.0395 (9)−0.0028 (8)0.0046 (7)0.0016 (7)
N20.0560 (11)0.0516 (11)0.0712 (13)0.0021 (10)−0.0051 (10)0.0136 (10)
N30.0598 (11)0.0577 (11)0.0426 (9)−0.0051 (10)−0.0053 (8)−0.0014 (8)
O10.0809 (11)0.0513 (9)0.0596 (9)0.0002 (9)0.0226 (9)−0.0035 (8)
O20.0864 (11)0.0694 (11)0.0469 (8)0.0073 (10)0.0076 (8)−0.0099 (8)
C10.0538 (12)0.0507 (13)0.0390 (10)−0.0019 (10)0.0019 (10)0.0014 (9)
C20.0707 (15)0.0719 (17)0.0517 (13)−0.0034 (14)0.0177 (12)0.0014 (12)
C30.0781 (17)0.0786 (18)0.0574 (14)−0.0175 (15)0.0167 (13)0.0138 (13)
C40.0897 (18)0.0547 (15)0.0674 (15)−0.0137 (15)0.0075 (14)0.0125 (13)
C50.0679 (14)0.0463 (13)0.0591 (13)−0.0017 (12)0.0074 (12)0.0038 (11)
C60.0482 (11)0.0473 (12)0.0375 (9)−0.0018 (9)−0.0014 (9)0.0036 (9)
C70.0479 (11)0.0454 (12)0.0405 (10)0.0012 (10)0.0033 (9)−0.0003 (9)
C80.0442 (10)0.0453 (11)0.0379 (9)−0.0011 (9)0.0046 (8)0.0007 (9)
C90.0408 (10)0.0394 (10)0.0438 (10)−0.0071 (9)0.0025 (8)0.0045 (9)
C100.0516 (12)0.0479 (12)0.0559 (12)0.0017 (11)0.0078 (10)0.0002 (10)
C110.0530 (12)0.0456 (12)0.0734 (16)0.0042 (11)0.0064 (11)0.0093 (11)
C120.0488 (11)0.0470 (12)0.0523 (12)−0.0088 (10)−0.0035 (10)0.0095 (10)
C130.0674 (14)0.0602 (14)0.0510 (12)−0.0078 (13)−0.0152 (11)0.0141 (11)
C140.0752 (15)0.0676 (16)0.0375 (11)−0.0139 (14)−0.0051 (11)0.0019 (11)
C150.0566 (12)0.0479 (12)0.0441 (11)−0.0086 (11)0.0055 (10)−0.0015 (9)
C160.0497 (11)0.0465 (12)0.0413 (10)−0.0045 (10)−0.0020 (9)0.0030 (9)
C170.0401 (10)0.0406 (11)0.0422 (9)−0.0085 (8)−0.0010 (8)0.0040 (9)
C180.0502 (11)0.0476 (12)0.0415 (10)−0.0052 (10)0.0022 (9)−0.0005 (9)
C190.0603 (13)0.0809 (17)0.0504 (12)−0.0277 (14)0.0008 (11)0.0005 (13)
C200.0519 (12)0.0726 (17)0.0672 (14)−0.0130 (12)0.0106 (11)−0.0142 (13)
C210.0683 (15)0.0689 (18)0.104 (2)−0.0005 (14)0.0052 (16)−0.0314 (16)
C220.0717 (15)0.0593 (15)0.0713 (15)0.0022 (13)−0.0193 (13)−0.0007 (12)
C230.0668 (14)0.0665 (15)0.0574 (13)−0.0067 (13)−0.0074 (12)−0.0147 (12)
C240.0481 (12)0.0574 (14)0.0755 (15)−0.0019 (11)−0.0123 (11)−0.0088 (12)
C250.0646 (15)0.0635 (16)0.0900 (19)0.0015 (14)−0.0104 (14)−0.0072 (14)
C260.091 (2)0.0693 (19)0.119 (2)−0.0187 (18)−0.003 (2)−0.0112 (18)
C270.133 (3)0.084 (2)0.0506 (13)0.006 (2)0.0223 (16)−0.0132 (14)
N1—C71.269 (3)C13—C141.359 (3)
N1—C81.468 (2)C13—H130.9300
N2—C111.317 (3)C14—C151.402 (3)
N2—C121.367 (3)C14—H140.9300
N3—C181.466 (3)C15—C161.367 (3)
N3—C221.468 (3)C16—C171.415 (3)
N3—C231.468 (3)C16—H160.9300
O1—C11.361 (3)C18—C191.556 (3)
O1—H10.8200C18—H180.9800
O2—C151.369 (3)C19—C201.529 (3)
O2—C271.422 (3)C19—H19A0.9700
C1—C21.380 (3)C19—H19B0.9700
C1—C61.401 (3)C20—C211.525 (4)
C2—C31.377 (4)C20—C241.535 (3)
C2—H20.9300C20—H200.9800
C3—C41.381 (4)C21—C221.531 (4)
C3—H30.9300C21—H21A0.9700
C4—C51.377 (3)C21—H21B0.9700
C4—H40.9300C22—H22A0.9700
C5—C61.394 (3)C22—H22B0.9700
C5—H50.9300C23—C241.558 (3)
C6—C71.455 (3)C23—H23A0.9700
C7—H70.9300C23—H23B0.9700
C8—C91.524 (3)C24—C251.498 (4)
C8—C181.537 (3)C24—H240.9800
C8—H80.9800C25—C261.293 (4)
C9—C101.369 (3)C25—H250.9300
C9—C171.428 (3)C26—H26A0.9300
C10—C111.394 (3)C26—H26B0.9300
C10—H100.9300C27—H27A0.9600
C11—H110.9300C27—H27B0.9600
C12—C131.408 (3)C27—H27C0.9600
C12—C171.426 (3)
C7—N1—C8118.14 (18)C16—C17—C12118.01 (18)
C11—N2—C12116.44 (19)C16—C17—C9124.77 (17)
C18—N3—C22111.69 (17)C12—C17—C9117.22 (18)
C18—N3—C23107.62 (18)N3—C18—C8112.13 (17)
C22—N3—C23107.80 (17)N3—C18—C19111.27 (17)
C1—O1—H1109.5C8—C18—C19111.09 (16)
C15—O2—C27119.3 (2)N3—C18—H18107.4
O1—C1—C2118.6 (2)C8—C18—H18107.4
O1—C1—C6121.00 (18)C19—C18—H18107.4
C2—C1—C6120.4 (2)C20—C19—C18108.15 (19)
C3—C2—C1119.6 (2)C20—C19—H19A110.1
C3—C2—H2120.2C18—C19—H19A110.1
C1—C2—H2120.2C20—C19—H19B110.1
C2—C3—C4121.1 (2)C18—C19—H19B110.1
C2—C3—H3119.4H19A—C19—H19B108.4
C4—C3—H3119.4C21—C20—C19107.9 (2)
C5—C4—C3119.2 (2)C21—C20—C24108.6 (2)
C5—C4—H4120.4C19—C20—C24110.6 (2)
C3—C4—H4120.4C21—C20—H20109.9
C4—C5—C6121.1 (2)C19—C20—H20109.9
C4—C5—H5119.5C24—C20—H20109.9
C6—C5—H5119.5C20—C21—C22108.5 (2)
C5—C6—C1118.5 (2)C20—C21—H21A110.0
C5—C6—C7120.0 (2)C22—C21—H21A110.0
C1—C6—C7121.46 (19)C20—C21—H21B110.0
N1—C7—C6122.49 (19)C22—C21—H21B110.0
N1—C7—H7118.8H21A—C21—H21B108.4
C6—C7—H7118.8N3—C22—C21111.8 (2)
N1—C8—C9107.63 (15)N3—C22—H22A109.2
N1—C8—C18110.92 (15)C21—C22—H22A109.2
C9—C8—C18109.15 (16)N3—C22—H22B109.2
N1—C8—H8109.7C21—C22—H22B109.2
C9—C8—H8109.7H22A—C22—H22B107.9
C18—C8—H8109.7N3—C23—C24112.82 (18)
C10—C9—C17117.65 (18)N3—C23—H23A109.0
C10—C9—C8119.18 (18)C24—C23—H23A109.0
C17—C9—C8123.17 (17)N3—C23—H23B109.0
C9—C10—C11120.6 (2)C24—C23—H23B109.0
C9—C10—H10119.7H23A—C23—H23B107.8
C11—C10—H10119.7C25—C24—C20114.0 (2)
N2—C11—C10124.5 (2)C25—C24—C23111.8 (2)
N2—C11—H11117.7C20—C24—C23106.36 (18)
C10—C11—H11117.7C25—C24—H24108.2
N2—C12—C13117.4 (2)C20—C24—H24108.2
N2—C12—C17123.57 (19)C23—C24—H24108.2
C13—C12—C17119.0 (2)C26—C25—C24126.5 (3)
C14—C13—C12121.5 (2)C26—C25—H25116.8
C14—C13—H13119.2C24—C25—H25116.8
C12—C13—H13119.2C25—C26—H26A120.0
C13—C14—C15119.8 (2)C25—C26—H26B120.0
C13—C14—H14120.1H26A—C26—H26B120.0
C15—C14—H14120.1O2—C27—H27A109.5
C16—C15—O2115.9 (2)O2—C27—H27B109.5
C16—C15—C14120.6 (2)H27A—C27—H27B109.5
O2—C15—C14123.51 (18)O2—C27—H27C109.5
C15—C16—C17121.0 (2)H27A—C27—H27C109.5
C15—C16—H16119.5H27B—C27—H27C109.5
C17—C16—H16119.5
O1—C1—C2—C3−179.6 (2)C15—C16—C17—C9179.84 (19)
C6—C1—C2—C30.2 (4)N2—C12—C17—C16178.52 (19)
C1—C2—C3—C4−0.4 (4)C13—C12—C17—C16−1.9 (3)
C2—C3—C4—C50.5 (4)N2—C12—C17—C9−0.9 (3)
C3—C4—C5—C6−0.4 (4)C13—C12—C17—C9178.69 (19)
C4—C5—C6—C10.2 (3)C10—C9—C17—C16−177.42 (18)
C4—C5—C6—C7−179.6 (2)C8—C9—C17—C162.7 (3)
O1—C1—C6—C5179.7 (2)C10—C9—C17—C121.9 (3)
C2—C1—C6—C5−0.2 (3)C8—C9—C17—C12−177.90 (17)
O1—C1—C6—C7−0.5 (3)C22—N3—C18—C867.6 (2)
C2—C1—C6—C7179.7 (2)C23—N3—C18—C8−174.22 (17)
C8—N1—C7—C6−176.87 (16)C22—N3—C18—C19−57.5 (2)
C5—C6—C7—N1178.6 (2)C23—N3—C18—C1960.7 (2)
C1—C6—C7—N1−1.3 (3)N1—C8—C18—N353.4 (2)
C7—N1—C8—C9109.5 (2)C9—C8—C18—N3171.84 (16)
C7—N1—C8—C18−131.2 (2)N1—C8—C18—C19178.63 (18)
N1—C8—C9—C1054.8 (2)C9—C8—C18—C19−63.0 (2)
C18—C8—C9—C10−65.7 (2)N3—C18—C19—C20−0.7 (3)
N1—C8—C9—C17−125.40 (19)C8—C18—C19—C20−126.4 (2)
C18—C8—C9—C17114.15 (19)C18—C19—C20—C2159.8 (3)
C17—C9—C10—C11−1.5 (3)C18—C19—C20—C24−58.9 (3)
C8—C9—C10—C11178.35 (19)C19—C20—C21—C22−62.9 (3)
C12—N2—C11—C101.3 (3)C24—C20—C21—C2257.0 (3)
C9—C10—C11—N2−0.2 (3)C18—N3—C22—C2154.8 (3)
C11—N2—C12—C13179.7 (2)C23—N3—C22—C21−63.2 (2)
C11—N2—C12—C17−0.7 (3)C20—C21—C22—N35.9 (3)
N2—C12—C13—C14−178.8 (2)C18—N3—C23—C24−63.8 (2)
C17—C12—C13—C141.6 (3)C22—N3—C23—C2456.8 (3)
C12—C13—C14—C150.3 (3)C21—C20—C24—C25174.1 (2)
C27—O2—C15—C16174.0 (2)C19—C20—C24—C25−67.7 (3)
C27—O2—C15—C14−5.4 (3)C21—C20—C24—C23−62.3 (3)
C13—C14—C15—C16−1.8 (3)C19—C20—C24—C2356.0 (3)
C13—C14—C15—O2177.6 (2)N3—C23—C24—C25129.9 (2)
O2—C15—C16—C17−178.10 (18)N3—C23—C24—C204.9 (3)
C14—C15—C16—C171.4 (3)C20—C24—C25—C26−116.8 (3)
C15—C16—C17—C120.5 (3)C23—C24—C25—C26122.6 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.882.605 (2)148.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.882.605 (2)148
  5 in total

1.  Highly enantioselective thiourea-catalyzed nitro-Mannich reactions.

Authors:  Tehshik P Yoon; Eric N Jacobsen
Journal:  Angew Chem Int Ed Engl       Date:  2005-01-07       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (E)-2,4-Dichloro-6-{1-[(2-chloro-eth-yl)imino]-eth-yl}phenol.

Authors:  Yong-Sheng Xie; Wen-Liang Dong; Li-Ping He; Xin-Ling Zhang; Bao-Xiang Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-10

4.  N'-(2-Meth-oxy-benzyl-idene)-4-nitro-benzohydrazide.

Authors:  Hai-Yun Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09

5.  Determination of absolute structure using Bayesian statistics on Bijvoet differences.

Authors:  Rob W W Hooft; Leo H Straver; Anthony L Spek
Journal:  J Appl Crystallogr       Date:  2008-01-16       Impact factor: 3.304

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.