Literature DB >> 21837062

3,5-Dicarboxypyridinium fluoride.

Seik Weng Ng, Yi-Ping Tong.   

Abstract

The cation of the title salt, C(7)H(6)NO(4) (+.)F(-), lies on a twofold rotation axis that passes through the N and 4-C atoms of the pyridine ring; the carb-oxy-lic acid substituent features unambiguous carbon-oxygen single and double bonds. The fluoride ion is a hydrogen-bond acceptor to two hy-droxy and one amino groups, these O-H⋯F and N-H⋯F hydrogen bonds leading to the formation of a layer structure parallel to the ab plane. The F atom lies on a position of 2 site symmetry.

Entities:  

Year:  2011        PMID: 21837062      PMCID: PMC3151941          DOI: 10.1107/S1600536811021593

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of pyridine-3,5-dicarb­oxy­lic acid, see: Cowan et al. (2005 ▶); Takusagawa et al. (1973 ▶).

Experimental

Crystal data

C7H6NO4 +·F− M = 187.13 Monoclinic, a = 11.3959 (14) Å b = 11.4503 (14) Å c = 6.1601 (7) Å β = 104.197 (2)° V = 779.26 (16) Å3 Z = 4 Mo Kα radiation μ = 0.15 mm−1 T = 293 K 0.40 × 0.35 × 0.25 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.686, T max = 0.746 2354 measured reflections 883 independent reflections 750 reflections with I > 2σ(I) R int = 0.012

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.105 S = 1.11 883 reflections 67 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021593/si2360sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021593/si2360Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811021593/si2360Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H6NO4+·FF(000) = 384
Mr = 187.13Dx = 1.595 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1129 reflections
a = 11.3959 (14) Åθ = 2.6–28.4°
b = 11.4503 (14) ŵ = 0.15 mm1
c = 6.1601 (7) ÅT = 293 K
β = 104.197 (2)°Block, yellow
V = 779.26 (16) Å30.40 × 0.35 × 0.25 mm
Z = 4
Bruker SMART APEX diffractometer883 independent reflections
Radiation source: fine-focus sealed tube750 reflections with I > 2σ(I)
graphiteRint = 0.012
ω scansθmax = 27.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→14
Tmin = 0.686, Tmax = 0.746k = −13→14
2354 measured reflectionsl = −8→5
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 1.11w = 1/[σ2(Fo2) + (0.0615P)2 + 0.1524P] where P = (Fo2 + 2Fc2)/3
883 reflections(Δ/σ)max = 0.001
67 parametersΔρmax = 0.29 e Å3
2 restraintsΔρmin = −0.16 e Å3
xyzUiso*/Ueq
F10.50000.54662 (9)0.75000.0536 (4)
O10.30965 (8)0.64863 (8)0.74566 (19)0.0454 (3)
H10.3745 (12)0.6097 (17)0.747 (3)0.069 (6)*
O20.21589 (9)0.47552 (8)0.71733 (17)0.0428 (3)
H20.00000.8997 (9)0.75000.050 (6)*
N10.00000.82283 (12)0.75000.0346 (4)
C10.21620 (10)0.58059 (11)0.7326 (2)0.0321 (3)
C20.10381 (10)0.64621 (10)0.73953 (19)0.0294 (3)
C30.10135 (10)0.76662 (11)0.7394 (2)0.0328 (3)
H30.17010.80870.73200.039*
C40.00000.58621 (14)0.75000.0294 (4)
H40.00000.50500.75000.035*
U11U22U33U12U13U23
F10.0272 (6)0.0273 (6)0.1130 (11)0.0000.0301 (6)0.000
O10.0245 (5)0.0335 (5)0.0811 (7)0.0017 (4)0.0183 (5)−0.0042 (5)
O20.0370 (6)0.0281 (5)0.0663 (7)0.0059 (4)0.0184 (5)−0.0033 (4)
N10.0268 (7)0.0209 (7)0.0570 (9)0.0000.0121 (6)0.000
C10.0265 (6)0.0299 (6)0.0409 (7)0.0029 (5)0.0102 (5)−0.0008 (5)
C20.0249 (6)0.0254 (6)0.0385 (6)0.0012 (4)0.0087 (5)−0.0012 (4)
C30.0239 (6)0.0260 (6)0.0495 (7)−0.0025 (4)0.0108 (5)−0.0004 (5)
C40.0272 (8)0.0218 (7)0.0394 (9)0.0000.0085 (6)0.000
O1—C11.306 (1)C1—C21.495 (2)
O1—H10.86 (1)C2—C31.379 (2)
O2—C11.207 (2)C2—C41.383 (1)
N1—C3i1.338 (1)C3—H30.9300
N1—C31.338 (1)C4—C2i1.383 (1)
N1—H20.88 (1)C4—H40.9300
C1—O1—H1112.1 (14)C3—C2—C1121.33 (11)
C3i—N1—C3122.48 (15)C4—C2—C1120.03 (11)
C3i—N1—H2118.76 (7)N1—C3—C2119.92 (11)
C3—N1—H2118.76 (7)N1—C3—H3120.0
O2—C1—O1125.90 (11)C2—C3—H3120.0
O2—C1—C2121.15 (11)C2—C4—C2i120.44 (15)
O1—C1—C2112.95 (11)C2—C4—H4119.8
C3—C2—C4118.62 (11)C2i—C4—H4119.8
O2—C1—C2—C3−174.90 (12)C4—C2—C3—N10.20 (16)
O1—C1—C2—C35.39 (16)C1—C2—C3—N1−178.73 (9)
O2—C1—C2—C46.18 (17)C3—C2—C4—C2i−0.10 (8)
O1—C1—C2—C4−173.53 (9)C1—C2—C4—C2i178.85 (11)
C3i—N1—C3—C2−0.10 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1···F10.86 (1)1.60 (1)2.458 (1)176 (2)
N1—H2···F1ii0.88 (1)1.68 (1)2.563 (2)180
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯F10.86 (1)1.60 (1)2.458 (1)176 (2)
N1—H2⋯F1i0.88 (1)1.68 (1)2.563 (2)180

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Variable-temperature neutron diffraction studies of the short, strong hydrogen bonds in the crystal structure of pyridine-3,5-dicarboxylic acid.

Authors:  John A Cowan; Judith A K Howard; Garry J McIntyre; Samuel M F Lo; Ian D Williams
Journal:  Acta Crystallogr B       Date:  2005-11-14
  2 in total

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