| Literature DB >> 21837055 |
Edmilson Clarindo de Siqueira, Bogdan Doboszewski, James McGarrah, Alexander Y Nazarenko.
Abstract
In the title compound, C(20)H(24)O(5), the six-membered pyran-ose ring adopts a chair conformation. The dihedral angle between the planes of the phenyl groups of the benzyl substituents is 63.1°. Two types of inter-molecular O-H⋯O hydrogen bonds lead to the formation of infinite chains along the b axis. Only weak C-H⋯O contacts exist between neighboring chains.Entities:
Year: 2011 PMID: 21837055 PMCID: PMC3152021 DOI: 10.1107/S1600536811022306
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H24O5 | |
| Monoclinic, | Melting point: 454(3) K |
| Hall symbol: P 2yb | Mo |
| Cell parameters from 2505 reflections | |
| θ = 2.1–25.0° | |
| µ = 0.09 mm−1 | |
| β = 91.968 (6)° | |
| Plate, colourless | |
| 0.6 × 0.4 × 0.05 mm |
| Bruker SMART X2S diffractometer | 1695 independent reflections |
| Radiation source: XOS X-beam microfocus source | 1458 reflections with |
| doubly curved silicon crystal | |
| ω scans | θmax = 25.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 8624 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1695 reflections | (Δ/σ)max < 0.001 |
| 228 parameters | Δρmax = 0.19 e Å−3 |
| 1 restraint | Δρmin = −0.14 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.5054 (4) | 0.6502 (3) | 0.64947 (9) | 0.0699 (7) | |
| O2 | 0.6876 (3) | 0.44181 (18) | 0.54580 (7) | 0.0288 (4) | |
| O3 | 0.8458 (3) | 0.2160 (2) | 0.70085 (7) | 0.0329 (4) | |
| O4 | 1.0068 (3) | −0.0091 (2) | 0.59915 (8) | 0.0389 (4) | |
| H4 | 0.9884 | −0.0925 | 0.5735 | 0.047* | |
| O5 | 1.0291 (3) | 0.2171 (2) | 0.48840 (8) | 0.0311 (4) | |
| H5 | 1.1187 | 0.1341 | 0.4836 | 0.037* | |
| C1 | 0.7134 (5) | 0.5512 (3) | 0.65761 (12) | 0.0426 (7) | |
| H1A | 0.7402 | 0.5208 | 0.7057 | 0.051* | |
| H1B | 0.8523 | 0.6151 | 0.6427 | 0.051* | |
| C2 | 0.6801 (4) | 0.3952 (3) | 0.61547 (11) | 0.0296 (5) | |
| H2A | 0.5206 | 0.3471 | 0.6240 | 0.036* | |
| C3 | 0.8671 (4) | 0.2607 (3) | 0.63147 (10) | 0.0272 (5) | |
| H3A | 1.0284 | 0.3072 | 0.6241 | 0.033* | |
| C4 | 0.8223 (4) | 0.1094 (3) | 0.58552 (10) | 0.0285 (5) | |
| H4A | 0.6689 | 0.0569 | 0.5976 | 0.034* | |
| C5 | 0.8049 (4) | 0.1607 (3) | 0.51169 (11) | 0.0275 (5) | |
| H5A | 0.7506 | 0.0621 | 0.4839 | 0.033* | |
| C6 | 0.6287 (4) | 0.3020 (3) | 0.50228 (11) | 0.0311 (5) | |
| H6A | 0.6261 | 0.3397 | 0.4546 | 0.037* | |
| H6B | 0.4687 | 0.2606 | 0.5123 | 0.037* | |
| C9 | 1.0627 (4) | 0.1952 (4) | 0.73746 (12) | 0.0466 (7) | |
| H9A | 1.1698 | 0.2896 | 0.7274 | 0.056* | |
| H9B | 1.1392 | 0.0897 | 0.7233 | 0.056* | |
| C10 | 0.5053 (8) | 0.7934 (4) | 0.69327 (14) | 0.0781 (12) | |
| H10A | 0.3683 | 0.8656 | 0.6807 | 0.094* | |
| H10B | 0.6509 | 0.8596 | 0.6867 | 0.094* | |
| C11 | 1.0226 (4) | 0.1894 (3) | 0.81204 (11) | 0.0358 (6) | |
| C12 | 0.8296 (5) | 0.2669 (4) | 0.84079 (12) | 0.0436 (7) | |
| H12A | 0.7150 | 0.3227 | 0.8127 | 0.052* | |
| C13 | 0.8036 (5) | 0.2634 (4) | 0.90972 (13) | 0.0538 (8) | |
| H13A | 0.6711 | 0.3162 | 0.9289 | 0.065* | |
| C14 | 0.9691 (5) | 0.1834 (5) | 0.95082 (13) | 0.0595 (9) | |
| H14A | 0.9516 | 0.1822 | 0.9983 | 0.071* | |
| C15 | 1.1608 (5) | 0.1049 (4) | 0.92311 (13) | 0.0579 (8) | |
| H15A | 1.2745 | 0.0488 | 0.9514 | 0.069* | |
| C16 | 1.1858 (5) | 0.1086 (4) | 0.85404 (13) | 0.0464 (7) | |
| H16A | 1.3177 | 0.0545 | 0.8351 | 0.056* | |
| C21 | 0.4931 (5) | 0.7468 (4) | 0.76631 (13) | 0.0437 (7) | |
| C22 | 0.3085 (5) | 0.6518 (4) | 0.79079 (15) | 0.0546 (8) | |
| H22A | 0.1873 | 0.6120 | 0.7605 | 0.066* | |
| C23 | 0.2996 (6) | 0.6149 (5) | 0.85879 (17) | 0.0656 (9) | |
| H23A | 0.1729 | 0.5496 | 0.8750 | 0.079* | |
| C24 | 0.4711 (7) | 0.6713 (5) | 0.90252 (15) | 0.0693 (10) | |
| H24A | 0.4632 | 0.6463 | 0.9493 | 0.083* | |
| C25 | 0.6537 (6) | 0.7633 (5) | 0.87996 (16) | 0.0699 (10) | |
| H25A | 0.7729 | 0.8032 | 0.9109 | 0.084* | |
| C26 | 0.6663 (5) | 0.7989 (4) | 0.81241 (16) | 0.0553 (8) | |
| H26A | 0.7974 | 0.8609 | 0.7970 | 0.066* |
| O1 | 0.1104 (18) | 0.0642 (16) | 0.0345 (10) | 0.0575 (15) | −0.0080 (10) | −0.0070 (10) |
| O2 | 0.0307 (9) | 0.0287 (10) | 0.0270 (8) | 0.0029 (7) | 0.0009 (6) | −0.0007 (7) |
| O3 | 0.0340 (8) | 0.0391 (10) | 0.0257 (7) | 0.0029 (8) | 0.0014 (6) | 0.0036 (7) |
| O4 | 0.0506 (11) | 0.0277 (10) | 0.0382 (9) | 0.0118 (9) | −0.0026 (7) | −0.0040 (7) |
| O5 | 0.0257 (8) | 0.0284 (10) | 0.0397 (9) | 0.0018 (7) | 0.0072 (6) | 0.0026 (7) |
| C1 | 0.0646 (18) | 0.0344 (16) | 0.0288 (13) | 0.0156 (14) | 0.0024 (11) | −0.0013 (11) |
| C2 | 0.0313 (13) | 0.0317 (14) | 0.0262 (11) | 0.0024 (11) | 0.0055 (9) | 0.0001 (10) |
| C3 | 0.0256 (11) | 0.0299 (14) | 0.0263 (11) | −0.0014 (10) | 0.0041 (8) | −0.0009 (10) |
| C4 | 0.0264 (12) | 0.0259 (13) | 0.0333 (12) | −0.0015 (11) | 0.0022 (9) | −0.0001 (10) |
| C5 | 0.0225 (11) | 0.0265 (13) | 0.0336 (12) | −0.0063 (10) | 0.0030 (9) | −0.0040 (10) |
| C6 | 0.0273 (12) | 0.0346 (14) | 0.0312 (12) | −0.0036 (11) | −0.0020 (9) | −0.0030 (11) |
| C9 | 0.0378 (13) | 0.066 (2) | 0.0357 (13) | 0.0138 (15) | 0.0003 (10) | −0.0026 (13) |
| C10 | 0.144 (3) | 0.050 (2) | 0.0422 (16) | 0.048 (2) | 0.0237 (18) | 0.0006 (14) |
| C11 | 0.0359 (13) | 0.0372 (16) | 0.0341 (12) | 0.0030 (12) | −0.0020 (10) | −0.0041 (11) |
| C12 | 0.0444 (15) | 0.0501 (18) | 0.0364 (13) | 0.0080 (14) | 0.0019 (10) | −0.0003 (12) |
| C13 | 0.0500 (17) | 0.067 (2) | 0.0445 (15) | 0.0013 (16) | 0.0104 (12) | −0.0051 (15) |
| C14 | 0.0630 (18) | 0.087 (3) | 0.0279 (13) | −0.006 (2) | −0.0005 (12) | 0.0018 (15) |
| C15 | 0.0548 (18) | 0.077 (2) | 0.0411 (16) | 0.0043 (18) | −0.0142 (13) | 0.0063 (16) |
| C16 | 0.0409 (15) | 0.0557 (18) | 0.0421 (15) | 0.0055 (14) | −0.0052 (11) | −0.0024 (13) |
| C21 | 0.0590 (17) | 0.0325 (16) | 0.0403 (13) | 0.0145 (14) | 0.0118 (12) | −0.0024 (12) |
| C22 | 0.0435 (16) | 0.057 (2) | 0.0626 (19) | 0.0016 (16) | −0.0069 (13) | −0.0192 (16) |
| C23 | 0.062 (2) | 0.064 (2) | 0.073 (2) | −0.0005 (18) | 0.0332 (17) | 0.0043 (19) |
| C24 | 0.078 (2) | 0.088 (3) | 0.0422 (16) | 0.030 (2) | 0.0101 (16) | 0.0052 (17) |
| C25 | 0.0581 (19) | 0.088 (3) | 0.062 (2) | 0.0231 (19) | −0.0177 (15) | −0.025 (2) |
| C26 | 0.0460 (17) | 0.0468 (18) | 0.074 (2) | −0.0019 (15) | 0.0154 (14) | −0.0077 (16) |
| O1—C1 | 1.421 (3) | C10—C21 | 1.498 (4) |
| O1—C10 | 1.433 (4) | C10—H10A | 0.9900 |
| O2—C2 | 1.431 (3) | C10—H10B | 0.9900 |
| O2—C6 | 1.440 (3) | C11—C16 | 1.381 (3) |
| O3—C9 | 1.413 (3) | C11—C12 | 1.393 (3) |
| O3—C3 | 1.429 (2) | C12—C13 | 1.379 (3) |
| O4—C4 | 1.426 (3) | C12—H12A | 0.9500 |
| O4—H4 | 0.8400 | C13—C14 | 1.376 (4) |
| O5—C5 | 1.437 (2) | C13—H13A | 0.9500 |
| O5—H5 | 0.8400 | C14—C15 | 1.382 (4) |
| C1—C2 | 1.505 (3) | C14—H14A | 0.9500 |
| C1—H1A | 0.9900 | C15—C16 | 1.381 (3) |
| C1—H1B | 0.9900 | C15—H15A | 0.9500 |
| C2—C3 | 1.531 (3) | C16—H16A | 0.9500 |
| C2—H2A | 1.0000 | C21—C26 | 1.381 (4) |
| C3—C4 | 1.526 (3) | C21—C22 | 1.390 (4) |
| C3—H3A | 1.0000 | C22—C23 | 1.381 (4) |
| C4—C5 | 1.518 (3) | C22—H22A | 0.9500 |
| C4—H4A | 1.0000 | C23—C24 | 1.355 (5) |
| C5—C6 | 1.511 (3) | C23—H23A | 0.9500 |
| C5—H5A | 1.0000 | C24—C25 | 1.355 (5) |
| C6—H6A | 0.9900 | C24—H24A | 0.9500 |
| C6—H6B | 0.9900 | C25—C26 | 1.372 (4) |
| C9—C11 | 1.503 (3) | C25—H25A | 0.9500 |
| C9—H9A | 0.9900 | C26—H26A | 0.9500 |
| C9—H9B | 0.9900 | ||
| C1—O1—C10 | 113.0 (2) | C11—C9—H9B | 109.6 |
| C2—O2—C6 | 111.27 (16) | H9A—C9—H9B | 108.1 |
| C9—O3—C3 | 114.99 (16) | O1—C10—C21 | 112.9 (3) |
| C4—O4—H4 | 109.5 | O1—C10—H10A | 109.0 |
| C5—O5—H5 | 109.5 | C21—C10—H10A | 109.0 |
| O1—C1—C2 | 107.9 (2) | O1—C10—H10B | 109.0 |
| O1—C1—H1A | 110.1 | C21—C10—H10B | 109.0 |
| C2—C1—H1A | 110.1 | H10A—C10—H10B | 107.8 |
| O1—C1—H1B | 110.1 | C16—C11—C12 | 118.5 (2) |
| C2—C1—H1B | 110.1 | C16—C11—C9 | 119.1 (2) |
| H1A—C1—H1B | 108.4 | C12—C11—C9 | 122.4 (2) |
| O2—C2—C1 | 108.3 (2) | C13—C12—C11 | 120.5 (2) |
| O2—C2—C3 | 109.75 (16) | C13—C12—H12A | 119.7 |
| C1—C2—C3 | 112.95 (19) | C11—C12—H12A | 119.7 |
| O2—C2—H2A | 108.6 | C14—C13—C12 | 120.1 (3) |
| C1—C2—H2A | 108.6 | C14—C13—H13A | 119.9 |
| C3—C2—H2A | 108.6 | C12—C13—H13A | 119.9 |
| O3—C3—C4 | 111.07 (18) | C13—C14—C15 | 120.1 (2) |
| O3—C3—C2 | 107.03 (16) | C13—C14—H14A | 119.9 |
| C4—C3—C2 | 109.23 (17) | C15—C14—H14A | 119.9 |
| O3—C3—H3A | 109.8 | C16—C15—C14 | 119.5 (3) |
| C4—C3—H3A | 109.8 | C16—C15—H15A | 120.2 |
| C2—C3—H3A | 109.8 | C14—C15—H15A | 120.2 |
| O4—C4—C5 | 112.53 (17) | C15—C16—C11 | 121.2 (3) |
| O4—C4—C3 | 107.68 (17) | C15—C16—H16A | 119.4 |
| C5—C4—C3 | 111.47 (19) | C11—C16—H16A | 119.4 |
| O4—C4—H4A | 108.3 | C26—C21—C22 | 117.3 (3) |
| C5—C4—H4A | 108.3 | C26—C21—C10 | 120.6 (3) |
| C3—C4—H4A | 108.3 | C22—C21—C10 | 122.1 (3) |
| O5—C5—C6 | 108.29 (18) | C23—C22—C21 | 120.6 (3) |
| O5—C5—C4 | 111.39 (17) | C23—C22—H22A | 119.7 |
| C6—C5—C4 | 109.87 (17) | C21—C22—H22A | 119.7 |
| O5—C5—H5A | 109.1 | C24—C23—C22 | 120.2 (3) |
| C6—C5—H5A | 109.1 | C24—C23—H23A | 119.9 |
| C4—C5—H5A | 109.1 | C22—C23—H23A | 119.9 |
| O2—C6—C5 | 111.32 (16) | C25—C24—C23 | 120.4 (3) |
| O2—C6—H6A | 109.4 | C25—C24—H24A | 119.8 |
| C5—C6—H6A | 109.4 | C23—C24—H24A | 119.8 |
| O2—C6—H6B | 109.4 | C24—C25—C26 | 120.0 (3) |
| C5—C6—H6B | 109.4 | C24—C25—H25A | 120.0 |
| H6A—C6—H6B | 108.0 | C26—C25—H25A | 120.0 |
| O3—C9—C11 | 110.49 (18) | C25—C26—C21 | 121.6 (3) |
| O3—C9—H9A | 109.6 | C25—C26—H26A | 119.2 |
| C11—C9—H9A | 109.6 | C21—C26—H26A | 119.2 |
| O3—C9—H9B | 109.6 | ||
| C10—O1—C1—C2 | 173.3 (2) | C3—O3—C9—C11 | 166.6 (2) |
| C6—O2—C2—C1 | −173.07 (19) | C1—O1—C10—C21 | −66.9 (4) |
| C6—O2—C2—C3 | 63.2 (2) | O3—C9—C11—C16 | 155.4 (3) |
| O1—C1—C2—O2 | 70.8 (2) | O3—C9—C11—C12 | −26.4 (4) |
| O1—C1—C2—C3 | −167.49 (18) | C16—C11—C12—C13 | 0.3 (4) |
| C9—O3—C3—C4 | 102.6 (2) | C9—C11—C12—C13 | −177.8 (3) |
| C9—O3—C3—C2 | −138.2 (2) | C11—C12—C13—C14 | 0.2 (5) |
| O2—C2—C3—O3 | −178.27 (18) | C12—C13—C14—C15 | −0.7 (5) |
| C1—C2—C3—O3 | 60.8 (2) | C13—C14—C15—C16 | 0.6 (5) |
| O2—C2—C3—C4 | −57.9 (2) | C14—C15—C16—C11 | 0.0 (5) |
| C1—C2—C3—C4 | −178.85 (19) | C12—C11—C16—C15 | −0.4 (4) |
| O3—C3—C4—O4 | −65.4 (2) | C9—C11—C16—C15 | 177.8 (3) |
| C2—C3—C4—O4 | 176.82 (17) | O1—C10—C21—C26 | 122.6 (3) |
| O3—C3—C4—C5 | 170.75 (16) | O1—C10—C21—C22 | −58.1 (4) |
| C2—C3—C4—C5 | 52.9 (2) | C26—C21—C22—C23 | 1.1 (4) |
| O4—C4—C5—O5 | −52.7 (2) | C10—C21—C22—C23 | −178.3 (3) |
| C3—C4—C5—O5 | 68.4 (2) | C21—C22—C23—C24 | 0.2 (5) |
| O4—C4—C5—C6 | −172.71 (18) | C22—C23—C24—C25 | −0.5 (5) |
| C3—C4—C5—C6 | −51.6 (2) | C23—C24—C25—C26 | −0.4 (5) |
| C2—O2—C6—C5 | −62.4 (2) | C24—C25—C26—C21 | 1.7 (5) |
| O5—C5—C6—O2 | −66.5 (2) | C22—C21—C26—C25 | −2.0 (4) |
| C4—C5—C6—O2 | 55.3 (2) | C10—C21—C26—C25 | 177.3 (3) |
| H··· | ||||
| O4—H4···O5i | 0.84 | 1.95 | 2.789 (2) | 175 |
| O5—H5···O2i | 0.84 | 1.98 | 2.812 (2) | 169 |
| C1—H1A···O3 | 0.99 | 2.50 | 2.893 (3) | 103 |
| C6—H6B···O5ii | 0.99 | 2.54 | 3.461 (3) | 155 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4⋯O5i | 0.84 | 1.95 | 2.789 (2) | 175 |
| O5—H5⋯O2i | 0.84 | 1.98 | 2.812 (2) | 169 |
| C6—H6 | 0.99 | 2.54 | 3.461 (3) | 155 |
Symmetry codes: (i) ; (ii) .