Literature DB >> 21837055

2,6-Anhydro-1,3-di-O-benzyl-d-mannitol.

Edmilson Clarindo de Siqueira, Bogdan Doboszewski, James McGarrah, Alexander Y Nazarenko.   

Abstract

In the title compound, C(20)H(24)O(5), the six-membered pyran-ose ring adopts a chair conformation. The dihedral angle between the planes of the phenyl groups of the benzyl substituents is 63.1°. Two types of inter-molecular O-H⋯O hydrogen bonds lead to the formation of infinite chains along the b axis. Only weak C-H⋯O contacts exist between neighboring chains.

Entities:  

Year:  2011        PMID: 21837055      PMCID: PMC3152021          DOI: 10.1107/S1600536811022306

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For syntheses of this and similar compounds, see: Barker (1970 ▶); Doboszewski (1997 ▶, 2009 ▶); Doboszewski & de Siqueria (2010 ▶); Hartman (1970a ▶,b ▶). For related structures, see: Boeyens et al. (1983 ▶); Doboszewski & Nazarenko (2003 ▶); Guiry et al. (2008 ▶); Hong et al. (2005 ▶); Vidra et al. (1982 ▶). For conformations of six-membered rings, see: Schwarz (1973 ▶); Cremer & Pople (1975 ▶); Boeyens & Dobson (1987 ▶). For hydrogen bonding in carbohydrate chemistry, see Gilli & Gilli (2009 ▶); Desiraju & Steiner (1999 ▶); Jeffrey (1997 ▶), and references therein.

Experimental

Crystal data

C20H24O5 M = 344.39 Monoclinic, a = 5.6584 (10) Å b = 7.9610 (12) Å c = 19.808 (4) Å β = 91.968 (6)° V = 891.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 200 K 0.6 × 0.4 × 0.05 mm

Data collection

Bruker SMART X2S diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008b ▶) T min = 0.91, T max = 0.98 8624 measured reflections 1695 independent reflections 1458 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.082 S = 0.99 1695 reflections 228 parameters 1 restraint H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.14 e Å−3 Data collection: GIS (Bruker, 2010 ▶); cell refinement: APEX2 (Bruker, 2010 ▶) and SAINT (Bruker, 2009 ▶); data reduction: SAINT and XPREP in SHELXTL (Sheldrick, 2008a ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008a ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008a ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811022306/zl2379sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022306/zl2379Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 5
C20H24O5F(000) = 368
Mr = 344.39Dx = 1.283 Mg m3
Monoclinic, P21Melting point: 454(3) K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 5.6584 (10) ÅCell parameters from 2505 reflections
b = 7.9610 (12) Åθ = 2.1–25.0°
c = 19.808 (4) ŵ = 0.09 mm1
β = 91.968 (6)°T = 200 K
V = 891.8 (3) Å3Plate, colourless
Z = 20.6 × 0.4 × 0.05 mm
Bruker SMART X2S diffractometer1695 independent reflections
Radiation source: XOS X-beam microfocus source1458 reflections with I > 2σ(I)
doubly curved silicon crystalRint = 0.052
ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008b)h = −6→6
Tmin = 0.91, Tmax = 0.98k = −9→9
8624 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0509P)2] where P = (Fo2 + 2Fc2)/3
1695 reflections(Δ/σ)max < 0.001
228 parametersΔρmax = 0.19 e Å3
1 restraintΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5054 (4)0.6502 (3)0.64947 (9)0.0699 (7)
O20.6876 (3)0.44181 (18)0.54580 (7)0.0288 (4)
O30.8458 (3)0.2160 (2)0.70085 (7)0.0329 (4)
O41.0068 (3)−0.0091 (2)0.59915 (8)0.0389 (4)
H40.9884−0.09250.57350.047*
O51.0291 (3)0.2171 (2)0.48840 (8)0.0311 (4)
H51.11870.13410.48360.037*
C10.7134 (5)0.5512 (3)0.65761 (12)0.0426 (7)
H1A0.74020.52080.70570.051*
H1B0.85230.61510.64270.051*
C20.6801 (4)0.3952 (3)0.61547 (11)0.0296 (5)
H2A0.52060.34710.62400.036*
C30.8671 (4)0.2607 (3)0.63147 (10)0.0272 (5)
H3A1.02840.30720.62410.033*
C40.8223 (4)0.1094 (3)0.58552 (10)0.0285 (5)
H4A0.66890.05690.59760.034*
C50.8049 (4)0.1607 (3)0.51169 (11)0.0275 (5)
H5A0.75060.06210.48390.033*
C60.6287 (4)0.3020 (3)0.50228 (11)0.0311 (5)
H6A0.62610.33970.45460.037*
H6B0.46870.26060.51230.037*
C91.0627 (4)0.1952 (4)0.73746 (12)0.0466 (7)
H9A1.16980.28960.72740.056*
H9B1.13920.08970.72330.056*
C100.5053 (8)0.7934 (4)0.69327 (14)0.0781 (12)
H10A0.36830.86560.68070.094*
H10B0.65090.85960.68670.094*
C111.0226 (4)0.1894 (3)0.81204 (11)0.0358 (6)
C120.8296 (5)0.2669 (4)0.84079 (12)0.0436 (7)
H12A0.71500.32270.81270.052*
C130.8036 (5)0.2634 (4)0.90972 (13)0.0538 (8)
H13A0.67110.31620.92890.065*
C140.9691 (5)0.1834 (5)0.95082 (13)0.0595 (9)
H14A0.95160.18220.99830.071*
C151.1608 (5)0.1049 (4)0.92311 (13)0.0579 (8)
H15A1.27450.04880.95140.069*
C161.1858 (5)0.1086 (4)0.85404 (13)0.0464 (7)
H16A1.31770.05450.83510.056*
C210.4931 (5)0.7468 (4)0.76631 (13)0.0437 (7)
C220.3085 (5)0.6518 (4)0.79079 (15)0.0546 (8)
H22A0.18730.61200.76050.066*
C230.2996 (6)0.6149 (5)0.85879 (17)0.0656 (9)
H23A0.17290.54960.87500.079*
C240.4711 (7)0.6713 (5)0.90252 (15)0.0693 (10)
H24A0.46320.64630.94930.083*
C250.6537 (6)0.7633 (5)0.87996 (16)0.0699 (10)
H25A0.77290.80320.91090.084*
C260.6663 (5)0.7989 (4)0.81241 (16)0.0553 (8)
H26A0.79740.86090.79700.066*
U11U22U33U12U13U23
O10.1104 (18)0.0642 (16)0.0345 (10)0.0575 (15)−0.0080 (10)−0.0070 (10)
O20.0307 (9)0.0287 (10)0.0270 (8)0.0029 (7)0.0009 (6)−0.0007 (7)
O30.0340 (8)0.0391 (10)0.0257 (7)0.0029 (8)0.0014 (6)0.0036 (7)
O40.0506 (11)0.0277 (10)0.0382 (9)0.0118 (9)−0.0026 (7)−0.0040 (7)
O50.0257 (8)0.0284 (10)0.0397 (9)0.0018 (7)0.0072 (6)0.0026 (7)
C10.0646 (18)0.0344 (16)0.0288 (13)0.0156 (14)0.0024 (11)−0.0013 (11)
C20.0313 (13)0.0317 (14)0.0262 (11)0.0024 (11)0.0055 (9)0.0001 (10)
C30.0256 (11)0.0299 (14)0.0263 (11)−0.0014 (10)0.0041 (8)−0.0009 (10)
C40.0264 (12)0.0259 (13)0.0333 (12)−0.0015 (11)0.0022 (9)−0.0001 (10)
C50.0225 (11)0.0265 (13)0.0336 (12)−0.0063 (10)0.0030 (9)−0.0040 (10)
C60.0273 (12)0.0346 (14)0.0312 (12)−0.0036 (11)−0.0020 (9)−0.0030 (11)
C90.0378 (13)0.066 (2)0.0357 (13)0.0138 (15)0.0003 (10)−0.0026 (13)
C100.144 (3)0.050 (2)0.0422 (16)0.048 (2)0.0237 (18)0.0006 (14)
C110.0359 (13)0.0372 (16)0.0341 (12)0.0030 (12)−0.0020 (10)−0.0041 (11)
C120.0444 (15)0.0501 (18)0.0364 (13)0.0080 (14)0.0019 (10)−0.0003 (12)
C130.0500 (17)0.067 (2)0.0445 (15)0.0013 (16)0.0104 (12)−0.0051 (15)
C140.0630 (18)0.087 (3)0.0279 (13)−0.006 (2)−0.0005 (12)0.0018 (15)
C150.0548 (18)0.077 (2)0.0411 (16)0.0043 (18)−0.0142 (13)0.0063 (16)
C160.0409 (15)0.0557 (18)0.0421 (15)0.0055 (14)−0.0052 (11)−0.0024 (13)
C210.0590 (17)0.0325 (16)0.0403 (13)0.0145 (14)0.0118 (12)−0.0024 (12)
C220.0435 (16)0.057 (2)0.0626 (19)0.0016 (16)−0.0069 (13)−0.0192 (16)
C230.062 (2)0.064 (2)0.073 (2)−0.0005 (18)0.0332 (17)0.0043 (19)
C240.078 (2)0.088 (3)0.0422 (16)0.030 (2)0.0101 (16)0.0052 (17)
C250.0581 (19)0.088 (3)0.062 (2)0.0231 (19)−0.0177 (15)−0.025 (2)
C260.0460 (17)0.0468 (18)0.074 (2)−0.0019 (15)0.0154 (14)−0.0077 (16)
O1—C11.421 (3)C10—C211.498 (4)
O1—C101.433 (4)C10—H10A0.9900
O2—C21.431 (3)C10—H10B0.9900
O2—C61.440 (3)C11—C161.381 (3)
O3—C91.413 (3)C11—C121.393 (3)
O3—C31.429 (2)C12—C131.379 (3)
O4—C41.426 (3)C12—H12A0.9500
O4—H40.8400C13—C141.376 (4)
O5—C51.437 (2)C13—H13A0.9500
O5—H50.8400C14—C151.382 (4)
C1—C21.505 (3)C14—H14A0.9500
C1—H1A0.9900C15—C161.381 (3)
C1—H1B0.9900C15—H15A0.9500
C2—C31.531 (3)C16—H16A0.9500
C2—H2A1.0000C21—C261.381 (4)
C3—C41.526 (3)C21—C221.390 (4)
C3—H3A1.0000C22—C231.381 (4)
C4—C51.518 (3)C22—H22A0.9500
C4—H4A1.0000C23—C241.355 (5)
C5—C61.511 (3)C23—H23A0.9500
C5—H5A1.0000C24—C251.355 (5)
C6—H6A0.9900C24—H24A0.9500
C6—H6B0.9900C25—C261.372 (4)
C9—C111.503 (3)C25—H25A0.9500
C9—H9A0.9900C26—H26A0.9500
C9—H9B0.9900
C1—O1—C10113.0 (2)C11—C9—H9B109.6
C2—O2—C6111.27 (16)H9A—C9—H9B108.1
C9—O3—C3114.99 (16)O1—C10—C21112.9 (3)
C4—O4—H4109.5O1—C10—H10A109.0
C5—O5—H5109.5C21—C10—H10A109.0
O1—C1—C2107.9 (2)O1—C10—H10B109.0
O1—C1—H1A110.1C21—C10—H10B109.0
C2—C1—H1A110.1H10A—C10—H10B107.8
O1—C1—H1B110.1C16—C11—C12118.5 (2)
C2—C1—H1B110.1C16—C11—C9119.1 (2)
H1A—C1—H1B108.4C12—C11—C9122.4 (2)
O2—C2—C1108.3 (2)C13—C12—C11120.5 (2)
O2—C2—C3109.75 (16)C13—C12—H12A119.7
C1—C2—C3112.95 (19)C11—C12—H12A119.7
O2—C2—H2A108.6C14—C13—C12120.1 (3)
C1—C2—H2A108.6C14—C13—H13A119.9
C3—C2—H2A108.6C12—C13—H13A119.9
O3—C3—C4111.07 (18)C13—C14—C15120.1 (2)
O3—C3—C2107.03 (16)C13—C14—H14A119.9
C4—C3—C2109.23 (17)C15—C14—H14A119.9
O3—C3—H3A109.8C16—C15—C14119.5 (3)
C4—C3—H3A109.8C16—C15—H15A120.2
C2—C3—H3A109.8C14—C15—H15A120.2
O4—C4—C5112.53 (17)C15—C16—C11121.2 (3)
O4—C4—C3107.68 (17)C15—C16—H16A119.4
C5—C4—C3111.47 (19)C11—C16—H16A119.4
O4—C4—H4A108.3C26—C21—C22117.3 (3)
C5—C4—H4A108.3C26—C21—C10120.6 (3)
C3—C4—H4A108.3C22—C21—C10122.1 (3)
O5—C5—C6108.29 (18)C23—C22—C21120.6 (3)
O5—C5—C4111.39 (17)C23—C22—H22A119.7
C6—C5—C4109.87 (17)C21—C22—H22A119.7
O5—C5—H5A109.1C24—C23—C22120.2 (3)
C6—C5—H5A109.1C24—C23—H23A119.9
C4—C5—H5A109.1C22—C23—H23A119.9
O2—C6—C5111.32 (16)C25—C24—C23120.4 (3)
O2—C6—H6A109.4C25—C24—H24A119.8
C5—C6—H6A109.4C23—C24—H24A119.8
O2—C6—H6B109.4C24—C25—C26120.0 (3)
C5—C6—H6B109.4C24—C25—H25A120.0
H6A—C6—H6B108.0C26—C25—H25A120.0
O3—C9—C11110.49 (18)C25—C26—C21121.6 (3)
O3—C9—H9A109.6C25—C26—H26A119.2
C11—C9—H9A109.6C21—C26—H26A119.2
O3—C9—H9B109.6
C10—O1—C1—C2173.3 (2)C3—O3—C9—C11166.6 (2)
C6—O2—C2—C1−173.07 (19)C1—O1—C10—C21−66.9 (4)
C6—O2—C2—C363.2 (2)O3—C9—C11—C16155.4 (3)
O1—C1—C2—O270.8 (2)O3—C9—C11—C12−26.4 (4)
O1—C1—C2—C3−167.49 (18)C16—C11—C12—C130.3 (4)
C9—O3—C3—C4102.6 (2)C9—C11—C12—C13−177.8 (3)
C9—O3—C3—C2−138.2 (2)C11—C12—C13—C140.2 (5)
O2—C2—C3—O3−178.27 (18)C12—C13—C14—C15−0.7 (5)
C1—C2—C3—O360.8 (2)C13—C14—C15—C160.6 (5)
O2—C2—C3—C4−57.9 (2)C14—C15—C16—C110.0 (5)
C1—C2—C3—C4−178.85 (19)C12—C11—C16—C15−0.4 (4)
O3—C3—C4—O4−65.4 (2)C9—C11—C16—C15177.8 (3)
C2—C3—C4—O4176.82 (17)O1—C10—C21—C26122.6 (3)
O3—C3—C4—C5170.75 (16)O1—C10—C21—C22−58.1 (4)
C2—C3—C4—C552.9 (2)C26—C21—C22—C231.1 (4)
O4—C4—C5—O5−52.7 (2)C10—C21—C22—C23−178.3 (3)
C3—C4—C5—O568.4 (2)C21—C22—C23—C240.2 (5)
O4—C4—C5—C6−172.71 (18)C22—C23—C24—C25−0.5 (5)
C3—C4—C5—C6−51.6 (2)C23—C24—C25—C26−0.4 (5)
C2—O2—C6—C5−62.4 (2)C24—C25—C26—C211.7 (5)
O5—C5—C6—O2−66.5 (2)C22—C21—C26—C25−2.0 (4)
C4—C5—C6—O255.3 (2)C10—C21—C26—C25177.3 (3)
D—H···AD—HH···AD···AD—H···A
O4—H4···O5i0.841.952.789 (2)175
O5—H5···O2i0.841.982.812 (2)169
C1—H1A···O30.992.502.893 (3)103
C6—H6B···O5ii0.992.543.461 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O5i0.841.952.789 (2)175
O5—H5⋯O2i0.841.982.812 (2)169
C6—H6B⋯O5ii0.992.543.461 (3)155

Symmetry codes: (i) ; (ii) .

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