Literature DB >> 21837026

Benzene-1,3,5-tricarb-oxy-lic acid-5-(pyridin-1-ium-3-yl)-5H-1,2,3,4-tetra-zol-5-ide (1/1).

Gao-Xiang Meng1, Hao Ding, Ya-Min Feng, Jian-Hui Zhu, He-Lin Yang.   

Abstract

The asymmetric unit of the title compound, C(6)H(5)N(5C(9)H(6)O(6), comprises a full mol-ecule each of neutral trimesic acid (tma) and zwitterionic 5-(pyridin-1-ium-3-yl)-5H-1,2,3,4-tetra-zol-5-ide (ptz). The components are linked into a two-dimensional layer by a combination of O-H⋯O, O-H⋯N, N-H⋯O and N-H⋯N hydrogen bonds parallel to the (10[Formula: see text]) plane. Layers comprising alternating rows of tma and ptz are linked into a three-dimensional network by C-H⋯O and π-π inter-actions between tma and tetra-zolate rings [centroid-centroid distance = 3.763 (2) Å], and between pyridinium and tetra-zolate rings [centroid-centroid distance = 3.745 (2) Å].

Entities:  

Year:  2011        PMID: 21837026      PMCID: PMC3151784          DOI: 10.1107/S1600536811021490

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal engineering studies involving the components of the title compound, see: Lin et al. (2005 ▶); Luo et al. (2005 ▶); Yang et al. (2011 ▶).

Experimental

Crystal data

C6H5N5·C9H6O6 M = 357.29 Triclinic, a = 7.6596 (8) Å b = 8.7374 (9) Å c = 11.3931 (11) Å α = 94.336 (2)° β = 95.584 (1)° γ = 98.465 (2)° V = 747.46 (13) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 298 K 0.16 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.970, T max = 0.988 7554 measured reflections 2770 independent reflections 2438 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.139 S = 1.24 2770 reflections 248 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021490/tk2753sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021490/tk2753Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811021490/tk2753Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H5N5·C9H6O6Z = 2
Mr = 357.29F(000) = 368
Triclinic, P1Dx = 1.587 Mg m3
Hall symbol: -p 1Mo Kα radiation, λ = 0.71073 Å
a = 7.6596 (8) ÅCell parameters from 2432 reflections
b = 8.7374 (9) Åθ = 2.4–28.3°
c = 11.3931 (11) ŵ = 0.13 mm1
α = 94.336 (2)°T = 298 K
β = 95.584 (1)°Block, colourless
γ = 98.465 (2)°0.16 × 0.12 × 0.10 mm
V = 747.46 (13) Å3
Bruker SMART APEX CCD area-detector diffractometer2770 independent reflections
Radiation source: fine focus sealed Siemens Mo tube2438 reflections with I > 2σ(I)
graphiteRint = 0.028
0.3° wide ω exposures scansθmax = 25.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −9→9
Tmin = 0.970, Tmax = 0.988k = −10→10
7554 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.068H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.139w = 1/[σ2(Fo2) + (0.041P)2 + 0.5688P] where P = (Fo2 + 2Fc2)/3
S = 1.24(Δ/σ)max = 0.005
2770 reflectionsΔρmax = 0.24 e Å3
248 parametersΔρmin = −0.29 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0853 (4)0.4773 (3)0.3543 (2)0.0287 (6)
C20.1850 (4)0.6185 (3)0.3963 (3)0.0380 (7)
H20.29410.62260.44100.046*
C3−0.0294 (5)0.7514 (3)0.3090 (3)0.0442 (8)
H3−0.06630.84580.29510.053*
C4−0.1328 (4)0.6155 (4)0.2643 (3)0.0438 (8)
H4−0.24060.61580.21900.053*
C5−0.0751 (4)0.4771 (3)0.2873 (3)0.0378 (7)
H5−0.14450.38330.25750.045*
C60.1461 (4)0.3330 (3)0.3868 (2)0.0271 (6)
C70.6435 (4)0.6942 (3)0.8877 (2)0.0287 (6)
C80.5465 (4)0.7376 (3)0.7906 (3)0.0306 (6)
H80.48580.66220.73310.037*
C90.5391 (4)0.8940 (3)0.7785 (2)0.0283 (6)
C100.6274 (4)1.0065 (3)0.8654 (2)0.0287 (6)
H100.62341.11110.85710.034*
C110.7210 (4)0.9634 (3)0.9639 (2)0.0277 (6)
C120.7303 (4)0.8069 (3)0.9750 (2)0.0301 (6)
H120.79470.77791.04090.036*
C130.6573 (4)0.5263 (3)0.8965 (2)0.0324 (7)
C140.4369 (4)0.9377 (3)0.6711 (2)0.0313 (7)
C150.8122 (4)1.0852 (3)1.0584 (2)0.0295 (6)
N10.1243 (4)0.7486 (3)0.3726 (3)0.0456 (7)
H10.183 (5)0.841 (4)0.401 (3)0.055*
N20.2717 (3)0.3285 (3)0.4749 (2)0.0366 (6)
N30.2783 (3)0.1772 (3)0.4792 (2)0.0364 (6)
N40.1635 (3)0.0944 (3)0.3974 (2)0.0342 (6)
N50.0770 (3)0.1911 (2)0.3364 (2)0.0316 (6)
O10.7675 (4)0.5045 (3)0.9864 (2)0.0643 (8)
H1A0.779 (6)0.412 (5)0.993 (4)0.096*
O20.5762 (4)0.4234 (3)0.8289 (2)0.0646 (8)
O30.3320 (3)0.8463 (2)0.60580 (18)0.0423 (6)
O40.4766 (3)1.0861 (2)0.6547 (2)0.0474 (6)
H4A0.406 (5)1.104 (4)0.589 (4)0.071*
O50.8228 (3)1.2228 (2)1.04881 (19)0.0470 (6)
O60.8802 (3)1.0282 (2)1.15213 (18)0.0409 (6)
H6A0.944 (5)1.106 (4)1.214 (3)0.061*
U11U22U33U12U13U23
C10.0376 (16)0.0218 (14)0.0248 (14)0.0026 (12)−0.0011 (12)0.0003 (11)
C20.0460 (19)0.0257 (15)0.0389 (17)0.0041 (13)−0.0080 (14)0.0004 (13)
C30.064 (2)0.0238 (16)0.0460 (19)0.0112 (15)0.0001 (17)0.0118 (14)
C40.051 (2)0.0391 (18)0.0425 (19)0.0149 (15)−0.0078 (15)0.0090 (14)
C50.0473 (18)0.0262 (15)0.0363 (17)0.0028 (13)−0.0066 (14)−0.0003 (12)
C60.0311 (15)0.0237 (14)0.0254 (14)0.0029 (11)−0.0004 (12)0.0026 (11)
C70.0331 (15)0.0231 (14)0.0302 (15)0.0049 (11)0.0026 (12)0.0055 (11)
C80.0295 (15)0.0293 (15)0.0315 (15)0.0017 (12)−0.0008 (12)0.0047 (12)
C90.0288 (15)0.0288 (14)0.0285 (15)0.0074 (12)0.0039 (12)0.0033 (12)
C100.0353 (16)0.0227 (14)0.0284 (15)0.0068 (11)0.0000 (12)0.0056 (11)
C110.0301 (15)0.0266 (14)0.0267 (15)0.0071 (11)0.0005 (12)0.0035 (11)
C120.0362 (16)0.0271 (14)0.0277 (15)0.0085 (12)−0.0034 (12)0.0086 (11)
C130.0412 (17)0.0260 (15)0.0293 (16)0.0048 (13)−0.0011 (13)0.0047 (12)
C140.0341 (16)0.0288 (15)0.0305 (16)0.0064 (12)−0.0008 (13)0.0038 (12)
C150.0353 (16)0.0260 (15)0.0268 (15)0.0077 (12)−0.0034 (12)0.0026 (11)
N10.0549 (18)0.0200 (13)0.0564 (18)−0.0011 (12)−0.0101 (14)0.0019 (12)
N20.0457 (15)0.0275 (13)0.0339 (14)0.0054 (11)−0.0084 (12)0.0032 (10)
N30.0462 (15)0.0286 (13)0.0332 (14)0.0087 (11)−0.0061 (12)0.0039 (11)
N40.0411 (14)0.0240 (12)0.0374 (14)0.0079 (11)−0.0017 (11)0.0039 (10)
N50.0410 (14)0.0228 (12)0.0294 (13)0.0063 (10)−0.0063 (11)0.0030 (10)
O10.105 (2)0.0261 (12)0.0554 (16)0.0204 (13)−0.0349 (15)0.0024 (11)
O20.0873 (19)0.0271 (12)0.0693 (17)0.0070 (12)−0.0330 (15)−0.0036 (11)
O30.0476 (13)0.0375 (12)0.0355 (12)0.0017 (10)−0.0160 (10)−0.0008 (9)
O40.0598 (15)0.0344 (12)0.0418 (13)0.0045 (10)−0.0263 (11)0.0105 (10)
O50.0709 (16)0.0194 (11)0.0467 (14)0.0101 (10)−0.0186 (11)0.0025 (9)
O60.0589 (14)0.0245 (11)0.0344 (12)0.0056 (10)−0.0194 (10)0.0040 (9)
C1—C21.377 (4)C9—C141.493 (4)
C1—C51.382 (4)C10—C111.379 (4)
C1—C61.468 (4)C10—H100.9300
C2—N11.326 (4)C11—C121.394 (4)
C2—H20.9300C11—C151.497 (4)
C3—N11.325 (4)C12—H120.9300
C3—C41.360 (4)C13—O21.193 (3)
C3—H30.9300C13—O11.307 (4)
C4—C51.382 (4)C14—O31.201 (3)
C4—H40.9300C14—O41.319 (3)
C5—H50.9300C15—O51.207 (3)
C6—N21.328 (3)C15—O61.307 (3)
C6—N51.337 (3)N1—H10.88 (4)
C7—C81.381 (4)N2—N31.335 (3)
C7—C121.390 (4)N3—N41.310 (3)
C7—C131.496 (4)N4—N51.341 (3)
C8—C91.392 (4)O1—H1A0.83 (5)
C8—H80.9300O4—H4A0.92 (4)
C9—C101.390 (4)O6—H6A0.98 (4)
C2—C1—C5118.1 (3)C11—C10—H10120.0
C2—C1—C6119.8 (3)C9—C10—H10120.0
C5—C1—C6122.0 (2)C10—C11—C12119.9 (2)
N1—C2—C1119.6 (3)C10—C11—C15119.7 (2)
N1—C2—H2120.2C12—C11—C15120.3 (2)
C1—C2—H2120.2C7—C12—C11120.1 (2)
N1—C3—C4119.7 (3)C7—C12—H12120.0
N1—C3—H3120.2C11—C12—H12120.0
C4—C3—H3120.2O2—C13—O1123.6 (3)
C3—C4—C5118.8 (3)O2—C13—C7123.7 (3)
C3—C4—H4120.6O1—C13—C7112.6 (2)
C5—C4—H4120.6O3—C14—O4123.9 (3)
C1—C5—C4120.4 (3)O3—C14—C9123.2 (3)
C1—C5—H5119.8O4—C14—C9112.9 (2)
C4—C5—H5119.8O5—C15—O6123.2 (3)
N2—C6—N5112.1 (2)O5—C15—C11123.3 (2)
N2—C6—C1123.2 (2)O6—C15—C11113.5 (2)
N5—C6—C1124.6 (2)C3—N1—C2123.4 (3)
C8—C7—C12119.8 (2)C3—N1—H1115 (2)
C8—C7—C13119.6 (2)C2—N1—H1122 (2)
C12—C7—C13120.7 (2)C6—N2—N3104.0 (2)
C7—C8—C9120.2 (3)N4—N3—N2110.7 (2)
C7—C8—H8119.9N3—N4—N5108.6 (2)
C9—C8—H8119.9C6—N5—N4104.6 (2)
C10—C9—C8119.9 (3)C13—O1—H1A115 (3)
C10—C9—C14121.1 (2)C14—O4—H4A107 (2)
C8—C9—C14119.0 (2)C15—O6—H6A115 (2)
C11—C10—C9120.1 (2)
C5—C1—C2—N10.7 (4)C8—C7—C13—O2−6.8 (5)
C6—C1—C2—N1−176.0 (3)C12—C7—C13—O2174.6 (3)
N1—C3—C4—C50.5 (5)C8—C7—C13—O1173.4 (3)
C2—C1—C5—C4−0.4 (5)C12—C7—C13—O1−5.2 (4)
C6—C1—C5—C4176.2 (3)C10—C9—C14—O3−165.2 (3)
C3—C4—C5—C1−0.2 (5)C8—C9—C14—O315.3 (4)
C2—C1—C6—N215.2 (4)C10—C9—C14—O416.0 (4)
C5—C1—C6—N2−161.3 (3)C8—C9—C14—O4−163.6 (3)
C2—C1—C6—N5−168.4 (3)C10—C11—C15—O5−7.1 (4)
C5—C1—C6—N515.1 (4)C12—C11—C15—O5172.9 (3)
C12—C7—C8—C91.6 (4)C10—C11—C15—O6173.3 (3)
C13—C7—C8—C9−177.0 (3)C12—C11—C15—O6−6.7 (4)
C7—C8—C9—C10−1.0 (4)C4—C3—N1—C2−0.3 (5)
C7—C8—C9—C14178.5 (3)C1—C2—N1—C3−0.4 (5)
C8—C9—C10—C11−0.5 (4)N5—C6—N2—N3−0.6 (3)
C14—C9—C10—C11180.0 (3)C1—C6—N2—N3176.2 (3)
C9—C10—C11—C121.4 (4)C6—N2—N3—N40.4 (3)
C9—C10—C11—C15−178.6 (3)N2—N3—N4—N5−0.1 (3)
C8—C7—C12—C11−0.7 (4)N2—C6—N5—N40.6 (3)
C13—C7—C12—C11178.0 (3)C1—C6—N5—N4−176.2 (3)
C10—C11—C12—C7−0.8 (4)N3—N4—N5—C6−0.3 (3)
C15—C11—C12—C7179.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···N4i0.88 (4)2.25 (4)2.981 (3)141 (3)
N1—H1···O30.88 (4)2.49 (3)2.958 (3)114 (3)
O1—H1A···O5ii0.83 (5)1.88 (5)2.694 (3)165 (5)
O4—H4A···N3i0.92 (4)1.73 (4)2.635 (3)168 (4)
O6—H6A···N4iii0.98 (4)2.57 (4)3.325 (3)134 (3)
O6—H6A···N5iii0.98 (4)1.70 (4)2.647 (3)163 (3)
C3—H3···O6iv0.932.413.230 (3)147.
C4—H4···O2v0.932.543.418 (4)157.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N4i0.88 (4)2.25 (4)2.981 (3)141 (3)
N1—H1⋯O30.88 (4)2.49 (3)2.958 (3)114 (3)
O1—H1A⋯O5ii0.83 (5)1.88 (5)2.694 (3)165 (5)
O4—H4A⋯N3i0.92 (4)1.73 (4)2.635 (3)168 (4)
O6—H6A⋯N4iii0.98 (4)2.57 (4)3.325 (3)134 (3)
O6—H6A⋯N5iii0.98 (4)1.70 (4)2.647 (3)163 (3)
C3—H3⋯O6iv0.932.413.230 (3)147
C4—H4⋯O2v0.932.543.418 (4)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  Crystal engineering: toward intersecting channels from a neutral network with a bcu-type topology.

Authors:  Tzuoo-Tsair Luo; Hui-Lien Tsai; Shang-Li Yang; Yen-Hsiang Liu; R Dayal Yadav; Chan-Cheng Su; Chuen-Her Ueng; Lee-Gin Lin; Kuang-Lieh Lu
Journal:  Angew Chem Int Ed Engl       Date:  2005-09-19       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and structures of 5-(pyridyl)tetrazole complexes of Mn(II).

Authors:  Ping Lin; William Clegg; Ross W Harrington; Richard A Henderson
Journal:  Dalton Trans       Date:  2005-06-13       Impact factor: 4.390

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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