Literature DB >> 21837014

2-(4-Fluoro-phen-yl)-3-methyl-1H-indole.

David B Cordes1, Guoxiong Hua, Alexandra M Z Slawin, J Derek Woollins.   

Abstract

The indole N-H hydrogen in the title compound, C(15)H(12)FN, does not display classical hydrogen bonding. Rather it forms an interaction with the π system of an adjacent indole, resulting in weakly inter-acting chains along the [001] direction.

Entities:  

Year:  2011        PMID: 21837014      PMCID: PMC3151858          DOI: 10.1107/S1600536811021325

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound has previously been prepared by Buu-Hoi & Jacquignon (1949 ▶) and by Kraus & Guo (2009 ▶). For the synthesis of the starting material, 4-fluoro-N-(2-oxo-2-phenyl­eth­yl)benzamide, see: Moriya et al. (1986 ▶). There are no structures of closely related compounds in the literature. For some similar compounds, see: Schmelter et al. (1973 ▶); Konno et al. (2004 ▶); Kumar & Liu (2006 ▶).

Experimental

Crystal data

C15H12FN M = 225.26 Monoclinic, a = 7.790 (3) Å b = 17.125 (6) Å c = 8.811 (4) Å β = 110.274 (9)° V = 1102.7 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 93 K 0.25 × 0.20 × 0.15 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2010 ▶) T min = 0.706, T max = 1.000 7380 measured reflections 2361 independent reflections 1703 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.195 S = 1.07 2361 reflections 160 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Rigaku, 2010 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021325/si2359sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021325/si2359Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811021325/si2359Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12FNF(000) = 472
Mr = 225.26Dx = 1.357 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3217 reflections
a = 7.790 (3) Åθ = 2.4–28.3°
b = 17.125 (6) ŵ = 0.09 mm1
c = 8.811 (4) ÅT = 93 K
β = 110.274 (9)°Platelet, colorless
V = 1102.7 (8) Å30.25 × 0.20 × 0.15 mm
Z = 4
Rigaku Mercury CCD diffractometer2361 independent reflections
Radiation source: rotating anode1703 reflections with I > 2σ(I)
confocalRint = 0.049
Detector resolution: 14.7059 pixels mm-1θmax = 28.7°, θmin = 2.4°
ω and φ scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2010)k = −16→23
Tmin = 0.706, Tmax = 1.000l = −11→10
7380 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.065H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.195w = 1/[σ2(Fo2) + (0.1147P)2] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2361 reflectionsΔρmax = 0.31 e Å3
160 parametersΔρmin = −0.21 e Å3
1 restraintExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.052 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. A distance restraint was applied to the N—H bond.
xyzUiso*/Ueq
F10.44463 (18)0.36586 (7)0.14270 (16)0.0629 (5)
N1−0.1358 (2)0.33607 (9)0.5104 (2)0.0416 (5)
H1−0.190 (3)0.3064 (13)0.416 (2)0.070 (7)*
C10.0281 (2)0.37720 (10)0.5467 (2)0.0373 (5)
C20.0708 (2)0.41011 (10)0.6983 (2)0.0392 (5)
C3−0.0707 (2)0.38743 (10)0.7584 (2)0.0386 (5)
C4−0.1007 (3)0.40028 (10)0.9045 (2)0.0427 (5)
H4−0.01640.43050.98780.051*
C5−0.2529 (3)0.36883 (11)0.9262 (2)0.0456 (5)
H5−0.27250.37671.02560.055*
C6−0.3796 (3)0.32527 (11)0.8028 (2)0.0470 (5)
H6−0.48540.30530.81950.056*
C7−0.3545 (2)0.31077 (11)0.6581 (2)0.0445 (5)
H7−0.44040.28090.57540.053*
C8−0.1987 (2)0.34150 (10)0.6377 (2)0.0392 (5)
C90.2314 (3)0.46041 (11)0.7870 (2)0.0466 (5)
H9A0.33950.44210.76480.070*
H9B0.25450.45740.90340.070*
H9C0.20520.51460.75070.070*
C100.1309 (2)0.37612 (10)0.4355 (2)0.0379 (5)
C110.1282 (2)0.30989 (11)0.3413 (2)0.0420 (5)
H110.05430.26650.34620.050*
C120.2309 (2)0.30642 (11)0.2413 (2)0.0456 (5)
H120.22740.26160.17660.055*
C130.3388 (3)0.36986 (12)0.2380 (2)0.0459 (5)
C140.3432 (3)0.43669 (11)0.3255 (2)0.0446 (5)
H140.41660.47990.31880.054*
C150.2382 (2)0.43944 (10)0.4235 (2)0.0415 (5)
H150.23900.48540.48400.050*
U11U22U33U12U13U23
F10.0641 (9)0.0696 (9)0.0655 (9)0.0056 (7)0.0357 (7)0.0017 (7)
N10.0344 (9)0.0434 (9)0.0440 (10)−0.0072 (6)0.0099 (7)−0.0019 (8)
C10.0319 (9)0.0299 (8)0.0474 (11)−0.0007 (7)0.0101 (8)0.0018 (8)
C20.0325 (9)0.0340 (10)0.0482 (11)0.0003 (7)0.0104 (8)0.0014 (8)
C30.0349 (9)0.0319 (9)0.0461 (11)0.0048 (7)0.0104 (8)0.0052 (8)
C40.0434 (11)0.0340 (10)0.0484 (12)0.0027 (8)0.0128 (9)0.0020 (9)
C50.0476 (12)0.0420 (11)0.0487 (12)0.0023 (8)0.0183 (10)0.0052 (9)
C60.0396 (11)0.0448 (11)0.0579 (13)0.0000 (8)0.0187 (9)0.0100 (10)
C70.0363 (10)0.0451 (11)0.0479 (12)−0.0021 (8)0.0093 (9)0.0062 (9)
C80.0322 (9)0.0367 (10)0.0453 (11)0.0011 (7)0.0091 (8)0.0038 (9)
C90.0388 (10)0.0448 (11)0.0523 (12)−0.0058 (8)0.0107 (9)−0.0037 (10)
C100.0315 (9)0.0369 (10)0.0412 (11)0.0024 (7)0.0071 (8)0.0024 (8)
C110.0378 (10)0.0382 (10)0.0450 (11)−0.0014 (7)0.0080 (8)0.0001 (9)
C120.0424 (11)0.0450 (12)0.0444 (12)0.0038 (8)0.0085 (9)−0.0039 (9)
C130.0397 (11)0.0548 (12)0.0440 (11)0.0073 (9)0.0156 (9)0.0043 (10)
C140.0371 (10)0.0420 (11)0.0533 (12)0.0007 (8)0.0139 (9)0.0079 (9)
C150.0353 (10)0.0356 (10)0.0504 (11)0.0021 (7)0.0106 (8)0.0006 (9)
F1—C131.367 (2)C7—C81.391 (3)
N1—C81.374 (2)C7—H70.9500
N1—C11.395 (2)C9—H9A0.9800
N1—H10.944 (16)C9—H9B0.9800
C1—C21.380 (3)C9—H9C0.9800
C1—C101.465 (3)C10—C151.395 (3)
C2—C31.432 (2)C10—C111.402 (3)
C2—C91.497 (3)C11—C121.382 (3)
C3—C41.403 (3)C11—H110.9500
C3—C81.417 (3)C12—C131.380 (3)
C4—C51.375 (3)C12—H120.9500
C4—H40.9500C13—C141.374 (3)
C5—C61.403 (3)C14—C151.381 (3)
C5—H50.9500C14—H140.9500
C6—C71.378 (3)C15—H150.9500
C6—H60.9500
C8—N1—C1109.61 (16)C7—C8—C3122.10 (18)
C8—N1—H1125.6 (14)C2—C9—H9A109.5
C1—N1—H1124.7 (14)C2—C9—H9B109.5
C2—C1—N1108.81 (16)H9A—C9—H9B109.5
C2—C1—C10130.42 (16)C2—C9—H9C109.5
N1—C1—C10120.63 (17)H9A—C9—H9C109.5
C1—C2—C3106.81 (16)H9B—C9—H9C109.5
C1—C2—C9128.14 (17)C15—C10—C11118.04 (17)
C3—C2—C9125.05 (17)C15—C10—C1121.45 (16)
C4—C3—C8118.57 (17)C11—C10—C1120.48 (16)
C4—C3—C2133.71 (18)C12—C11—C10121.30 (17)
C8—C3—C2107.71 (17)C12—C11—H11119.3
C5—C4—C3119.44 (18)C10—C11—H11119.3
C5—C4—H4120.3C13—C12—C11118.10 (18)
C3—C4—H4120.3C13—C12—H12120.9
C4—C5—C6120.67 (18)C11—C12—H12120.9
C4—C5—H5119.7F1—C13—C14118.92 (17)
C6—C5—H5119.7F1—C13—C12118.33 (17)
C7—C6—C5121.69 (18)C14—C13—C12122.75 (19)
C7—C6—H6119.2C13—C14—C15118.33 (18)
C5—C6—H6119.2C13—C14—H14120.8
C6—C7—C8117.49 (18)C15—C14—H14120.8
C6—C7—H7121.3C14—C15—C10121.43 (18)
C8—C7—H7121.3C14—C15—H15119.3
N1—C8—C7130.84 (17)C10—C15—H15119.3
N1—C8—C3107.05 (16)
C8—N1—C1—C2−0.5 (2)C4—C3—C8—N1−178.33 (15)
C8—N1—C1—C10175.64 (15)C2—C3—C8—N10.56 (19)
N1—C1—C2—C30.9 (2)C4—C3—C8—C71.7 (3)
C10—C1—C2—C3−174.81 (17)C2—C3—C8—C7−179.37 (16)
N1—C1—C2—C9−178.84 (17)C2—C1—C10—C15−35.0 (3)
C10—C1—C2—C95.5 (3)N1—C1—C10—C15149.74 (17)
C1—C2—C3—C4177.78 (19)C2—C1—C10—C11143.0 (2)
C9—C2—C3—C4−2.5 (3)N1—C1—C10—C11−32.2 (2)
C1—C2—C3—C8−0.9 (2)C15—C10—C11—C121.1 (3)
C9—C2—C3—C8178.83 (16)C1—C10—C11—C12−176.98 (16)
C8—C3—C4—C5−0.6 (3)C10—C11—C12—C130.8 (3)
C2—C3—C4—C5−179.09 (18)C11—C12—C13—F1178.20 (17)
C3—C4—C5—C6−1.1 (3)C11—C12—C13—C14−2.2 (3)
C4—C5—C6—C71.6 (3)F1—C13—C14—C15−178.86 (16)
C5—C6—C7—C8−0.5 (3)C12—C13—C14—C151.5 (3)
C1—N1—C8—C7179.89 (19)C13—C14—C15—C100.5 (3)
C1—N1—C8—C30.0 (2)C11—C10—C15—C14−1.8 (3)
C6—C7—C8—N1178.87 (18)C1—C10—C15—C14176.27 (17)
C6—C7—C8—C3−1.2 (3)
Cg is the centroid of the C3–C8 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···Cgi0.94 (2)2.99 (2)3.791 (2)143.(2)
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C3–C8 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯Cgi0.94 (2)2.99 (2)3.791 (2)143 (2)

Symmetry code: (i) .

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