| Literature DB >> 21837014 |
David B Cordes1, Guoxiong Hua, Alexandra M Z Slawin, J Derek Woollins.
Abstract
The indole N-H hydrogen in the title compound, C(15)H(12)FN, does not display classical hydrogen bonding. Rather it forms an interaction with the π system of an adjacent indole, resulting in weakly inter-acting chains along the [001] direction.Entities:
Year: 2011 PMID: 21837014 PMCID: PMC3151858 DOI: 10.1107/S1600536811021325
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H12FN | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3217 reflections |
| θ = 2.4–28.3° | |
| µ = 0.09 mm−1 | |
| β = 110.274 (9)° | Platelet, colorless |
| 0.25 × 0.20 × 0.15 mm | |
| Rigaku Mercury CCD diffractometer | 2361 independent reflections |
| Radiation source: rotating anode | 1703 reflections with |
| confocal | |
| Detector resolution: 14.7059 pixels mm-1 | θmax = 28.7°, θmin = 2.4° |
| ω and φ scans | |
| Absorption correction: multi-scan ( | |
| 7380 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2361 reflections | Δρmax = 0.31 e Å−3 |
| 160 parameters | Δρmin = −0.21 e Å−3 |
| 1 restraint | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.052 (13) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | 0.44463 (18) | 0.36586 (7) | 0.14270 (16) | 0.0629 (5) | |
| N1 | −0.1358 (2) | 0.33607 (9) | 0.5104 (2) | 0.0416 (5) | |
| H1 | −0.190 (3) | 0.3064 (13) | 0.416 (2) | 0.070 (7)* | |
| C1 | 0.0281 (2) | 0.37720 (10) | 0.5467 (2) | 0.0373 (5) | |
| C2 | 0.0708 (2) | 0.41011 (10) | 0.6983 (2) | 0.0392 (5) | |
| C3 | −0.0707 (2) | 0.38743 (10) | 0.7584 (2) | 0.0386 (5) | |
| C4 | −0.1007 (3) | 0.40028 (10) | 0.9045 (2) | 0.0427 (5) | |
| H4 | −0.0164 | 0.4305 | 0.9878 | 0.051* | |
| C5 | −0.2529 (3) | 0.36883 (11) | 0.9262 (2) | 0.0456 (5) | |
| H5 | −0.2725 | 0.3767 | 1.0256 | 0.055* | |
| C6 | −0.3796 (3) | 0.32527 (11) | 0.8028 (2) | 0.0470 (5) | |
| H6 | −0.4854 | 0.3053 | 0.8195 | 0.056* | |
| C7 | −0.3545 (2) | 0.31077 (11) | 0.6581 (2) | 0.0445 (5) | |
| H7 | −0.4404 | 0.2809 | 0.5754 | 0.053* | |
| C8 | −0.1987 (2) | 0.34150 (10) | 0.6377 (2) | 0.0392 (5) | |
| C9 | 0.2314 (3) | 0.46041 (11) | 0.7870 (2) | 0.0466 (5) | |
| H9A | 0.3395 | 0.4421 | 0.7648 | 0.070* | |
| H9B | 0.2545 | 0.4574 | 0.9034 | 0.070* | |
| H9C | 0.2052 | 0.5146 | 0.7507 | 0.070* | |
| C10 | 0.1309 (2) | 0.37612 (10) | 0.4355 (2) | 0.0379 (5) | |
| C11 | 0.1282 (2) | 0.30989 (11) | 0.3413 (2) | 0.0420 (5) | |
| H11 | 0.0543 | 0.2665 | 0.3462 | 0.050* | |
| C12 | 0.2309 (2) | 0.30642 (11) | 0.2413 (2) | 0.0456 (5) | |
| H12 | 0.2274 | 0.2616 | 0.1766 | 0.055* | |
| C13 | 0.3388 (3) | 0.36986 (12) | 0.2380 (2) | 0.0459 (5) | |
| C14 | 0.3432 (3) | 0.43669 (11) | 0.3255 (2) | 0.0446 (5) | |
| H14 | 0.4166 | 0.4799 | 0.3188 | 0.054* | |
| C15 | 0.2382 (2) | 0.43944 (10) | 0.4235 (2) | 0.0415 (5) | |
| H15 | 0.2390 | 0.4854 | 0.4840 | 0.050* |
| F1 | 0.0641 (9) | 0.0696 (9) | 0.0655 (9) | 0.0056 (7) | 0.0357 (7) | 0.0017 (7) |
| N1 | 0.0344 (9) | 0.0434 (9) | 0.0440 (10) | −0.0072 (6) | 0.0099 (7) | −0.0019 (8) |
| C1 | 0.0319 (9) | 0.0299 (8) | 0.0474 (11) | −0.0007 (7) | 0.0101 (8) | 0.0018 (8) |
| C2 | 0.0325 (9) | 0.0340 (10) | 0.0482 (11) | 0.0003 (7) | 0.0104 (8) | 0.0014 (8) |
| C3 | 0.0349 (9) | 0.0319 (9) | 0.0461 (11) | 0.0048 (7) | 0.0104 (8) | 0.0052 (8) |
| C4 | 0.0434 (11) | 0.0340 (10) | 0.0484 (12) | 0.0027 (8) | 0.0128 (9) | 0.0020 (9) |
| C5 | 0.0476 (12) | 0.0420 (11) | 0.0487 (12) | 0.0023 (8) | 0.0183 (10) | 0.0052 (9) |
| C6 | 0.0396 (11) | 0.0448 (11) | 0.0579 (13) | 0.0000 (8) | 0.0187 (9) | 0.0100 (10) |
| C7 | 0.0363 (10) | 0.0451 (11) | 0.0479 (12) | −0.0021 (8) | 0.0093 (9) | 0.0062 (9) |
| C8 | 0.0322 (9) | 0.0367 (10) | 0.0453 (11) | 0.0011 (7) | 0.0091 (8) | 0.0038 (9) |
| C9 | 0.0388 (10) | 0.0448 (11) | 0.0523 (12) | −0.0058 (8) | 0.0107 (9) | −0.0037 (10) |
| C10 | 0.0315 (9) | 0.0369 (10) | 0.0412 (11) | 0.0024 (7) | 0.0071 (8) | 0.0024 (8) |
| C11 | 0.0378 (10) | 0.0382 (10) | 0.0450 (11) | −0.0014 (7) | 0.0080 (8) | 0.0001 (9) |
| C12 | 0.0424 (11) | 0.0450 (12) | 0.0444 (12) | 0.0038 (8) | 0.0085 (9) | −0.0039 (9) |
| C13 | 0.0397 (11) | 0.0548 (12) | 0.0440 (11) | 0.0073 (9) | 0.0156 (9) | 0.0043 (10) |
| C14 | 0.0371 (10) | 0.0420 (11) | 0.0533 (12) | 0.0007 (8) | 0.0139 (9) | 0.0079 (9) |
| C15 | 0.0353 (10) | 0.0356 (10) | 0.0504 (11) | 0.0021 (7) | 0.0106 (8) | 0.0006 (9) |
| F1—C13 | 1.367 (2) | C7—C8 | 1.391 (3) |
| N1—C8 | 1.374 (2) | C7—H7 | 0.9500 |
| N1—C1 | 1.395 (2) | C9—H9A | 0.9800 |
| N1—H1 | 0.944 (16) | C9—H9B | 0.9800 |
| C1—C2 | 1.380 (3) | C9—H9C | 0.9800 |
| C1—C10 | 1.465 (3) | C10—C15 | 1.395 (3) |
| C2—C3 | 1.432 (2) | C10—C11 | 1.402 (3) |
| C2—C9 | 1.497 (3) | C11—C12 | 1.382 (3) |
| C3—C4 | 1.403 (3) | C11—H11 | 0.9500 |
| C3—C8 | 1.417 (3) | C12—C13 | 1.380 (3) |
| C4—C5 | 1.375 (3) | C12—H12 | 0.9500 |
| C4—H4 | 0.9500 | C13—C14 | 1.374 (3) |
| C5—C6 | 1.403 (3) | C14—C15 | 1.381 (3) |
| C5—H5 | 0.9500 | C14—H14 | 0.9500 |
| C6—C7 | 1.378 (3) | C15—H15 | 0.9500 |
| C6—H6 | 0.9500 | ||
| C8—N1—C1 | 109.61 (16) | C7—C8—C3 | 122.10 (18) |
| C8—N1—H1 | 125.6 (14) | C2—C9—H9A | 109.5 |
| C1—N1—H1 | 124.7 (14) | C2—C9—H9B | 109.5 |
| C2—C1—N1 | 108.81 (16) | H9A—C9—H9B | 109.5 |
| C2—C1—C10 | 130.42 (16) | C2—C9—H9C | 109.5 |
| N1—C1—C10 | 120.63 (17) | H9A—C9—H9C | 109.5 |
| C1—C2—C3 | 106.81 (16) | H9B—C9—H9C | 109.5 |
| C1—C2—C9 | 128.14 (17) | C15—C10—C11 | 118.04 (17) |
| C3—C2—C9 | 125.05 (17) | C15—C10—C1 | 121.45 (16) |
| C4—C3—C8 | 118.57 (17) | C11—C10—C1 | 120.48 (16) |
| C4—C3—C2 | 133.71 (18) | C12—C11—C10 | 121.30 (17) |
| C8—C3—C2 | 107.71 (17) | C12—C11—H11 | 119.3 |
| C5—C4—C3 | 119.44 (18) | C10—C11—H11 | 119.3 |
| C5—C4—H4 | 120.3 | C13—C12—C11 | 118.10 (18) |
| C3—C4—H4 | 120.3 | C13—C12—H12 | 120.9 |
| C4—C5—C6 | 120.67 (18) | C11—C12—H12 | 120.9 |
| C4—C5—H5 | 119.7 | F1—C13—C14 | 118.92 (17) |
| C6—C5—H5 | 119.7 | F1—C13—C12 | 118.33 (17) |
| C7—C6—C5 | 121.69 (18) | C14—C13—C12 | 122.75 (19) |
| C7—C6—H6 | 119.2 | C13—C14—C15 | 118.33 (18) |
| C5—C6—H6 | 119.2 | C13—C14—H14 | 120.8 |
| C6—C7—C8 | 117.49 (18) | C15—C14—H14 | 120.8 |
| C6—C7—H7 | 121.3 | C14—C15—C10 | 121.43 (18) |
| C8—C7—H7 | 121.3 | C14—C15—H15 | 119.3 |
| N1—C8—C7 | 130.84 (17) | C10—C15—H15 | 119.3 |
| N1—C8—C3 | 107.05 (16) | ||
| C8—N1—C1—C2 | −0.5 (2) | C4—C3—C8—N1 | −178.33 (15) |
| C8—N1—C1—C10 | 175.64 (15) | C2—C3—C8—N1 | 0.56 (19) |
| N1—C1—C2—C3 | 0.9 (2) | C4—C3—C8—C7 | 1.7 (3) |
| C10—C1—C2—C3 | −174.81 (17) | C2—C3—C8—C7 | −179.37 (16) |
| N1—C1—C2—C9 | −178.84 (17) | C2—C1—C10—C15 | −35.0 (3) |
| C10—C1—C2—C9 | 5.5 (3) | N1—C1—C10—C15 | 149.74 (17) |
| C1—C2—C3—C4 | 177.78 (19) | C2—C1—C10—C11 | 143.0 (2) |
| C9—C2—C3—C4 | −2.5 (3) | N1—C1—C10—C11 | −32.2 (2) |
| C1—C2—C3—C8 | −0.9 (2) | C15—C10—C11—C12 | 1.1 (3) |
| C9—C2—C3—C8 | 178.83 (16) | C1—C10—C11—C12 | −176.98 (16) |
| C8—C3—C4—C5 | −0.6 (3) | C10—C11—C12—C13 | 0.8 (3) |
| C2—C3—C4—C5 | −179.09 (18) | C11—C12—C13—F1 | 178.20 (17) |
| C3—C4—C5—C6 | −1.1 (3) | C11—C12—C13—C14 | −2.2 (3) |
| C4—C5—C6—C7 | 1.6 (3) | F1—C13—C14—C15 | −178.86 (16) |
| C5—C6—C7—C8 | −0.5 (3) | C12—C13—C14—C15 | 1.5 (3) |
| C1—N1—C8—C7 | 179.89 (19) | C13—C14—C15—C10 | 0.5 (3) |
| C1—N1—C8—C3 | 0.0 (2) | C11—C10—C15—C14 | −1.8 (3) |
| C6—C7—C8—N1 | 178.87 (18) | C1—C10—C15—C14 | 176.27 (17) |
| C6—C7—C8—C3 | −1.2 (3) |
| Cg is the centroid of the C3–C8 ring. |
| H··· | ||||
| N1—H1···Cgi | 0.94 (2) | 2.99 (2) | 3.791 (2) | 143.(2) |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C3–C8 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯ | 0.94 (2) | 2.99 (2) | 3.791 (2) | 143 (2) |
Symmetry code: (i) .