Literature DB >> 21837013

2-{[{2-Hy-droxy-3-[2-methyl-5-(propan-2-yl)phen-oxy]prop-yl}(pyridin-2-ylmeth-yl)amino]-meth-yl}phenol.

Rakesh S Sancheti, Amol G Dikundwar, Ratnamala S Bendre.   

Abstract

In the title racemic compound, C(26)H(32)N(2)O(3), an intra-molecular O-H⋯N hydrogen bond is formed between the phenolic OH group and the tertiary amine N atom. Another O-H⋯N hydrogen bond that is formed between the OH group and the pyridine N atom links the mol-ecules into a polymeric chain extending along the a axis. The structure is further stabilized by intramolecular and intermolecular C-H⋯O interactions.

Entities:  

Year:  2011        PMID: 21837013      PMCID: PMC3152006          DOI: 10.1107/S1600536811020952

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Rossi et al. (2005 ▶). For related structures, see: Butcher et al. (2005 ▶, 2007 ▶). For the activities of related metal complexes, see: Ruiz et al. (2010 ▶); Yajima et al. (2002 ▶); Sarkar et al. (2006 ▶); Neves et al. (1999 ▶).

Experimental

Crystal data

C26H32N2O3 M = 420.54 Triclinic, a = 8.0940 (6) Å b = 11.3611 (7) Å c = 13.7625 (10) Å α = 79.944 (6)° β = 82.915 (6)° γ = 71.745 (6)° V = 1180.21 (15) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 120 K 0.30 × 0.30 × 0.20 mm

Data collection

Oxford Xcalibur Eos (Nova) CCD detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.977, T max = 0.985 23864 measured reflections 4083 independent reflections 3232 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.163 S = 1.06 4083 reflections 285 parameters H-atom parameters constrained Δρmax = 0.99 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and CAMERON (Watkin et al., 1993 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811020952/gk2373sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020952/gk2373Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811020952/gk2373Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H32N2O3Z = 2
Mr = 420.54F(000) = 452
Triclinic, P1Dx = 1.183 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.0940 (6) ÅCell parameters from 23864 reflections
b = 11.3611 (7) Åθ = 2.6–25.0°
c = 13.7625 (10) ŵ = 0.08 mm1
α = 79.944 (6)°T = 120 K
β = 82.915 (6)°Block, colourless
γ = 71.745 (6)°0.30 × 0.30 × 0.20 mm
V = 1180.21 (15) Å3
Oxford Xcalibur Eos (Nova) CCD detector diffractometer4083 independent reflections
Radiation source: Enhance (Mo) X-ray Source3232 reflections with I > 2σ(I)
graphiteRint = 0.063
ω scansθmax = 25.0°, θmin = 2.6°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −9→9
Tmin = 0.977, Tmax = 0.985k = −13→13
23864 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0984P)2 + 0.1634P] where P = (Fo2 + 2Fc2)/3
4083 reflections(Δ/σ)max < 0.001
285 parametersΔρmax = 0.99 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. 1H NMR (p.p.m., CDCl3): 1.20 (d, 6H, 2-CH3), 2.08 (s, 3H, –CH3), 2.84 (d, 2H, –CH2), 3.10 (m, 1H, –CH), 3.90 (m, 4H 2-CH2), 4.10(d, 2H, –CH2), 4.25 (m, 1H, –CH), 4.58 (bs, 1H, Ar—OH), 6.7 to 7.7 Ar—H. (Found: C 74.54, H 7.37, N 6.67%; Calcd. for C26H31O3N2: C 74.44, H 7.44, N 7.05%) IR (cm-l): ? (C═C) 1586, ? (C—O—C) 1151. MS (m/z): 421[M]+
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7021 (3)0.58331 (18)0.23411 (15)0.0272 (5)
H10.60490.58970.27890.033*
C20.6851 (3)0.65628 (19)0.14101 (15)0.0289 (5)
C30.8326 (3)0.6470 (2)0.07647 (15)0.0308 (5)
H3A0.82400.69560.01440.037*
C40.9931 (3)0.5658 (2)0.10358 (16)0.0317 (5)
H41.09040.56130.05910.038*
C51.0125 (3)0.49111 (18)0.19502 (16)0.0287 (5)
C60.8624 (3)0.50136 (18)0.26044 (15)0.0260 (5)
C70.5086 (3)0.7432 (2)0.11150 (16)0.0323 (5)
H70.52430.78250.04310.039*
C80.4387 (3)0.8471 (2)0.17527 (18)0.0375 (5)
H8A0.42490.81120.24320.056*
H8B0.32780.90060.15400.056*
H8C0.51910.89520.16890.056*
C90.3783 (3)0.6693 (2)0.11357 (17)0.0360 (5)
H9A0.42140.60930.06830.054*
H9B0.26780.72600.09450.054*
H9C0.36430.62660.17920.054*
C101.1857 (3)0.4025 (2)0.22438 (18)0.0381 (5)
H10A1.27310.40770.17120.057*
H10B1.17800.31850.23830.057*
H10C1.21680.42460.28230.057*
C110.7519 (3)0.43452 (19)0.42513 (16)0.0290 (5)
H11A0.64810.43020.39920.035*
H11B0.72420.51310.45110.035*
C120.8149 (3)0.32503 (19)0.50560 (16)0.0300 (5)
H120.85120.24780.47570.036*
C130.9716 (3)0.33436 (18)0.55172 (15)0.0249 (4)
H13A1.05160.35890.49950.030*
H13B0.93210.39920.59400.030*
C140.9973 (3)0.20672 (18)0.71470 (14)0.0253 (4)
H14A0.87100.23860.71830.030*
H14B1.04010.25830.74840.030*
C151.0514 (2)0.07363 (18)0.76661 (14)0.0247 (4)
C161.0327 (3)−0.02368 (19)0.72237 (15)0.0271 (5)
C171.0661 (3)−0.1443 (2)0.77277 (17)0.0345 (5)
H171.0498−0.20740.74360.041*
C181.1244 (3)−0.1707 (2)0.86749 (17)0.0392 (6)
H181.1463−0.25150.90180.047*
C191.1499 (3)−0.0776 (2)0.91064 (17)0.0404 (6)
H191.1928−0.09600.97290.048*
C201.1114 (3)0.0433 (2)0.86082 (15)0.0326 (5)
H201.12600.10610.89120.039*
C211.2544 (2)0.19811 (18)0.60307 (14)0.0239 (4)
H21A1.30810.12790.65170.029*
H21B1.27440.27220.61890.029*
C221.3400 (2)0.17410 (17)0.50250 (14)0.0227 (4)
C231.2875 (3)0.10394 (18)0.44568 (15)0.0273 (5)
H231.19550.07160.46940.033*
C241.3720 (3)0.08254 (19)0.35424 (15)0.0290 (5)
H241.33690.03680.31530.035*
C251.5104 (3)0.13057 (19)0.32132 (16)0.0298 (5)
H251.57070.11770.26020.036*
C261.5555 (3)0.19783 (19)0.38222 (15)0.0296 (5)
H261.64860.22950.36030.036*
N11.0650 (2)0.21620 (14)0.61015 (12)0.0226 (4)
N21.4744 (2)0.22078 (16)0.47087 (13)0.0275 (4)
O10.89021 (18)0.42567 (13)0.34963 (11)0.0313 (4)
O20.67674 (19)0.31938 (15)0.57718 (11)0.0354 (4)
H2O0.60560.29610.55410.053*
O30.9810 (2)−0.00092 (14)0.62858 (11)0.0341 (4)
H30.99300.06620.60080.051*
U11U22U33U12U13U23
C10.0266 (11)0.0251 (10)0.0336 (11)−0.0092 (9)−0.0063 (9)−0.0082 (9)
C20.0310 (11)0.0274 (11)0.0339 (11)−0.0117 (9)−0.0080 (9)−0.0095 (9)
C30.0360 (12)0.0321 (11)0.0292 (11)−0.0144 (10)−0.0062 (9)−0.0069 (9)
C40.0331 (12)0.0330 (12)0.0339 (12)−0.0137 (9)−0.0015 (9)−0.0118 (9)
C50.0284 (11)0.0240 (11)0.0388 (12)−0.0095 (9)−0.0058 (9)−0.0130 (9)
C60.0299 (11)0.0211 (10)0.0311 (11)−0.0110 (8)−0.0077 (9)−0.0046 (8)
C70.0294 (12)0.0343 (12)0.0348 (12)−0.0112 (9)−0.0108 (9)0.0002 (9)
C80.0324 (12)0.0311 (12)0.0490 (14)−0.0083 (10)−0.0068 (10)−0.0054 (10)
C90.0305 (12)0.0404 (13)0.0405 (13)−0.0115 (10)−0.0118 (10)−0.0067 (10)
C100.0310 (12)0.0325 (12)0.0520 (14)−0.0095 (10)−0.0037 (10)−0.0089 (10)
C110.0221 (10)0.0265 (11)0.0411 (12)−0.0101 (8)−0.0090 (9)−0.0017 (9)
C120.0243 (11)0.0282 (11)0.0400 (12)−0.0124 (9)−0.0072 (9)0.0004 (9)
C130.0250 (10)0.0218 (10)0.0299 (11)−0.0093 (8)−0.0039 (8)−0.0037 (8)
C140.0224 (10)0.0273 (11)0.0295 (11)−0.0098 (8)−0.0028 (8)−0.0080 (8)
C150.0205 (10)0.0268 (11)0.0284 (11)−0.0096 (8)0.0007 (8)−0.0051 (8)
C160.0210 (10)0.0309 (11)0.0324 (11)−0.0130 (8)0.0009 (8)−0.0049 (9)
C170.0313 (12)0.0284 (12)0.0455 (14)−0.0137 (9)0.0033 (10)−0.0056 (10)
C180.0390 (13)0.0298 (12)0.0408 (13)−0.0083 (10)0.0062 (10)0.0056 (10)
C190.0426 (14)0.0411 (14)0.0304 (12)−0.0066 (11)−0.0015 (10)0.0017 (10)
C200.0313 (12)0.0357 (12)0.0307 (11)−0.0089 (9)−0.0001 (9)−0.0079 (9)
C210.0192 (10)0.0240 (10)0.0324 (11)−0.0092 (8)−0.0057 (8)−0.0064 (8)
C220.0180 (9)0.0196 (10)0.0316 (11)−0.0063 (8)−0.0064 (8)−0.0018 (8)
C230.0221 (10)0.0275 (11)0.0375 (12)−0.0123 (8)−0.0034 (9)−0.0083 (9)
C240.0245 (10)0.0284 (11)0.0370 (12)−0.0064 (9)−0.0058 (9)−0.0131 (9)
C250.0230 (10)0.0302 (11)0.0348 (12)−0.0049 (9)−0.0009 (9)−0.0076 (9)
C260.0233 (10)0.0336 (12)0.0362 (12)−0.0141 (9)0.0013 (9)−0.0080 (9)
N10.0183 (8)0.0230 (8)0.0288 (9)−0.0082 (7)−0.0039 (7)−0.0042 (7)
N20.0230 (9)0.0280 (9)0.0362 (10)−0.0127 (7)−0.0032 (7)−0.0073 (7)
O10.0266 (8)0.0294 (8)0.0365 (8)−0.0063 (6)−0.0073 (6)−0.0015 (6)
O20.0309 (9)0.0410 (9)0.0389 (9)−0.0168 (7)−0.0047 (7)−0.0051 (7)
O30.0400 (9)0.0315 (8)0.0405 (9)−0.0206 (7)−0.0123 (7)−0.0054 (7)
C1—C61.386 (3)C13—H13B0.9700
C1—C21.396 (3)C14—N11.473 (3)
C1—H10.9300C14—C151.508 (3)
C2—C31.384 (3)C14—H14A0.9700
C2—C71.516 (3)C14—H14B0.9700
C3—C41.388 (3)C15—C201.389 (3)
C3—H3A0.9300C15—C161.407 (3)
C4—C51.386 (3)C16—O31.362 (2)
C4—H40.9300C16—C171.384 (3)
C5—C61.406 (3)C17—C181.392 (3)
C5—C101.502 (3)C17—H170.9300
C6—O11.369 (2)C18—C191.378 (3)
C7—C81.518 (3)C18—H180.9300
C7—C91.535 (3)C19—C201.382 (3)
C7—H70.9800C19—H190.9300
C8—H8A0.9600C20—H200.9300
C8—H8B0.9600C21—N11.474 (2)
C8—H8C0.9600C21—C221.499 (3)
C9—H9A0.9600C21—H21A0.9700
C9—H9B0.9600C21—H21B0.9700
C9—H9C0.9600C22—N21.348 (3)
C10—H10A0.9600C22—C231.393 (3)
C10—H10B0.9600C23—C241.379 (3)
C10—H10C0.9600C23—H230.9300
C11—O11.422 (3)C24—C251.389 (3)
C11—C121.515 (3)C24—H240.9300
C11—H11A0.9700C25—C261.376 (3)
C11—H11B0.9700C25—H250.9300
C12—O21.406 (3)C26—N21.339 (3)
C12—C131.526 (3)C26—H260.9300
C12—H120.9800O2—H2O0.8200
C13—N11.469 (2)O3—H30.8200
C13—H13A0.9700
C6—C1—C2120.7 (2)C12—C13—H13A109.0
C6—C1—H1119.7N1—C13—H13B109.0
C2—C1—H1119.7C12—C13—H13B109.0
C3—C2—C1118.5 (2)H13A—C13—H13B107.8
C3—C2—C7120.99 (19)N1—C14—C15111.99 (16)
C1—C2—C7120.52 (19)N1—C14—H14A109.2
C2—C3—C4120.6 (2)C15—C14—H14A109.2
C2—C3—H3A119.7N1—C14—H14B109.2
C4—C3—H3A119.7C15—C14—H14B109.2
C5—C4—C3121.9 (2)H14A—C14—H14B107.9
C5—C4—H4119.1C20—C15—C16117.71 (18)
C3—C4—H4119.1C20—C15—C14121.98 (18)
C4—C5—C6117.28 (19)C16—C15—C14120.21 (17)
C4—C5—C10122.1 (2)O3—C16—C17118.51 (19)
C6—C5—C10120.66 (19)O3—C16—C15120.51 (18)
O1—C6—C1124.48 (19)C17—C16—C15120.97 (19)
O1—C6—C5114.48 (18)C16—C17—C18119.5 (2)
C1—C6—C5121.04 (19)C16—C17—H17120.2
C2—C7—C8111.83 (17)C18—C17—H17120.2
C2—C7—C9110.83 (17)C19—C18—C17120.3 (2)
C8—C7—C9111.36 (19)C19—C18—H18119.8
C2—C7—H7107.5C17—C18—H18119.8
C8—C7—H7107.5C18—C19—C20119.7 (2)
C9—C7—H7107.5C18—C19—H19120.2
C7—C8—H8A109.5C20—C19—H19120.2
C7—C8—H8B109.5C19—C20—C15121.7 (2)
H8A—C8—H8B109.5C19—C20—H20119.1
C7—C8—H8C109.5C15—C20—H20119.1
H8A—C8—H8C109.5N1—C21—C22112.97 (15)
H8B—C8—H8C109.5N1—C21—H21A109.0
C7—C9—H9A109.5C22—C21—H21A109.0
C7—C9—H9B109.5N1—C21—H21B109.0
H9A—C9—H9B109.5C22—C21—H21B109.0
C7—C9—H9C109.5H21A—C21—H21B107.8
H9A—C9—H9C109.5N2—C22—C23121.50 (19)
H9B—C9—H9C109.5N2—C22—C21116.56 (16)
C5—C10—H10A109.5C23—C22—C21121.91 (17)
C5—C10—H10B109.5C24—C23—C22119.90 (19)
H10A—C10—H10B109.5C24—C23—H23120.1
C5—C10—H10C109.5C22—C23—H23120.1
H10A—C10—H10C109.5C23—C24—C25118.79 (19)
H10B—C10—H10C109.5C23—C24—H24120.6
O1—C11—C12106.52 (16)C25—C24—H24120.6
O1—C11—H11A110.4C26—C25—C24117.8 (2)
C12—C11—H11A110.4C26—C25—H25121.1
O1—C11—H11B110.4C24—C25—H25121.1
C12—C11—H11B110.4N2—C26—C25124.49 (19)
H11A—C11—H11B108.6N2—C26—H26117.8
O2—C12—C11109.42 (16)C25—C26—H26117.8
O2—C12—C13111.46 (17)C13—N1—C14112.26 (15)
C11—C12—C13111.23 (16)C13—N1—C21111.67 (15)
O2—C12—H12108.2C14—N1—C21110.08 (15)
C11—C12—H12108.2C26—N2—C22117.52 (17)
C13—C12—H12108.2C6—O1—C11119.89 (15)
N1—C13—C12112.82 (15)C12—O2—H2O109.5
N1—C13—H13A109.0C16—O3—H3109.5
C6—C1—C2—C3−1.4 (3)O3—C16—C17—C18177.95 (19)
C6—C1—C2—C7178.34 (17)C15—C16—C17—C18−2.0 (3)
C1—C2—C3—C40.7 (3)C16—C17—C18—C19−0.5 (3)
C7—C2—C3—C4−179.02 (18)C17—C18—C19—C202.3 (3)
C2—C3—C4—C50.2 (3)C18—C19—C20—C15−1.7 (3)
C3—C4—C5—C6−0.5 (3)C16—C15—C20—C19−0.7 (3)
C3—C4—C5—C10179.60 (18)C14—C15—C20—C19175.7 (2)
C2—C1—C6—O1−179.35 (17)N1—C21—C22—N2145.52 (17)
C2—C1—C6—C51.2 (3)N1—C21—C22—C23−36.4 (2)
C4—C5—C6—O1−179.73 (17)N2—C22—C23—C24−1.0 (3)
C10—C5—C6—O10.2 (3)C21—C22—C23—C24−178.94 (18)
C4—C5—C6—C1−0.2 (3)C22—C23—C24—C250.9 (3)
C10—C5—C6—C1179.71 (18)C23—C24—C25—C26−0.2 (3)
C3—C2—C7—C8−115.7 (2)C24—C25—C26—N2−0.4 (3)
C1—C2—C7—C864.5 (3)C12—C13—N1—C14−90.37 (19)
C3—C2—C7—C9119.4 (2)C12—C13—N1—C21145.45 (17)
C1—C2—C7—C9−60.4 (3)C15—C14—N1—C13162.17 (15)
O1—C11—C12—O2−172.92 (15)C15—C14—N1—C21−72.78 (19)
O1—C11—C12—C1363.5 (2)C22—C21—N1—C13−69.2 (2)
O2—C12—C13—N172.9 (2)C22—C21—N1—C14165.45 (15)
C11—C12—C13—N1−164.73 (17)C25—C26—N2—C220.3 (3)
N1—C14—C15—C20136.15 (19)C23—C22—N2—C260.4 (3)
N1—C14—C15—C16−47.5 (2)C21—C22—N2—C26178.44 (17)
C20—C15—C16—O3−177.38 (18)C1—C6—O1—C11−4.5 (3)
C14—C15—C16—O36.1 (3)C5—C6—O1—C11175.02 (16)
C20—C15—C16—C172.6 (3)C12—C11—O1—C6170.36 (15)
C14—C15—C16—C17−173.90 (18)
D—H···AD—HH···AD···AD—H···A
O2—H2O···N2i0.822.092.897 (2)166
O3—H3···N10.821.992.721 (2)147
C14—H14A···O20.972.513.199 (3)128
C23—H23···O3ii0.932.473.114 (3)127
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯N2i0.822.092.897 (2)166
O3—H3⋯N10.821.992.721 (2)147
C14—H14A⋯O20.972.513.199 (3)128
C23—H23⋯O3ii0.932.473.114 (3)127

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Biological assays and noncovalent interactions of pyridine-2-carbaldehyde thiosemicarbazonecopper(II) drugs with [poly(dA-dT)](2), [poly(dG-dC)] (2), and calf thymus DNA.

Authors:  Rebeca Ruiz; Begoña García; Javier Garcia-Tojal; Natalia Busto; Saturnino Ibeas; José M Leal; Célia Martins; Jorge Gaspar; Joaquín Borrás; Rubén Gil-García; Marta González-Alvarez
Journal:  J Biol Inorg Chem       Date:  2010-01-20       Impact factor: 3.358

  2 in total

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