Literature DB >> 21837008

4-(Morpholin-4-yl)-3-(trifluoro-meth-yl)-benzonitrile.

Hoong-Kun Fun, Safra Izuani Jama Asik, Rajesha Kumar, Arun M Isloor, K N Shivananda.   

Abstract

In the title benzonitrile compound, C(12)H(11)F(3)N(2)O, an intra-molecular C-H⋯F hydrogen bond generates an S(7) ring motif. The trifluoro-methyl group is disordered over two orientations with a refined occupancy ratio of 0.549 (16):0.451 (16). The morpholine ring adopts a chair conformation. The benzene ring and mean plane of the morpholine ring make a dihedral angle of 58.04 (10)° with each other. In the crystal, mol-ecules are connected by inter-molecular C-H⋯F and C-H⋯O inter-actions to form R(2) (2)(8) ring motifs. These inter-actions also link the mol-ecules into chains parallel to the [10[Formula: see text]] direction.

Entities:  

Year:  2011        PMID: 21837008      PMCID: PMC3151857          DOI: 10.1107/S1600536811020666

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and applications of materials related to the title compound, see: Raparti et al. (2009 ▶). For the synthesis of fluvoxamine, see: Schareina et al. (2004 ▶). For synthesis of the title compound, see: Kleemann et al. (2001 ▶). For graph-set theory, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For definition of puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C12H11F3N2O M = 256.23 Monoclinic, a = 12.7003 (12) Å b = 6.8990 (7) Å c = 13.3484 (13) Å β = 91.668 (2)° V = 1169.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 296 K 0.85 × 0.25 × 0.12 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.899, T max = 0.985 11929 measured reflections 3382 independent reflections 2399 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.132 S = 1.07 3382 reflections 192 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811020666/rz2604sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020666/rz2604Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811020666/rz2604Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11F3N2OF(000) = 528
Mr = 256.23Dx = 1.456 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3536 reflections
a = 12.7003 (12) Åθ = 3.1–29.3°
b = 6.8990 (7) ŵ = 0.13 mm1
c = 13.3484 (13) ÅT = 296 K
β = 91.668 (2)°Plate, colourless
V = 1169.1 (2) Å30.85 × 0.25 × 0.12 mm
Z = 4
Bruker APEX DUO CCD area-detector diffractometer3382 independent reflections
Radiation source: fine-focus sealed tube2399 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 30.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −15→17
Tmin = 0.899, Tmax = 0.985k = −9→9
11929 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.132w = 1/[σ2(Fo2) + (0.0566P)2 + 0.1831P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
3382 reflectionsΔρmax = 0.25 e Å3
192 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.010 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F10.7836 (5)0.4513 (6)0.0784 (4)0.0736 (12)0.549 (16)
F20.8776 (5)0.2468 (9)0.1535 (5)0.0737 (13)0.549 (16)
F30.7289 (6)0.3126 (14)0.2091 (5)0.102 (2)0.549 (16)
F1B0.7282 (13)0.4501 (8)0.1030 (7)0.110 (3)0.451 (16)
F2B0.8734 (6)0.301 (2)0.1241 (10)0.107 (3)0.451 (16)
F3B0.7507 (7)0.2605 (15)0.2204 (4)0.090 (2)0.451 (16)
O10.98647 (10)0.34879 (18)−0.21269 (9)0.0691 (4)
N10.85532 (8)0.17086 (16)−0.07037 (8)0.0412 (3)
N20.45173 (11)−0.3350 (2)0.12877 (13)0.0742 (4)
C10.92779 (15)0.0579 (2)−0.12999 (16)0.0747 (6)
H1A0.89180.0116−0.19050.090*
H1B0.9527−0.0536−0.09190.090*
C21.01990 (16)0.1842 (3)−0.15715 (18)0.0829 (7)
H2A1.05700.2260−0.09640.099*
H2B1.06850.1093−0.19640.099*
C30.91524 (13)0.4581 (2)−0.15705 (15)0.0675 (5)
H3A0.89160.5687−0.19650.081*
H3B0.95100.5067−0.09700.081*
C40.82075 (12)0.3401 (2)−0.12777 (13)0.0598 (4)
H4A0.77460.4189−0.08780.072*
H4B0.78160.2990−0.18750.072*
C50.77145 (9)0.06434 (17)−0.02829 (8)0.0364 (3)
C60.72846 (11)−0.0982 (2)−0.07585 (10)0.0487 (3)
H6A0.7562−0.1390−0.13610.058*
C70.64609 (11)−0.2008 (2)−0.03650 (11)0.0505 (3)
H7A0.6187−0.3087−0.06990.061*
C80.60446 (10)−0.14135 (19)0.05332 (10)0.0418 (3)
C90.64620 (9)0.01808 (19)0.10331 (9)0.0394 (3)
H9A0.61820.05710.16370.047*
C100.72972 (9)0.12021 (17)0.06375 (9)0.0360 (3)
C110.77589 (11)0.2827 (2)0.12573 (11)0.0481 (3)
C120.51905 (11)−0.2485 (2)0.09623 (11)0.0517 (3)
U11U22U33U12U13U23
F10.100 (3)0.0403 (11)0.0802 (18)−0.0085 (14)−0.0012 (17)−0.0078 (10)
F20.053 (2)0.0799 (19)0.086 (3)−0.0015 (17)−0.020 (2)−0.0182 (16)
F30.085 (2)0.134 (5)0.090 (4)−0.050 (2)0.059 (2)−0.073 (3)
F1B0.175 (8)0.0450 (17)0.107 (4)0.028 (3)−0.034 (4)−0.021 (2)
F2B0.058 (3)0.148 (7)0.118 (6)−0.054 (4)0.036 (3)−0.083 (5)
F3B0.133 (5)0.104 (4)0.0318 (17)−0.054 (3)0.004 (2)−0.013 (2)
O10.0764 (8)0.0712 (7)0.0617 (7)−0.0107 (6)0.0354 (6)0.0108 (6)
N10.0425 (5)0.0427 (5)0.0392 (5)−0.0004 (4)0.0159 (4)0.0028 (4)
N20.0601 (8)0.0777 (10)0.0852 (11)−0.0232 (7)0.0116 (7)0.0158 (8)
C10.0833 (12)0.0516 (9)0.0924 (13)0.0031 (8)0.0588 (10)0.0010 (8)
C20.0725 (11)0.0692 (11)0.1103 (16)0.0081 (9)0.0591 (11)0.0188 (11)
C30.0664 (10)0.0548 (9)0.0829 (12)−0.0047 (7)0.0286 (9)0.0168 (8)
C40.0516 (8)0.0597 (9)0.0687 (10)−0.0008 (7)0.0136 (7)0.0229 (7)
C50.0377 (6)0.0381 (6)0.0337 (6)−0.0008 (5)0.0066 (4)0.0022 (5)
C60.0578 (8)0.0498 (7)0.0391 (7)−0.0086 (6)0.0120 (6)−0.0086 (5)
C70.0559 (8)0.0448 (7)0.0508 (8)−0.0115 (6)0.0041 (6)−0.0066 (6)
C80.0362 (6)0.0433 (6)0.0461 (7)−0.0038 (5)0.0028 (5)0.0078 (5)
C90.0361 (6)0.0456 (6)0.0368 (6)0.0005 (5)0.0074 (4)0.0028 (5)
C100.0356 (6)0.0380 (6)0.0348 (6)−0.0006 (4)0.0058 (4)−0.0012 (5)
C110.0506 (7)0.0496 (7)0.0447 (7)−0.0063 (6)0.0117 (6)−0.0101 (6)
C120.0448 (7)0.0528 (8)0.0577 (8)−0.0089 (6)0.0026 (6)0.0081 (6)
F1—C111.328 (4)C3—C41.511 (2)
F2—C111.357 (6)C3—H3A0.9700
F3—C111.294 (5)C3—H3B0.9700
F1B—C111.335 (5)C4—H4A0.9700
F2B—C111.245 (7)C4—H4B0.9700
F3B—C111.321 (6)C5—C61.3925 (18)
O1—C31.4064 (19)C5—C101.4060 (16)
O1—C21.415 (2)C6—C71.3794 (18)
N1—C51.4230 (14)C6—H6A0.9300
N1—C41.4573 (18)C7—C81.3863 (19)
N1—C11.4597 (17)C7—H7A0.9300
N2—C121.1388 (18)C8—C91.3840 (18)
C1—C21.511 (2)C8—C121.4449 (18)
C1—H1A0.9700C9—C101.3902 (16)
C1—H1B0.9700C9—H9A0.9300
C2—H2A0.9700C10—C111.5023 (18)
C2—H2B0.9700
C3—O1—C2109.97 (12)C5—C6—H6A119.0
C5—N1—C4113.82 (10)C6—C7—C8119.37 (12)
C5—N1—C1115.51 (11)C6—C7—H7A120.3
C4—N1—C1109.04 (12)C8—C7—H7A120.3
N1—C1—C2109.13 (14)C9—C8—C7120.10 (11)
N1—C1—H1A109.9C9—C8—C12119.81 (12)
C2—C1—H1A109.9C7—C8—C12120.08 (12)
N1—C1—H1B109.9C8—C9—C10120.36 (11)
C2—C1—H1B109.9C8—C9—H9A119.8
H1A—C1—H1B108.3C10—C9—H9A119.8
O1—C2—C1111.47 (17)C9—C10—C5120.27 (11)
O1—C2—H2A109.3C9—C10—C11117.32 (11)
C1—C2—H2A109.3C5—C10—C11122.33 (11)
O1—C2—H2B109.3F2B—C11—F3118.8 (5)
C1—C2—H2B109.3F2B—C11—F3B107.3 (6)
H2A—C2—H2B108.0F2B—C11—F179.4 (6)
O1—C3—C4112.06 (14)F3—C11—F1108.2 (4)
O1—C3—H3A109.2F3B—C11—F1125.4 (4)
C4—C3—H3A109.2F2B—C11—F1B110.7 (4)
O1—C3—H3B109.2F3—C11—F1B80.8 (4)
C4—C3—H3B109.2F3B—C11—F1B101.4 (5)
H3A—C3—H3B107.9F3—C11—F2104.7 (4)
N1—C4—C3109.77 (13)F3B—C11—F288.5 (5)
N1—C4—H4A109.7F1—C11—F2101.9 (3)
C3—C4—H4A109.7F1B—C11—F2129.9 (6)
N1—C4—H4B109.7F2B—C11—C10116.0 (4)
C3—C4—H4B109.7F3—C11—C10114.2 (3)
H4A—C4—H4B108.2F3B—C11—C10109.8 (4)
C6—C5—C10117.81 (11)F1—C11—C10115.1 (2)
C6—C5—N1121.60 (11)F1B—C11—C10110.7 (3)
C10—C5—N1120.59 (11)F2—C11—C10111.6 (3)
C7—C6—C5122.07 (12)N2—C12—C8178.91 (18)
C7—C6—H6A119.0
C5—N1—C1—C2−172.23 (15)C8—C9—C10—C51.04 (18)
C4—N1—C1—C258.1 (2)C8—C9—C10—C11−175.72 (12)
C3—O1—C2—C158.5 (2)C6—C5—C10—C9−1.85 (18)
N1—C1—C2—O1−59.4 (2)N1—C5—C10—C9178.54 (11)
C2—O1—C3—C4−57.5 (2)C6—C5—C10—C11174.75 (12)
C5—N1—C4—C3172.24 (13)N1—C5—C10—C11−4.86 (18)
C1—N1—C4—C3−57.19 (18)C9—C10—C11—F2B141.6 (9)
O1—C3—C4—N157.6 (2)C5—C10—C11—F2B−35.0 (9)
C4—N1—C5—C696.34 (15)C9—C10—C11—F3−2.1 (6)
C1—N1—C5—C6−30.95 (19)C5—C10—C11—F3−178.8 (5)
C4—N1—C5—C10−84.08 (15)C9—C10—C11—F3B19.9 (5)
C1—N1—C5—C10148.64 (14)C5—C10—C11—F3B−156.8 (5)
C10—C5—C6—C71.4 (2)C9—C10—C11—F1−128.2 (4)
N1—C5—C6—C7−178.98 (13)C5—C10—C11—F155.1 (4)
C5—C6—C7—C8−0.1 (2)C9—C10—C11—F1B−91.2 (8)
C6—C7—C8—C9−0.7 (2)C5—C10—C11—F1B92.2 (8)
C6—C7—C8—C12−179.22 (13)C9—C10—C11—F2116.3 (3)
C7—C8—C9—C100.27 (19)C5—C10—C11—F2−60.4 (3)
C12—C8—C9—C10178.77 (12)
D—H···AD—HH···AD···AD—H···A
C2—H2B···F3i0.972.493.242 (5)135.
C4—H4A···F10.972.232.909 (6)126.
C9—H9A···O1ii0.932.473.3588 (16)160.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2B⋯F3i0.972.493.242 (5)135
C4—H4A⋯F10.972.232.909 (6)126
C9—H9A⋯O1ii0.932.473.3588 (16)160

Symmetry codes: (i) ; (ii) .

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