| Literature DB >> 21837008 |
Hoong-Kun Fun, Safra Izuani Jama Asik, Rajesha Kumar, Arun M Isloor, K N Shivananda.
Abstract
In the title benzonitrile compound, C(12)H(11)F(3)N(2)O, an intra-molecular C-H⋯F hydrogen bond generates an S(7) ring motif. The trifluoro-methyl group is disordered over two orientations with a refined occupancy ratio of 0.549 (16):0.451 (16). The morpholine ring adopts a chair conformation. The benzene ring and mean plane of the morpholine ring make a dihedral angle of 58.04 (10)° with each other. In the crystal, mol-ecules are connected by inter-molecular C-H⋯F and C-H⋯O inter-actions to form R(2) (2)(8) ring motifs. These inter-actions also link the mol-ecules into chains parallel to the [10[Formula: see text]] direction.Entities:
Year: 2011 PMID: 21837008 PMCID: PMC3151857 DOI: 10.1107/S1600536811020666
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H11F3N2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3536 reflections |
| θ = 3.1–29.3° | |
| µ = 0.13 mm−1 | |
| β = 91.668 (2)° | Plate, colourless |
| 0.85 × 0.25 × 0.12 mm | |
| Bruker APEX DUO CCD area-detector diffractometer | 3382 independent reflections |
| Radiation source: fine-focus sealed tube | 2399 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 11929 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3382 reflections | Δρmax = 0.25 e Å−3 |
| 192 parameters | Δρmin = −0.16 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.010 (2) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| F1 | 0.7836 (5) | 0.4513 (6) | 0.0784 (4) | 0.0736 (12) | 0.549 (16) |
| F2 | 0.8776 (5) | 0.2468 (9) | 0.1535 (5) | 0.0737 (13) | 0.549 (16) |
| F3 | 0.7289 (6) | 0.3126 (14) | 0.2091 (5) | 0.102 (2) | 0.549 (16) |
| F1B | 0.7282 (13) | 0.4501 (8) | 0.1030 (7) | 0.110 (3) | 0.451 (16) |
| F2B | 0.8734 (6) | 0.301 (2) | 0.1241 (10) | 0.107 (3) | 0.451 (16) |
| F3B | 0.7507 (7) | 0.2605 (15) | 0.2204 (4) | 0.090 (2) | 0.451 (16) |
| O1 | 0.98647 (10) | 0.34879 (18) | −0.21269 (9) | 0.0691 (4) | |
| N1 | 0.85532 (8) | 0.17086 (16) | −0.07037 (8) | 0.0412 (3) | |
| N2 | 0.45173 (11) | −0.3350 (2) | 0.12877 (13) | 0.0742 (4) | |
| C1 | 0.92779 (15) | 0.0579 (2) | −0.12999 (16) | 0.0747 (6) | |
| H1A | 0.8918 | 0.0116 | −0.1905 | 0.090* | |
| H1B | 0.9527 | −0.0536 | −0.0919 | 0.090* | |
| C2 | 1.01990 (16) | 0.1842 (3) | −0.15715 (18) | 0.0829 (7) | |
| H2A | 1.0570 | 0.2260 | −0.0964 | 0.099* | |
| H2B | 1.0685 | 0.1093 | −0.1964 | 0.099* | |
| C3 | 0.91524 (13) | 0.4581 (2) | −0.15705 (15) | 0.0675 (5) | |
| H3A | 0.8916 | 0.5687 | −0.1965 | 0.081* | |
| H3B | 0.9510 | 0.5067 | −0.0970 | 0.081* | |
| C4 | 0.82075 (12) | 0.3401 (2) | −0.12777 (13) | 0.0598 (4) | |
| H4A | 0.7746 | 0.4189 | −0.0878 | 0.072* | |
| H4B | 0.7816 | 0.2990 | −0.1875 | 0.072* | |
| C5 | 0.77145 (9) | 0.06434 (17) | −0.02829 (8) | 0.0364 (3) | |
| C6 | 0.72846 (11) | −0.0982 (2) | −0.07585 (10) | 0.0487 (3) | |
| H6A | 0.7562 | −0.1390 | −0.1361 | 0.058* | |
| C7 | 0.64609 (11) | −0.2008 (2) | −0.03650 (11) | 0.0505 (3) | |
| H7A | 0.6187 | −0.3087 | −0.0699 | 0.061* | |
| C8 | 0.60446 (10) | −0.14135 (19) | 0.05332 (10) | 0.0418 (3) | |
| C9 | 0.64620 (9) | 0.01808 (19) | 0.10331 (9) | 0.0394 (3) | |
| H9A | 0.6182 | 0.0571 | 0.1637 | 0.047* | |
| C10 | 0.72972 (9) | 0.12021 (17) | 0.06375 (9) | 0.0360 (3) | |
| C11 | 0.77589 (11) | 0.2827 (2) | 0.12573 (11) | 0.0481 (3) | |
| C12 | 0.51905 (11) | −0.2485 (2) | 0.09623 (11) | 0.0517 (3) |
| F1 | 0.100 (3) | 0.0403 (11) | 0.0802 (18) | −0.0085 (14) | −0.0012 (17) | −0.0078 (10) |
| F2 | 0.053 (2) | 0.0799 (19) | 0.086 (3) | −0.0015 (17) | −0.020 (2) | −0.0182 (16) |
| F3 | 0.085 (2) | 0.134 (5) | 0.090 (4) | −0.050 (2) | 0.059 (2) | −0.073 (3) |
| F1B | 0.175 (8) | 0.0450 (17) | 0.107 (4) | 0.028 (3) | −0.034 (4) | −0.021 (2) |
| F2B | 0.058 (3) | 0.148 (7) | 0.118 (6) | −0.054 (4) | 0.036 (3) | −0.083 (5) |
| F3B | 0.133 (5) | 0.104 (4) | 0.0318 (17) | −0.054 (3) | 0.004 (2) | −0.013 (2) |
| O1 | 0.0764 (8) | 0.0712 (7) | 0.0617 (7) | −0.0107 (6) | 0.0354 (6) | 0.0108 (6) |
| N1 | 0.0425 (5) | 0.0427 (5) | 0.0392 (5) | −0.0004 (4) | 0.0159 (4) | 0.0028 (4) |
| N2 | 0.0601 (8) | 0.0777 (10) | 0.0852 (11) | −0.0232 (7) | 0.0116 (7) | 0.0158 (8) |
| C1 | 0.0833 (12) | 0.0516 (9) | 0.0924 (13) | 0.0031 (8) | 0.0588 (10) | 0.0010 (8) |
| C2 | 0.0725 (11) | 0.0692 (11) | 0.1103 (16) | 0.0081 (9) | 0.0591 (11) | 0.0188 (11) |
| C3 | 0.0664 (10) | 0.0548 (9) | 0.0829 (12) | −0.0047 (7) | 0.0286 (9) | 0.0168 (8) |
| C4 | 0.0516 (8) | 0.0597 (9) | 0.0687 (10) | −0.0008 (7) | 0.0136 (7) | 0.0229 (7) |
| C5 | 0.0377 (6) | 0.0381 (6) | 0.0337 (6) | −0.0008 (5) | 0.0066 (4) | 0.0022 (5) |
| C6 | 0.0578 (8) | 0.0498 (7) | 0.0391 (7) | −0.0086 (6) | 0.0120 (6) | −0.0086 (5) |
| C7 | 0.0559 (8) | 0.0448 (7) | 0.0508 (8) | −0.0115 (6) | 0.0041 (6) | −0.0066 (6) |
| C8 | 0.0362 (6) | 0.0433 (6) | 0.0461 (7) | −0.0038 (5) | 0.0028 (5) | 0.0078 (5) |
| C9 | 0.0361 (6) | 0.0456 (6) | 0.0368 (6) | 0.0005 (5) | 0.0074 (4) | 0.0028 (5) |
| C10 | 0.0356 (6) | 0.0380 (6) | 0.0348 (6) | −0.0006 (4) | 0.0058 (4) | −0.0012 (5) |
| C11 | 0.0506 (7) | 0.0496 (7) | 0.0447 (7) | −0.0063 (6) | 0.0117 (6) | −0.0101 (6) |
| C12 | 0.0448 (7) | 0.0528 (8) | 0.0577 (8) | −0.0089 (6) | 0.0026 (6) | 0.0081 (6) |
| F1—C11 | 1.328 (4) | C3—C4 | 1.511 (2) |
| F2—C11 | 1.357 (6) | C3—H3A | 0.9700 |
| F3—C11 | 1.294 (5) | C3—H3B | 0.9700 |
| F1B—C11 | 1.335 (5) | C4—H4A | 0.9700 |
| F2B—C11 | 1.245 (7) | C4—H4B | 0.9700 |
| F3B—C11 | 1.321 (6) | C5—C6 | 1.3925 (18) |
| O1—C3 | 1.4064 (19) | C5—C10 | 1.4060 (16) |
| O1—C2 | 1.415 (2) | C6—C7 | 1.3794 (18) |
| N1—C5 | 1.4230 (14) | C6—H6A | 0.9300 |
| N1—C4 | 1.4573 (18) | C7—C8 | 1.3863 (19) |
| N1—C1 | 1.4597 (17) | C7—H7A | 0.9300 |
| N2—C12 | 1.1388 (18) | C8—C9 | 1.3840 (18) |
| C1—C2 | 1.511 (2) | C8—C12 | 1.4449 (18) |
| C1—H1A | 0.9700 | C9—C10 | 1.3902 (16) |
| C1—H1B | 0.9700 | C9—H9A | 0.9300 |
| C2—H2A | 0.9700 | C10—C11 | 1.5023 (18) |
| C2—H2B | 0.9700 | ||
| C3—O1—C2 | 109.97 (12) | C5—C6—H6A | 119.0 |
| C5—N1—C4 | 113.82 (10) | C6—C7—C8 | 119.37 (12) |
| C5—N1—C1 | 115.51 (11) | C6—C7—H7A | 120.3 |
| C4—N1—C1 | 109.04 (12) | C8—C7—H7A | 120.3 |
| N1—C1—C2 | 109.13 (14) | C9—C8—C7 | 120.10 (11) |
| N1—C1—H1A | 109.9 | C9—C8—C12 | 119.81 (12) |
| C2—C1—H1A | 109.9 | C7—C8—C12 | 120.08 (12) |
| N1—C1—H1B | 109.9 | C8—C9—C10 | 120.36 (11) |
| C2—C1—H1B | 109.9 | C8—C9—H9A | 119.8 |
| H1A—C1—H1B | 108.3 | C10—C9—H9A | 119.8 |
| O1—C2—C1 | 111.47 (17) | C9—C10—C5 | 120.27 (11) |
| O1—C2—H2A | 109.3 | C9—C10—C11 | 117.32 (11) |
| C1—C2—H2A | 109.3 | C5—C10—C11 | 122.33 (11) |
| O1—C2—H2B | 109.3 | F2B—C11—F3 | 118.8 (5) |
| C1—C2—H2B | 109.3 | F2B—C11—F3B | 107.3 (6) |
| H2A—C2—H2B | 108.0 | F2B—C11—F1 | 79.4 (6) |
| O1—C3—C4 | 112.06 (14) | F3—C11—F1 | 108.2 (4) |
| O1—C3—H3A | 109.2 | F3B—C11—F1 | 125.4 (4) |
| C4—C3—H3A | 109.2 | F2B—C11—F1B | 110.7 (4) |
| O1—C3—H3B | 109.2 | F3—C11—F1B | 80.8 (4) |
| C4—C3—H3B | 109.2 | F3B—C11—F1B | 101.4 (5) |
| H3A—C3—H3B | 107.9 | F3—C11—F2 | 104.7 (4) |
| N1—C4—C3 | 109.77 (13) | F3B—C11—F2 | 88.5 (5) |
| N1—C4—H4A | 109.7 | F1—C11—F2 | 101.9 (3) |
| C3—C4—H4A | 109.7 | F1B—C11—F2 | 129.9 (6) |
| N1—C4—H4B | 109.7 | F2B—C11—C10 | 116.0 (4) |
| C3—C4—H4B | 109.7 | F3—C11—C10 | 114.2 (3) |
| H4A—C4—H4B | 108.2 | F3B—C11—C10 | 109.8 (4) |
| C6—C5—C10 | 117.81 (11) | F1—C11—C10 | 115.1 (2) |
| C6—C5—N1 | 121.60 (11) | F1B—C11—C10 | 110.7 (3) |
| C10—C5—N1 | 120.59 (11) | F2—C11—C10 | 111.6 (3) |
| C7—C6—C5 | 122.07 (12) | N2—C12—C8 | 178.91 (18) |
| C7—C6—H6A | 119.0 | ||
| C5—N1—C1—C2 | −172.23 (15) | C8—C9—C10—C5 | 1.04 (18) |
| C4—N1—C1—C2 | 58.1 (2) | C8—C9—C10—C11 | −175.72 (12) |
| C3—O1—C2—C1 | 58.5 (2) | C6—C5—C10—C9 | −1.85 (18) |
| N1—C1—C2—O1 | −59.4 (2) | N1—C5—C10—C9 | 178.54 (11) |
| C2—O1—C3—C4 | −57.5 (2) | C6—C5—C10—C11 | 174.75 (12) |
| C5—N1—C4—C3 | 172.24 (13) | N1—C5—C10—C11 | −4.86 (18) |
| C1—N1—C4—C3 | −57.19 (18) | C9—C10—C11—F2B | 141.6 (9) |
| O1—C3—C4—N1 | 57.6 (2) | C5—C10—C11—F2B | −35.0 (9) |
| C4—N1—C5—C6 | 96.34 (15) | C9—C10—C11—F3 | −2.1 (6) |
| C1—N1—C5—C6 | −30.95 (19) | C5—C10—C11—F3 | −178.8 (5) |
| C4—N1—C5—C10 | −84.08 (15) | C9—C10—C11—F3B | 19.9 (5) |
| C1—N1—C5—C10 | 148.64 (14) | C5—C10—C11—F3B | −156.8 (5) |
| C10—C5—C6—C7 | 1.4 (2) | C9—C10—C11—F1 | −128.2 (4) |
| N1—C5—C6—C7 | −178.98 (13) | C5—C10—C11—F1 | 55.1 (4) |
| C5—C6—C7—C8 | −0.1 (2) | C9—C10—C11—F1B | −91.2 (8) |
| C6—C7—C8—C9 | −0.7 (2) | C5—C10—C11—F1B | 92.2 (8) |
| C6—C7—C8—C12 | −179.22 (13) | C9—C10—C11—F2 | 116.3 (3) |
| C7—C8—C9—C10 | 0.27 (19) | C5—C10—C11—F2 | −60.4 (3) |
| C12—C8—C9—C10 | 178.77 (12) |
| H··· | ||||
| C2—H2B···F3i | 0.97 | 2.49 | 3.242 (5) | 135. |
| C4—H4A···F1 | 0.97 | 2.23 | 2.909 (6) | 126. |
| C9—H9A···O1ii | 0.93 | 2.47 | 3.3588 (16) | 160. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2 | 0.97 | 2.49 | 3.242 (5) | 135 |
| C4—H4 | 0.97 | 2.23 | 2.909 (6) | 126 |
| C9—H9 | 0.93 | 2.47 | 3.3588 (16) | 160 |
Symmetry codes: (i) ; (ii) .