Literature DB >> 21837006

Opipramol.

Hoong-Kun Fun, Wan-Sin Loh, M S Siddegowda, H S Yathirajan, B Narayana.   

Abstract

IN THE TITLE COMPOUND (SYSTEMATIC NAME: 2-{4-[3-(5H-dibenz[b,f]azepin-5-yl)prop-yl]piperazin-1-yl}ethanol), C(23)H(29)N(3)O, the 5H-dibenz[b,f]azepine and piperazine rings adopt boat and chair conformations, respectively, and the overall shape of the fused ring part of the molecule is a butterfly. In the crystal, O-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules into a layer parallel to the bc plane.

Entities:  

Year:  2011        PMID: 21837006      PMCID: PMC3151965          DOI: 10.1107/S1600536811021131

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the application of opipramol, see: Moller et al. (2001 ▶). For related structures, see: Jasinski et al. (2010 ▶); Nagaraj et al. (2005 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C23H29N3O M = 363.49 Monoclinic, a = 12.6215 (2) Å b = 10.5929 (2) Å c = 14.3629 (2) Å β = 90.966 (1)° V = 1920.02 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.59 × 0.36 × 0.30 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.955, T max = 0.977 30830 measured reflections 7949 independent reflections 6682 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.117 S = 1.03 7949 reflections 248 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.56 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811021131/is2726sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021131/is2726Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811021131/is2726Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H29N3OF(000) = 784
Mr = 363.49Dx = 1.257 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9885 reflections
a = 12.6215 (2) Åθ = 2.9–34.2°
b = 10.5929 (2) ŵ = 0.08 mm1
c = 14.3629 (2) ÅT = 100 K
β = 90.966 (1)°Block, colourless
V = 1920.02 (5) Å30.59 × 0.36 × 0.30 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer7949 independent reflections
Radiation source: fine-focus sealed tube6682 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 34.3°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −16→19
Tmin = 0.955, Tmax = 0.977k = −13→16
30830 measured reflectionsl = −22→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0611P)2 + 0.4097P] where P = (Fo2 + 2Fc2)/3
7949 reflections(Δ/σ)max = 0.001
248 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.10636 (5)1.33255 (6)1.06904 (4)0.01965 (12)
N10.33738 (5)0.74218 (6)0.57588 (4)0.01418 (11)
N20.21096 (5)1.06560 (6)0.73239 (4)0.01326 (11)
N30.12890 (5)1.23458 (6)0.87387 (4)0.01380 (11)
C10.35654 (6)0.60944 (7)0.58110 (5)0.01411 (12)
C20.45637 (6)0.56231 (8)0.60674 (5)0.01763 (13)
H2A0.51360.61920.61650.021*
C30.47316 (7)0.43319 (8)0.61812 (5)0.02086 (15)
H3A0.54120.40270.63630.025*
C40.39006 (8)0.34908 (8)0.60285 (6)0.02318 (16)
H4A0.40110.26100.61060.028*
C50.29077 (7)0.39456 (8)0.57628 (6)0.02090 (15)
H5A0.23440.33670.56560.025*
C60.27213 (6)0.52452 (7)0.56485 (5)0.01608 (13)
C70.16454 (6)0.56539 (8)0.53991 (5)0.01885 (14)
H7A0.10840.51360.56110.023*
C80.13636 (6)0.66812 (8)0.49038 (5)0.01869 (14)
H8A0.06270.68460.48310.022*
C90.20930 (6)0.75680 (7)0.44664 (5)0.01590 (13)
C100.17851 (7)0.81058 (8)0.36112 (5)0.02081 (15)
H10A0.10990.79310.33620.025*
C110.24589 (8)0.88867 (8)0.31209 (5)0.02329 (16)
H11A0.22390.92320.25390.028*
C120.34570 (7)0.91589 (8)0.34884 (6)0.02238 (16)
H12A0.39260.96850.31530.027*
C130.37721 (6)0.86616 (8)0.43480 (5)0.01829 (14)
H13A0.44540.88580.45970.022*
C140.30944 (6)0.78756 (7)0.48477 (5)0.01414 (12)
C150.40721 (6)0.82280 (7)0.63287 (5)0.01655 (13)
H15A0.47500.83470.60040.020*
H15B0.42290.77990.69280.020*
C160.35831 (6)0.95205 (7)0.65234 (5)0.01594 (13)
H16A0.41001.00400.68810.019*
H16B0.34340.99540.59250.019*
C170.25587 (6)0.94200 (7)0.70697 (5)0.01620 (13)
H17A0.20280.89490.66910.019*
H17B0.27000.89290.76450.019*
C180.10673 (6)1.04721 (7)0.77555 (5)0.01661 (13)
H18A0.11480.99200.83080.020*
H18B0.05801.00510.73070.020*
C190.06022 (6)1.17294 (8)0.80442 (5)0.01601 (13)
H19A0.05221.22810.74910.019*
H19B−0.01091.15940.83070.019*
C200.23213 (6)1.25503 (7)0.83151 (5)0.01593 (13)
H20A0.28051.29620.87720.019*
H20B0.22371.31210.77730.019*
C210.28023 (6)1.13121 (7)0.80016 (5)0.01553 (13)
H21A0.34971.14790.77160.019*
H21B0.29241.07620.85500.019*
C220.08179 (6)1.35398 (7)0.90363 (5)0.01556 (13)
H22A0.00541.34030.91440.019*
H22B0.08811.41620.85260.019*
C230.13187 (6)1.40919 (7)0.99127 (5)0.01650 (13)
H23A0.20971.41320.98470.020*
H23B0.10531.49601.00100.020*
H1O10.1474 (12)1.3609 (15)1.1160 (11)0.047 (4)*
U11U22U33U12U13U23
O10.0255 (3)0.0212 (3)0.0123 (2)−0.0037 (2)−0.0003 (2)−0.00024 (19)
N10.0171 (3)0.0124 (3)0.0129 (2)0.0007 (2)−0.00349 (19)−0.00178 (19)
N20.0140 (2)0.0135 (3)0.0123 (2)−0.0022 (2)−0.00079 (19)−0.00190 (19)
N30.0138 (2)0.0157 (3)0.0119 (2)−0.0006 (2)−0.00102 (19)−0.00231 (19)
C10.0180 (3)0.0130 (3)0.0113 (3)0.0014 (2)−0.0002 (2)−0.0009 (2)
C20.0203 (3)0.0175 (3)0.0150 (3)0.0033 (3)−0.0019 (2)−0.0009 (2)
C30.0276 (4)0.0191 (3)0.0159 (3)0.0078 (3)−0.0006 (3)0.0010 (2)
C40.0352 (4)0.0149 (3)0.0196 (3)0.0043 (3)0.0037 (3)0.0018 (3)
C50.0289 (4)0.0155 (3)0.0183 (3)−0.0023 (3)0.0036 (3)−0.0002 (3)
C60.0199 (3)0.0153 (3)0.0131 (3)−0.0010 (2)0.0018 (2)−0.0017 (2)
C70.0178 (3)0.0205 (4)0.0184 (3)−0.0035 (3)0.0021 (2)−0.0039 (3)
C80.0157 (3)0.0219 (4)0.0184 (3)0.0004 (3)−0.0010 (2)−0.0059 (3)
C90.0172 (3)0.0165 (3)0.0139 (3)0.0036 (2)−0.0019 (2)−0.0036 (2)
C100.0251 (4)0.0211 (4)0.0160 (3)0.0063 (3)−0.0062 (3)−0.0038 (3)
C110.0349 (4)0.0213 (4)0.0136 (3)0.0087 (3)−0.0013 (3)−0.0003 (3)
C120.0306 (4)0.0196 (4)0.0171 (3)0.0047 (3)0.0058 (3)0.0021 (3)
C130.0194 (3)0.0177 (3)0.0177 (3)0.0023 (3)0.0023 (2)−0.0002 (2)
C140.0163 (3)0.0136 (3)0.0125 (3)0.0029 (2)−0.0007 (2)−0.0020 (2)
C150.0172 (3)0.0151 (3)0.0172 (3)0.0009 (2)−0.0041 (2)−0.0034 (2)
C160.0179 (3)0.0134 (3)0.0165 (3)−0.0006 (2)−0.0003 (2)−0.0025 (2)
C170.0190 (3)0.0126 (3)0.0170 (3)−0.0016 (2)0.0007 (2)−0.0017 (2)
C180.0168 (3)0.0181 (3)0.0150 (3)−0.0054 (2)0.0012 (2)−0.0026 (2)
C190.0135 (3)0.0210 (3)0.0135 (3)−0.0019 (2)−0.0009 (2)−0.0027 (2)
C200.0142 (3)0.0159 (3)0.0177 (3)−0.0019 (2)0.0001 (2)−0.0039 (2)
C210.0144 (3)0.0169 (3)0.0152 (3)−0.0003 (2)−0.0026 (2)−0.0037 (2)
C220.0169 (3)0.0163 (3)0.0135 (3)0.0020 (2)−0.0008 (2)−0.0005 (2)
C230.0198 (3)0.0161 (3)0.0136 (3)−0.0008 (2)0.0009 (2)−0.0015 (2)
O1—C231.4221 (9)C11—C121.3879 (13)
O1—H1O10.896 (16)C11—H11A0.9500
N1—C11.4284 (10)C12—C131.3941 (11)
N1—C141.4327 (9)C12—H12A0.9500
N1—C151.4669 (9)C13—C141.4002 (11)
N2—C211.4719 (9)C13—H13A0.9500
N2—C171.4750 (10)C15—C161.5295 (10)
N2—C181.4766 (9)C15—H15A0.9900
N3—C201.4633 (9)C15—H15B0.9900
N3—C191.4641 (9)C16—C171.5275 (11)
N3—C221.4644 (10)C16—H16A0.9900
C1—C21.3988 (10)C16—H16B0.9900
C1—C61.4109 (11)C17—H17A0.9900
C2—C31.3932 (11)C17—H17B0.9900
C2—H2A0.9500C18—C191.5160 (11)
C3—C41.3908 (13)C18—H18A0.9900
C3—H3A0.9500C18—H18B0.9900
C4—C51.3900 (13)C19—H19A0.9900
C4—H4A0.9500C19—H19B0.9900
C5—C61.4057 (11)C20—C211.5168 (11)
C5—H5A0.9500C20—H20A0.9900
C6—C71.4641 (11)C20—H20B0.9900
C7—C81.3446 (12)C21—H21A0.9900
C7—H7A0.9500C21—H21B0.9900
C8—C91.4644 (12)C22—C231.5163 (10)
C8—H8A0.9500C22—H22A0.9900
C9—C101.4029 (11)C22—H22B0.9900
C9—C141.4072 (10)C23—H23A0.9900
C10—C111.3870 (13)C23—H23B0.9900
C10—H10A0.9500
C23—O1—H1O1105.3 (10)N1—C15—H15A109.1
C1—N1—C14114.65 (6)C16—C15—H15A109.1
C1—N1—C15116.37 (6)N1—C15—H15B109.1
C14—N1—C15116.79 (6)C16—C15—H15B109.1
C21—N2—C17110.88 (6)H15A—C15—H15B107.8
C21—N2—C18107.94 (6)C17—C16—C15112.28 (6)
C17—N2—C18109.61 (6)C17—C16—H16A109.1
C20—N3—C19107.69 (5)C15—C16—H16A109.1
C20—N3—C22111.24 (6)C17—C16—H16B109.1
C19—N3—C22110.21 (6)C15—C16—H16B109.1
C2—C1—C6119.36 (7)H16A—C16—H16B107.9
C2—C1—N1121.07 (7)N2—C17—C16113.42 (6)
C6—C1—N1119.49 (6)N2—C17—H17A108.9
C3—C2—C1121.06 (8)C16—C17—H17A108.9
C3—C2—H2A119.5N2—C17—H17B108.9
C1—C2—H2A119.5C16—C17—H17B108.9
C4—C3—C2119.84 (8)H17A—C17—H17B107.7
C4—C3—H3A120.1N2—C18—C19110.53 (6)
C2—C3—H3A120.1N2—C18—H18A109.5
C5—C4—C3119.69 (8)C19—C18—H18A109.5
C5—C4—H4A120.2N2—C18—H18B109.5
C3—C4—H4A120.2C19—C18—H18B109.5
C4—C5—C6121.32 (8)H18A—C18—H18B108.1
C4—C5—H5A119.3N3—C19—C18110.52 (6)
C6—C5—H5A119.3N3—C19—H19A109.5
C5—C6—C1118.73 (7)C18—C19—H19A109.5
C5—C6—C7118.10 (7)N3—C19—H19B109.5
C1—C6—C7123.14 (7)C18—C19—H19B109.5
C8—C7—C6127.21 (7)H19A—C19—H19B108.1
C8—C7—H7A116.4N3—C20—C21111.04 (6)
C6—C7—H7A116.4N3—C20—H20A109.4
C7—C8—C9125.70 (7)C21—C20—H20A109.4
C7—C8—H8A117.1N3—C20—H20B109.4
C9—C8—H8A117.1C21—C20—H20B109.4
C10—C9—C14118.72 (7)H20A—C20—H20B108.0
C10—C9—C8117.98 (7)N2—C21—C20111.61 (6)
C14—C9—C8123.27 (7)N2—C21—H21A109.3
C11—C10—C9121.56 (8)C20—C21—H21A109.3
C11—C10—H10A119.2N2—C21—H21B109.3
C9—C10—H10A119.2C20—C21—H21B109.3
C10—C11—C12119.42 (7)H21A—C21—H21B108.0
C10—C11—H11A120.3N3—C22—C23114.20 (6)
C12—C11—H11A120.3N3—C22—H22A108.7
C11—C12—C13120.12 (8)C23—C22—H22A108.7
C11—C12—H12A119.9N3—C22—H22B108.7
C13—C12—H12A119.9C23—C22—H22B108.7
C12—C13—C14120.73 (8)H22A—C22—H22B107.6
C12—C13—H13A119.6O1—C23—C22109.58 (6)
C14—C13—H13A119.6O1—C23—H23A109.8
C13—C14—C9119.38 (7)C22—C23—H23A109.8
C13—C14—N1121.65 (7)O1—C23—H23B109.8
C9—C14—N1118.91 (7)C22—C23—H23B109.8
N1—C15—C16112.50 (6)H23A—C23—H23B108.2
C14—N1—C1—C2116.85 (7)C10—C9—C14—C13−2.75 (11)
C15—N1—C1—C2−24.50 (10)C8—C9—C14—C13175.33 (7)
C14—N1—C1—C6−66.45 (9)C10—C9—C14—N1174.38 (7)
C15—N1—C1—C6152.20 (7)C8—C9—C14—N1−7.54 (11)
C6—C1—C2—C3−1.21 (11)C1—N1—C14—C13−111.94 (8)
N1—C1—C2—C3175.49 (7)C15—N1—C14—C1329.25 (10)
C1—C2—C3—C40.74 (12)C1—N1—C14—C971.01 (8)
C2—C3—C4—C50.03 (12)C15—N1—C14—C9−147.81 (7)
C3—C4—C5—C6−0.32 (12)C1—N1—C15—C16−158.48 (6)
C4—C5—C6—C1−0.14 (11)C14—N1—C15—C1661.01 (8)
C4—C5—C6—C7−177.90 (7)N1—C15—C16—C1761.73 (8)
C2—C1—C6—C50.90 (10)C21—N2—C17—C16−67.12 (8)
N1—C1—C6—C5−175.86 (7)C18—N2—C17—C16173.81 (6)
C2—C1—C6—C7178.53 (7)C15—C16—C17—N2175.98 (6)
N1—C1—C6—C71.78 (10)C21—N2—C18—C1957.76 (8)
C5—C6—C7—C8−150.54 (8)C17—N2—C18—C19178.62 (6)
C1—C6—C7—C831.80 (12)C20—N3—C19—C1860.33 (8)
C6—C7—C8—C93.66 (13)C22—N3—C19—C18−178.17 (6)
C7—C8—C9—C10144.64 (8)N2—C18—C19—N3−61.60 (8)
C7—C8—C9—C14−33.45 (12)C19—N3—C20—C21−58.73 (8)
C14—C9—C10—C112.62 (12)C22—N3—C20—C21−179.59 (6)
C8—C9—C10—C11−175.56 (7)C17—N2—C21—C20−176.59 (6)
C9—C10—C11—C12−0.88 (13)C18—N2—C21—C20−56.52 (8)
C10—C11—C12—C13−0.73 (12)N3—C20—C21—N258.74 (8)
C11—C12—C13—C140.55 (12)C20—N3—C22—C23−74.86 (8)
C12—C13—C14—C91.22 (11)C19—N3—C22—C23165.77 (6)
C12—C13—C14—N1−175.83 (7)N3—C22—C23—O1−69.38 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···N2i0.896 (16)1.999 (16)2.8822 (9)168.3 (14)
C5—H5A···O1ii0.952.413.3478 (11)167.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯N2i0.896 (16)1.999 (16)2.8822 (9)168.3 (14)
C5—H5A⋯O1ii0.952.413.3478 (11)167

Symmetry codes: (i) ; (ii) .

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Journal:  Brain Sci       Date:  2021-01-22
  3 in total

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