Literature DB >> 21836927

[μ-1,4-Bis(1,2,4-triazol-1-ylmeth-yl)benzene]-bis-[aqua-(pyridine-2,6-dicarboxyl-ato)copper(II)] monohydrate.

Gui-Ying Dong, Cui-Hong He, Liu Tong-Fei, Xiao-Chen Deng, Xiao-Ge Shi.   

Abstract

The title compound, [Cu(2)(C(7)H(3)NO(4))(2)(C(12)H(12)N(6))(H(2)O)(2)]·H(2)O, displays a discrete dinuclear structure, in which the central Cu(II) atom is five-coordinated in a distorted square-based pyramidal coordination geometry and the flexible ligand 1,4-bis-(1,2,4-triazol-1-ylmeth-yl)benzene adopts a bis-monodentate bridging mode linking the Cu(II) atoms. It is further assembled by O-H⋯O hydrogen-bond inter-actions involving both the coordinated and uncoordinated water molecules. The latter exhibits half-occupancy.

Entities:  

Year:  2011        PMID: 21836927      PMCID: PMC3151849          DOI: 10.1107/S1600536811022756

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the versatile conformations of the flexible 1,4-bis­(1,2,4- triazol-1-yl-meth­yl)benzene ligand and related complexes, see: Arion et al. (2003 ▶); Peng et al. (2004 ▶, 2006 ▶); Meng et al. (2004 ▶); Li et al. (2005 ▶); Lin & Dong (2007 ▶); Ding et al. (2009 ▶).

Experimental

Crystal data

[Cu2(C7H3NO4)2(C12H12N6)(H2O)2]·H2O M = 751.63 Monoclinic, a = 4.9017 (4) Å b = 10.3022 (9) Å c = 30.178 (3) Å β = 93.541 (1)° V = 1521.0 (2) Å3 Z = 2 Mo Kα radiation μ = 1.47 mm−1 T = 298 K 0.20 × 0.15 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.881, T max = 0.901 7340 measured reflections 2678 independent reflections 2256 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.161 S = 1.06 2678 reflections 217 parameters H-atom parameters constrained Δρmax = 1.40 e Å−3 Δρmin = −0.40 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811022756/jh2295sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022756/jh2295Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C7H3NO4)2(C12H12N6)(H2O)2]·H2OF(000) = 764
Mr = 751.63Dx = 1.641 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3568 reflections
a = 4.9017 (4) Åθ = 22.3–3.6°
b = 10.3022 (9) ŵ = 1.47 mm1
c = 30.178 (3) ÅT = 298 K
β = 93.541 (1)°Prism, blue
V = 1521.0 (2) Å30.20 × 0.15 × 0.11 mm
Z = 2
Bruker SMART CCD area-detector diffractometer2678 independent reflections
Radiation source: fine–focus sealed tube2256 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −5→5
Tmin = 0.881, Tmax = 0.901k = −12→12
7340 measured reflectionsl = −35→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.1045P)2 + 1.8845P] where P = (Fo2 + 2Fc2)/3
2678 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 1.40 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.08344 (10)0.98034 (5)0.149509 (16)0.0318 (2)
O3−0.1809 (6)0.9403 (3)0.19769 (10)0.0376 (7)
O10.3528 (6)0.9508 (3)0.10311 (10)0.0392 (7)
N10.1905 (7)0.8071 (3)0.16460 (11)0.0300 (8)
C7−0.1409 (9)0.8318 (4)0.21771 (14)0.0328 (9)
O4−0.2555 (7)0.7960 (3)0.25024 (11)0.0469 (8)
N4−0.0779 (7)1.1422 (3)0.12697 (12)0.0346 (8)
C20.3801 (9)0.7519 (4)0.14164 (14)0.0335 (9)
C30.4592 (10)0.6261 (4)0.15103 (16)0.0419 (11)
H30.59170.58590.13500.050*
C60.0697 (8)0.7462 (4)0.19736 (13)0.0309 (9)
O20.6818 (8)0.8113 (4)0.08671 (12)0.0565 (10)
C11−0.1952 (9)1.4310 (5)0.02197 (15)0.0415 (11)
C10.4833 (9)0.8436 (4)0.10695 (14)0.0358 (10)
C50.1422 (10)0.6216 (4)0.20832 (16)0.0417 (11)
H50.06130.57870.23120.050*
C12−0.0882 (11)1.3819 (5)−0.01557 (17)0.0486 (12)
H12−0.14731.3016−0.02660.058*
C40.3384 (10)0.5605 (5)0.18465 (17)0.0453 (11)
H40.38900.47540.19140.054*
O1W0.3552 (8)1.0793 (4)0.20033 (14)0.0698 (13)
N2−0.2780 (8)1.2853 (4)0.08451 (13)0.0439 (10)
C13−0.1072 (11)1.5492 (5)0.03729 (17)0.0492 (12)
H13−0.17881.58410.06250.059*
C10−0.4037 (11)1.3552 (6)0.04620 (19)0.0576 (15)
H10A−0.54111.41440.05620.069*
H10B−0.49421.29360.02590.069*
C9−0.1903 (11)1.1643 (5)0.08746 (16)0.0465 (12)
H9−0.20641.10370.06460.056*
N3−0.2233 (16)1.3460 (5)0.12323 (17)0.092 (2)
C8−0.1028 (17)1.2542 (6)0.14744 (19)0.080 (2)
H8−0.03981.26720.17680.096*
O2W0.746 (3)0.9295 (7)0.0049 (2)0.092 (4)0.50
H2WA0.91520.94720.00770.137*0.50
H2WB0.59660.97140.00180.137*0.50
H1WA0.32011.13700.21830.137*
H1WB0.51771.04750.20230.137*
U11U22U33U12U13U23
Cu10.0373 (4)0.0240 (3)0.0348 (4)0.0079 (2)0.0068 (2)0.00618 (19)
O30.0425 (17)0.0334 (16)0.0376 (16)0.0129 (14)0.0083 (13)0.0073 (14)
O10.0469 (18)0.0330 (16)0.0390 (17)0.0053 (14)0.0130 (14)0.0077 (13)
N10.0351 (19)0.0255 (17)0.0296 (18)0.0040 (14)0.0026 (14)0.0005 (14)
C70.037 (2)0.030 (2)0.033 (2)0.0001 (18)0.0042 (18)0.0012 (17)
O40.063 (2)0.0381 (18)0.0418 (18)0.0049 (16)0.0205 (16)0.0073 (15)
N40.042 (2)0.0274 (18)0.035 (2)0.0085 (15)0.0039 (15)0.0055 (15)
C20.038 (2)0.030 (2)0.032 (2)0.0025 (18)0.0025 (17)−0.0045 (17)
C30.047 (3)0.031 (2)0.048 (3)0.013 (2)0.009 (2)−0.003 (2)
C60.036 (2)0.026 (2)0.030 (2)0.0017 (17)−0.0005 (17)0.0018 (17)
O20.063 (2)0.054 (2)0.056 (2)0.0176 (18)0.0296 (18)0.0073 (17)
C110.043 (3)0.038 (3)0.043 (3)0.010 (2)−0.006 (2)0.015 (2)
C10.044 (3)0.031 (2)0.033 (2)0.0020 (19)0.0056 (19)−0.0015 (17)
C50.051 (3)0.030 (2)0.044 (3)0.004 (2)0.008 (2)0.008 (2)
C120.062 (3)0.031 (2)0.051 (3)0.004 (2)−0.003 (2)−0.003 (2)
C40.056 (3)0.024 (2)0.056 (3)0.010 (2)0.008 (2)0.006 (2)
O1W0.049 (2)0.074 (3)0.083 (3)0.026 (2)−0.0229 (19)−0.046 (2)
N20.046 (2)0.041 (2)0.045 (2)0.0095 (18)−0.0008 (17)0.0148 (18)
C130.066 (3)0.045 (3)0.037 (3)0.013 (3)0.007 (2)−0.003 (2)
C100.049 (3)0.060 (3)0.063 (3)0.010 (3)−0.004 (2)0.034 (3)
C90.068 (3)0.031 (2)0.040 (3)0.005 (2)−0.005 (2)0.006 (2)
N30.173 (6)0.051 (3)0.049 (3)0.057 (4)−0.007 (3)0.000 (2)
C80.155 (7)0.043 (3)0.039 (3)0.042 (4)−0.015 (3)−0.001 (2)
O2W0.235 (12)0.026 (4)0.017 (3)0.038 (5)0.034 (5)0.010 (3)
Cu1—N11.908 (3)C11—C101.510 (7)
Cu1—N41.950 (3)C5—C41.384 (7)
Cu1—O12.006 (3)C5—H50.9300
Cu1—O32.048 (3)C12—C13i1.389 (7)
Cu1—O1W2.217 (4)C12—H120.9300
O3—C71.280 (5)C4—H40.9300
O1—C11.278 (5)O1W—H1WA0.8301
N1—C21.322 (5)O1W—H1WB0.8599
N1—C61.339 (5)N2—C91.319 (6)
C7—O41.218 (5)N2—N31.338 (6)
C7—C61.517 (6)N2—C101.466 (6)
N4—C91.302 (6)C13—C12i1.389 (7)
N4—C81.318 (7)C13—H130.9300
C2—C31.377 (6)C10—H10A0.9700
C2—C11.520 (6)C10—H10B0.9700
C3—C41.382 (7)C9—H90.9300
C3—H30.9300N3—C81.313 (7)
C6—C51.367 (6)C8—H80.9300
O2—C11.226 (5)O2W—H2WA0.8500
C11—C131.364 (8)O2W—H2WB0.8482
C11—C121.374 (7)
N1—Cu1—N4169.43 (16)O2—C1—C2118.8 (4)
N1—Cu1—O180.88 (13)O1—C1—C2114.4 (4)
N4—Cu1—O199.00 (14)C6—C5—C4118.7 (4)
N1—Cu1—O379.57 (13)C6—C5—H5120.6
N4—Cu1—O399.15 (13)C4—C5—H5120.6
O1—Cu1—O3159.60 (14)C11—C12—C13i120.7 (5)
N1—Cu1—O1W96.92 (16)C11—C12—H12119.7
N4—Cu1—O1W93.53 (15)C13i—C12—H12119.7
O1—Cu1—O1W99.18 (15)C3—C4—C5120.0 (4)
O3—Cu1—O1W88.91 (16)C3—C4—H4120.0
C7—O3—Cu1115.2 (3)C5—C4—H4120.0
C1—O1—Cu1114.5 (3)Cu1—O1W—H1WA129.9
C2—N1—C6122.9 (4)Cu1—O1W—H1WB112.7
C2—N1—Cu1118.0 (3)H1WA—O1W—H1WB117.2
C6—N1—Cu1119.1 (3)C9—N2—N3109.6 (4)
O4—C7—O3125.5 (4)C9—N2—C10129.6 (5)
O4—C7—C6120.6 (4)N3—N2—C10120.7 (4)
O3—C7—C6113.9 (3)C11—C13—C12i120.6 (5)
C9—N4—C8103.3 (4)C11—C13—H13119.7
C9—N4—Cu1127.5 (3)C12i—C13—H13119.7
C8—N4—Cu1129.2 (3)N2—C10—C11111.8 (4)
N1—C2—C3119.7 (4)N2—C10—H10A109.2
N1—C2—C1111.6 (4)C11—C10—H10A109.2
C3—C2—C1128.7 (4)N2—C10—H10B109.2
C2—C3—C4118.9 (4)C11—C10—H10B109.2
C2—C3—H3120.6H10A—C10—H10B107.9
C4—C3—H3120.6N4—C9—N2110.2 (4)
N1—C6—C5119.9 (4)N4—C9—H9124.9
N1—C6—C7111.7 (3)N2—C9—H9124.9
C5—C6—C7128.5 (4)C8—N3—N2102.0 (5)
C13—C11—C12118.7 (5)N3—C8—N4114.9 (5)
C13—C11—C10120.4 (5)N3—C8—H8122.5
C12—C11—C10120.9 (5)N4—C8—H8122.5
O2—C1—O1126.7 (4)H2WA—O2W—H2WB137.0
D—H···AD—HH···AD···AD—H···A
O2W—H2WA···O2Wii0.852.152.920 (5)151.
O2W—H2WB···O2Wiii0.851.962.807 (5)179.
O1W—H1WA···O4iv0.831.932.746 (5)168.
O1W—H1WB···O3v0.861.862.692 (5)164.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2W—H2WA⋯O2Wi0.852.152.920 (5)151
O2W—H2WB⋯O2Wii0.851.962.807 (5)179
O1W—H1WA⋯O4iii0.831.932.746 (5)168
O1W—H1WB⋯O3iv0.861.862.692 (5)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Supramolecular isomers in the same crystal: a new type of entanglement involving ribbons of rings and 2D (4,4) networks polycatenated in a 3D architecture.

Authors:  Baolong Li; Yanfen Peng; Baozong Li; Yong Zhang
Journal:  Chem Commun (Camb)       Date:  2005-03-18       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis, X-ray diffraction structures, spectroscopic properties, and in vitro antitumor activity of isomeric (1H-1,2,4-triazole)Ru(III) complexes.

Authors:  Vladimir B Arion; Erwin Reisner; Madeleine Fremuth; Michael A Jakupec; Bernhard K Keppler; Vadim Yu Kukushkin; Armando J L Pombeiro
Journal:  Inorg Chem       Date:  2003-09-22       Impact factor: 5.165

4.  Hydrothermal syntheses, crystal structures, and characteristics of a series of Cd-btx coordination polymers (btx = 1,4-Bis(triazol-1-ylmethyl)benzene).

Authors:  Xiangru Meng; Yinglin Song; Hongwei Hou; Huayun Han; Bo Xiao; Yaoting Fan; Yu Zhu
Journal:  Inorg Chem       Date:  2004-05-31       Impact factor: 5.165

  4 in total

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