Literature DB >> 21836911

Dichlorido(4-meth-oxy-2-{[2-(piperazin-4-ium-1-yl)eth-yl]imino-meth-yl}phenol-ate)cadmium.

Muhammad Saleh Salga1, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

In the title compound, [CdCl(2)(C(14)H(21n class="Chemical">)N(3)O(2))], the Schiff base ligand chelates the Cd(II) ion in an N,N,O-tridentate fashion. Two Cl atoms complete a distorted square-pyramidal coordination environment around the metal atom. In the crystal, adjacent mol-ecules are linked through C-H⋯π inter-actions into infinite chains along the a axis. The mol-ecules are further connected into a three-dimensional network via N-H⋯O, N-H⋯Cl and C-H⋯Cl inter-actions. The ethyl-ene group is disordered over two sets of sites in a 0.520 (10):0.480 (10) ratio.

Entities:  

Year:  2011        PMID: 21836911      PMCID: PMC3151769          DOI: 10.1107/S1600536811022100

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar structures, see: Mukhopadhyay et al. (2003 ▶); Xu et al. (2008 ▶); Saleh Salga et al. (2010 ▶). For a description of the geometry of complexes with five-coordinated metal ions, see: Addison et al. (1984 ▶).

Experimental

Crystal data

[CdCl2(C14H21N3O2)] M = 446.64 Monoclinic, a = 10.1173 (9) Å b = 16.2686 (15) Å c = 10.3486 (10) Å β = 103.069 (1)° V = 1659.2 (3) Å3 Z = 4 Mo Kα radiation μ = 1.65 mm−1 T = 100 K 0.25 × 0.18 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.684, T max = 0.937 14540 measured reflections 3624 independent reflections 3138 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.061 S = 1.07 3624 reflections 225 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.65 e Å−3 Δρmin = −0.78 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811022100/xu5230sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022100/xu5230Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CdCl2(C14H21N3O2)]F(000) = 896
Mr = 446.64Dx = 1.788 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4675 reflections
a = 10.1173 (9) Åθ = 2.4–30.3°
b = 16.2686 (15) ŵ = 1.65 mm1
c = 10.3486 (10) ÅT = 100 K
β = 103.069 (1)°Plate, yellow
V = 1659.2 (3) Å30.25 × 0.18 × 0.04 mm
Z = 4
Bruker APEXII CCD diffractometer3624 independent reflections
Radiation source: fine-focus sealed tube3138 reflections with I > 2σ(I)
graphiteRint = 0.040
φ and ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.684, Tmax = 0.937k = −20→20
14540 measured reflectionsl = −12→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.061H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0115P)2 + 3.0473P] where P = (Fo2 + 2Fc2)/3
3624 reflections(Δ/σ)max < 0.001
225 parametersΔρmax = 0.65 e Å3
5 restraintsΔρmin = −0.78 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cd10.34107 (2)−0.052048 (13)0.68131 (2)0.01663 (7)
Cl10.56656 (8)−0.11579 (5)0.74780 (10)0.0354 (2)
Cl20.23070 (8)−0.07175 (5)0.87000 (8)0.02395 (17)
O10.2602 (2)−0.15436 (13)0.5407 (2)0.0251 (5)
O2−0.1051 (2)−0.17553 (14)0.0579 (2)0.0268 (5)
N10.2318 (3)0.02551 (17)0.5110 (3)0.0360 (8)
N20.4238 (3)0.08960 (15)0.7371 (3)0.0201 (6)
N30.6073 (3)0.20036 (17)0.9144 (3)0.0282 (7)
H3A0.644 (3)0.2509 (14)0.941 (4)0.034*
H3B0.647 (3)0.1620 (18)0.972 (3)0.034*
C10.1647 (3)−0.15272 (19)0.4325 (3)0.0213 (7)
C20.1038 (3)−0.22708 (19)0.3799 (4)0.0250 (7)
H20.1240−0.27560.43160.030*
C30.0166 (3)−0.2327 (2)0.2574 (4)0.0259 (7)
H3−0.0201−0.28460.22570.031*
C4−0.0181 (3)−0.16303 (19)0.1797 (3)0.0199 (6)
C50.0301 (3)−0.08803 (19)0.2301 (3)0.0221 (7)
H50.0028−0.03980.17920.027*
C60.1199 (3)−0.08094 (18)0.3567 (3)0.0198 (6)
C70.1562 (4)0.0024 (2)0.3998 (4)0.0336 (9)
H70.12010.04480.33900.040*
C8−0.1108 (3)−0.1114 (2)−0.0365 (3)0.0277 (7)
H8A−0.1539−0.0629−0.00770.042*
H8B−0.1639−0.1297−0.12300.042*
H8C−0.0186−0.0974−0.04400.042*
C90.2794 (9)0.1146 (3)0.5179 (6)0.027 (2)0.520 (10)
H9A0.36230.11950.48280.033*0.520 (10)
H9B0.20810.15000.46390.033*0.520 (10)
C100.3083 (6)0.1410 (3)0.6602 (6)0.0207 (17)0.520 (10)
H10A0.22670.13330.69650.025*0.520 (10)
H10B0.33340.19990.66740.025*0.520 (10)
C9'0.2199 (7)0.1130 (4)0.5540 (8)0.0213 (18)0.480 (10)
H9C0.17860.14830.47750.026*0.480 (10)
H9D0.16460.11660.62150.026*0.480 (10)
C10'0.3645 (7)0.1373 (4)0.6114 (7)0.0227 (19)0.480 (10)
H10C0.36860.19690.63140.027*0.480 (10)
H10D0.41950.12700.54520.027*0.480 (10)
C110.5665 (4)0.0977 (2)0.7352 (4)0.0374 (10)
H11A0.57720.08750.64380.045*
H11B0.61850.05490.79320.045*
C120.6273 (4)0.1815 (2)0.7807 (4)0.0363 (9)
H12A0.72550.18140.78210.044*
H12B0.58330.22440.71750.044*
C130.4637 (4)0.1933 (2)0.9208 (4)0.0407 (10)
H13A0.40980.23650.86520.049*
H13B0.45500.20121.01340.049*
C140.4095 (4)0.1085 (2)0.8714 (4)0.0441 (11)
H14A0.45830.06620.93290.053*
H14B0.31230.10540.87350.053*
U11U22U33U12U13U23
Cd10.01874 (11)0.01363 (11)0.01584 (12)−0.00060 (9)0.00039 (8)0.00174 (9)
Cl10.0207 (4)0.0231 (4)0.0576 (6)0.0037 (3)−0.0014 (4)0.0042 (4)
Cl20.0276 (4)0.0202 (4)0.0259 (4)−0.0011 (3)0.0097 (3)0.0048 (3)
O10.0382 (13)0.0120 (10)0.0204 (12)0.0043 (9)−0.0033 (10)0.0012 (9)
O20.0250 (12)0.0280 (13)0.0245 (13)−0.0034 (10)−0.0007 (10)−0.0050 (10)
N10.060 (2)0.0154 (14)0.0215 (16)0.0037 (14)−0.0132 (15)−0.0005 (12)
N20.0188 (13)0.0163 (12)0.0217 (15)−0.0021 (10)−0.0028 (11)0.0021 (11)
N30.0386 (17)0.0143 (13)0.0228 (17)−0.0021 (12)−0.0119 (13)−0.0002 (11)
C10.0189 (15)0.0175 (15)0.0274 (18)0.0022 (12)0.0050 (13)0.0013 (13)
C20.0249 (17)0.0140 (15)0.033 (2)0.0000 (13)0.0008 (14)0.0041 (14)
C30.0233 (16)0.0178 (15)0.035 (2)−0.0022 (13)0.0036 (15)−0.0054 (14)
C40.0135 (14)0.0259 (16)0.0187 (16)0.0003 (12)0.0004 (12)−0.0044 (13)
C50.0251 (16)0.0184 (15)0.0226 (18)0.0016 (13)0.0049 (13)0.0031 (13)
C60.0256 (16)0.0150 (14)0.0179 (17)0.0009 (12)0.0032 (13)−0.0023 (12)
C70.053 (2)0.0176 (16)0.0223 (19)0.0073 (16)−0.0088 (17)0.0040 (14)
C80.0235 (17)0.0355 (19)0.0224 (19)0.0033 (14)0.0015 (14)−0.0050 (15)
C90.040 (5)0.012 (3)0.021 (4)0.003 (3)−0.010 (3)−0.004 (3)
C100.020 (3)0.012 (3)0.027 (4)−0.003 (2)−0.002 (3)−0.004 (3)
C9'0.023 (4)0.020 (4)0.020 (4)0.007 (3)0.002 (3)0.000 (3)
C10'0.031 (4)0.014 (3)0.021 (4)−0.005 (3)0.004 (3)0.001 (3)
C110.034 (2)0.034 (2)0.053 (3)−0.0217 (16)0.0285 (19)−0.0279 (18)
C120.0297 (19)0.0302 (19)0.057 (3)−0.0137 (15)0.0255 (18)−0.0224 (18)
C130.060 (3)0.0272 (19)0.046 (3)−0.0171 (18)0.035 (2)−0.0180 (17)
C140.062 (3)0.0273 (19)0.058 (3)−0.0221 (18)0.044 (2)−0.0194 (19)
Cd1—O12.241 (2)C5—H50.9500
Cd1—N12.245 (3)C6—C71.448 (4)
Cd1—N22.475 (2)C7—H70.9500
Cd1—Cl12.4584 (8)C8—H8A0.9800
Cd1—Cl22.4797 (8)C8—H8B0.9800
O1—C11.303 (4)C8—H8C0.9800
O2—C41.380 (4)C9—C101.498 (7)
O2—C81.421 (4)C9—H9A0.9900
N1—C71.285 (4)C9—H9B0.9900
N1—C9'1.505 (6)C10—H10A0.9900
N1—C91.524 (6)C10—H10B0.9900
N2—C111.455 (4)C9'—C10'1.503 (7)
N2—C141.462 (4)C9'—H9C0.9900
N2—C101.509 (6)C9'—H9D0.9900
N2—C10'1.518 (6)C10'—H10C0.9900
N3—C131.474 (5)C10'—H10D0.9900
N3—C121.476 (5)C11—C121.525 (4)
N3—H3A0.918 (18)C11—H11A0.9900
N3—H3B0.897 (18)C11—H11B0.9900
C1—C21.410 (4)C12—H12A0.9900
C1—C61.423 (4)C12—H12B0.9900
C2—C31.373 (5)C13—C141.529 (5)
C2—H20.9500C13—H13A0.9900
C3—C41.388 (5)C13—H13B0.9900
C3—H30.9500C14—H14A0.9900
C4—C51.372 (4)C14—H14B0.9900
C5—C61.420 (4)
O1—Cd1—N182.23 (9)O2—C8—H8A109.5
O1—Cd1—Cl192.75 (6)O2—C8—H8B109.5
N1—Cd1—Cl1135.90 (10)H8A—C8—H8B109.5
O1—Cd1—N2153.88 (8)O2—C8—H8C109.5
N1—Cd1—N274.96 (9)H8A—C8—H8C109.5
Cl1—Cd1—N294.82 (6)H8B—C8—H8C109.5
O1—Cd1—Cl2104.60 (6)C10—C9—N1107.9 (5)
N1—Cd1—Cl2117.46 (9)C10—C9—H9A110.1
Cl1—Cd1—Cl2106.24 (3)N1—C9—H9A110.1
N2—Cd1—Cl297.20 (7)C10—C9—H9B110.1
C1—O1—Cd1129.33 (19)N1—C9—H9B110.1
C4—O2—C8116.0 (2)H9A—C9—H9B108.4
C7—N1—C9'118.1 (4)C9—C10—N2108.4 (5)
C7—N1—C9116.0 (4)C9—C10—H10A110.0
C9'—N1—C929.7 (3)N2—C10—H10A110.0
C7—N1—Cd1128.7 (2)C9—C10—H10B110.0
C9'—N1—Cd1111.0 (3)N2—C10—H10B110.0
C9—N1—Cd1113.8 (3)H10A—C10—H10B108.4
C11—N2—C14107.8 (3)C10'—C9'—N1103.3 (5)
C11—N2—C10126.5 (4)C10'—C9'—H9C111.1
C14—N2—C1098.8 (4)N1—C9'—H9C111.1
C11—N2—C10'98.2 (4)C10'—C9'—H9D111.1
C14—N2—C10'127.0 (4)N1—C9'—H9D111.1
C10—N2—C10'32.4 (3)H9C—C9'—H9D109.1
C11—N2—Cd1111.46 (19)C9'—C10'—N2111.4 (6)
C14—N2—Cd1108.48 (19)C9'—C10'—H10C109.3
C10—N2—Cd1102.3 (3)N2—C10'—H10C109.3
C10'—N2—Cd1103.2 (3)C9'—C10'—H10D109.3
C13—N3—C12111.8 (3)N2—C10'—H10D109.3
C13—N3—H3A113 (2)H10C—C10'—H10D108.0
C12—N3—H3A110 (2)N2—C11—C12114.2 (3)
C13—N3—H3B103 (2)N2—C11—H11A108.7
C12—N3—H3B110 (2)C12—C11—H11A108.7
H3A—N3—H3B109 (3)N2—C11—H11B108.7
O1—C1—C2119.3 (3)C12—C11—H11B108.7
O1—C1—C6124.9 (3)H11A—C11—H11B107.6
C2—C1—C6115.7 (3)N3—C12—C11110.1 (3)
C3—C2—C1123.2 (3)N3—C12—H12A109.6
C3—C2—H2118.4C11—C12—H12A109.6
C1—C2—H2118.4N3—C12—H12B109.6
C2—C3—C4120.4 (3)C11—C12—H12B109.6
C2—C3—H3119.8H12A—C12—H12B108.2
C4—C3—H3119.8N3—C13—C14109.8 (3)
C5—C4—O2125.2 (3)N3—C13—H13A109.7
C5—C4—C3119.0 (3)C14—C13—H13A109.7
O2—C4—C3115.8 (3)N3—C13—H13B109.7
C4—C5—C6121.4 (3)C14—C13—H13B109.7
C4—C5—H5119.3H13A—C13—H13B108.2
C6—C5—H5119.3N2—C14—C13113.8 (3)
C5—C6—C1120.0 (3)N2—C14—H14A108.8
C5—C6—C7115.2 (3)C13—C14—H14A108.8
C1—C6—C7124.8 (3)N2—C14—H14B108.8
N1—C7—C6127.5 (3)C13—C14—H14B108.8
N1—C7—H7116.3H14A—C14—H14B107.7
C6—C7—H7116.3
Cg1 is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
N3—H3A···O1i0.92 (2)1.80 (2)2.705 (3)166 (4)
N3—H3B···Cl2ii0.90 (2)2.33 (2)3.222 (3)174 (4)
C9—H9A···Cl1iii0.992.643.454 (8)139
C8—H8A···Cl2iv0.982.823.777 (3)167
C8—H8B···Cl1v0.982.763.514 (3)134
C13—H13A···Cl1i0.992.713.542 (4)142
C12—H12A···Cg1vi0.992.483.408 (4)156
C9'—H9D···Cg1iv0.992.723.620 (8)151
Table 1

Selected bond lengths (Å)

Cd1—O12.241 (2)
Cd1—N12.245 (3)
Cd1—N22.475 (2)
Cd1—Cl12.4584 (8)
Cd1—Cl22.4797 (8)
Table 2

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯O1i0.92 (2)1.80 (2)2.705 (3)166 (4)
N3—H3B⋯Cl2ii0.90 (2)2.33 (2)3.222 (3)174 (4)
C9—H9A⋯Cl1iii0.992.643.454 (8)139
C8—H8A⋯Cl2iv0.982.823.777 (3)167
C8—H8B⋯Cl1v0.982.763.514 (3)134
C13—H13A⋯Cl1i0.992.713.542 (4)142
C12—H12ACg1vi0.992.483.408 (4)156
C9′—H9DCg1iv0.992.723.620 (8)151

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Equilibrium studies in solution involving nickel(II) complexes of flexidentate Schiff base ligands: isolation and structural characterization of the planar red and octahedral green species involved in the equilibrium.

Authors:  Suman Mukhopadhyay; Debdas Mandal; Dipesh Ghosh; Israel Goldberg; Muktimoy Chaudhury
Journal:  Inorg Chem       Date:  2003-12-15       Impact factor: 5.165

3.  Dichlorido(2-{[2-(piperazin-4-ium-1-yl)eth-yl]imino-meth-yl}phenolate)cadmium(II).

Authors:  Muhammad Saleh Salga; Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18
  3 in total
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1.  Chemoprevention of Colonic Aberrant Crypt Foci by Novel Schiff Based Dichlorido(4-Methoxy-2-{[2-(Piperazin-4-Ium-1-Yl)Ethyl]Iminomethyl}Phenolate)Cd Complex in Azoxymethane-Induced Colorectal Cancer in Rats.

Authors:  Maryam Hajrezaie; Keivan Shams; Soheil Zorofchian Moghadamtousi; Hamed Karimian; Pouya Hassandarvish; Mozhgan Emtyazjoo; Maryam Zahedifard; Nazia Abdul Majid; Hapipah Mohd Ali; Mahmood Ameen Abdulla
Journal:  Sci Rep       Date:  2015-07-23       Impact factor: 4.379

2.  Apoptotic effect of novel Schiff based CdCl₂(C₁₄H₂₁N₃O₂) complex is mediated via activation of the mitochondrial pathway in colon cancer cells.

Authors:  Maryam Hajrezaie; Mohammadjavad Paydar; Chung Yeng Looi; Soheil Zorofchian Moghadamtousi; Pouya Hassandarvish; Muhammad Saleh Salga; Hamed Karimian; Keivan Shams; Maryam Zahedifard; Nazia Abdul Majid; Hapipah Mohd Ali; Mahmood Ameen Abdulla
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