Literature DB >> 21836894

Aqua-bis-(5-butyl-pyridine-2-carboxyl-ato)zinc monohydrate.

Yi-Wen Tao, Yun Wang.   

Abstract

In the title complex, [Zn(C(10)H(12)NO(2))(2)(H(2)O)]·H(2)O, the Zn(II) ion is coordinated by two N and two O atoms from two 5-n-butyl-pyridine-2-carboxyl-ato ligands and one O atom from a water mol-ecule in a distorted square-pyramidal geometry. In the crystal, inter-molecular O-H⋯O hydrogen bonds link mol-ecules into a two-dimensional supramolecular structure parallel to (001).

Entities:  

Year:  2011        PMID: 21836894      PMCID: PMC3151896          DOI: 10.1107/S1600536811021623

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Pons et al. (2004 ▶); Yoshikawa et al. (2002 ▶); Qin et al. (2007 ▶); He et al. (2007 ▶).

Experimental

Crystal data

[Zn(n class="CellLine">C20H12NO2)2(H2O)]·H2O M = 457.81 Triclinic, a = 9.6949 (13) Å b = 10.0054 (14) Å c = 11.9249 (17) Å α = 97.799 (2)° β = 91.533 (2)° γ = 113.464 (2)° V = 1047.1 (3) Å3 Z = 2 Mo Kα radiation μ = 1.21 mm−1 T = 293 K 0.48 × 0.42 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.594, T max = 0.839 7770 measured reflections 3847 independent reflections 3410 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.075 S = 1.06 3847 reflections 264 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021623/hg5046sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021623/hg5046Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C20H12NO2)2(H2O)]·H2OZ = 2
Mr = 457.81F(000) = 480
Triclinic, P1Dx = 1.452 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.6949 (13) ÅCell parameters from 5809 reflections
b = 10.0054 (14) Åθ = 2.3–27.0°
c = 11.9249 (17) ŵ = 1.21 mm1
α = 97.799 (2)°T = 293 K
β = 91.533 (2)°Prism, colorless
γ = 113.464 (2)°0.48 × 0.42 × 0.15 mm
V = 1047.1 (3) Å3
Bruker APEXII CCD area-detector diffractometer3847 independent reflections
Radiation source: fine-focus sealed tube3410 reflections with I > 2σ(I)
graphiteRint = 0.017
phi and ω scansθmax = 25.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −11→11
Tmin = 0.594, Tmax = 0.839k = −12→12
7770 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0384P)2 + 0.5567P] where P = (Fo2 + 2Fc2)/3
3847 reflections(Δ/σ)max = 0.008
264 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.9784 (2)0.0833 (2)0.17910 (17)0.0249 (4)
C21.0361 (2)0.2469 (2)0.22551 (17)0.0239 (4)
C31.1290 (3)0.3107 (2)0.32451 (18)0.0311 (5)
H31.16030.25280.36740.037*
C41.1761 (3)0.4611 (2)0.36059 (19)0.0341 (5)
H41.24130.50710.42820.041*
C51.1283 (2)0.5447 (2)0.29835 (17)0.0275 (4)
C61.0337 (2)0.4707 (2)0.19940 (17)0.0250 (4)
H60.99910.52540.15550.030*
C71.1750 (3)0.7081 (2)0.33348 (18)0.0336 (5)
H7A1.11000.73960.28780.040*
H7B1.28010.76010.31470.040*
C81.1666 (4)0.7566 (3)0.4578 (2)0.0496 (7)
H8A1.25150.75160.50250.059*
H8B1.07160.68660.48230.059*
C91.1725 (4)0.9123 (3)0.4849 (2)0.0544 (7)
H9A1.08390.91530.44390.065*
H9B1.16390.93410.56730.065*
C101.3102 (4)1.0292 (3)0.4550 (3)0.0681 (9)
H10A1.39871.03030.49760.102*
H10B1.30441.12510.47430.102*
H10C1.31931.01000.37340.102*
C110.6412 (2)0.2796 (2)−0.07353 (16)0.0238 (4)
C120.5820 (2)0.1149 (2)−0.11734 (16)0.0225 (4)
C130.4469 (2)0.0367 (2)−0.18239 (18)0.0285 (5)
H130.38660.0852−0.20490.034*
C140.4004 (2)−0.1145 (2)−0.21448 (18)0.0303 (5)
H140.3074−0.1704−0.25930.036*
C150.4900 (3)−0.1841 (2)−0.18108 (17)0.0281 (5)
C160.6254 (2)−0.0962 (2)−0.11735 (17)0.0264 (4)
H160.6890−0.1414−0.09490.032*
C170.4419 (3)−0.3486 (2)−0.21017 (18)0.0348 (5)
H17A0.5116−0.3770−0.16670.042*
H17B0.3397−0.3986−0.18530.042*
C180.4389 (4)−0.4036 (3)−0.3335 (2)0.0471 (7)
H18A0.5387−0.3483−0.36020.057*
H18B0.3629−0.3829−0.37670.057*
C190.4019 (3)−0.5685 (3)−0.3597 (2)0.0483 (7)
H19A0.4110−0.5946−0.44140.058*
H19B0.4777−0.5890−0.31610.058*
C200.2495 (4)−0.6646 (3)−0.3326 (3)0.0684 (10)
H20A0.2403−0.6422−0.25120.103*
H20B0.2340−0.7682−0.35200.103*
H20C0.1733−0.6469−0.37650.103*
N10.98977 (19)0.32660 (18)0.16371 (14)0.0230 (4)
N20.67075 (19)0.04994 (18)−0.08590 (13)0.0228 (3)
O10.88860 (16)0.03799 (15)0.09036 (12)0.0277 (3)
O21.02181 (19)0.00693 (17)0.23255 (13)0.0351 (4)
O30.76689 (16)0.33710 (15)−0.01438 (12)0.0262 (3)
O40.56258 (16)0.34586 (16)−0.09763 (13)0.0319 (3)
O1W1.02425 (16)0.24272 (15)−0.09978 (12)0.0253 (3)
H1A1.01530.1655−0.14470.038*
H1B1.11180.2841−0.06570.038*
O2W0.69815 (17)0.64141 (17)0.00070 (14)0.0364 (4)
H2A0.63060.65160.04090.055*
H2B0.66530.5519−0.03150.055*
Zn10.86873 (3)0.19830 (2)0.010473 (19)0.02289 (9)
U11U22U33U12U13U23
C10.0274 (11)0.0232 (10)0.0270 (10)0.0130 (9)0.0052 (9)0.0040 (8)
C20.0226 (10)0.0245 (10)0.0262 (10)0.0113 (9)0.0042 (8)0.0036 (8)
C30.0358 (12)0.0285 (11)0.0303 (11)0.0154 (10)−0.0039 (9)0.0032 (9)
C40.0394 (13)0.0308 (12)0.0278 (11)0.0121 (10)−0.0068 (10)−0.0004 (9)
C50.0316 (11)0.0231 (10)0.0253 (10)0.0090 (9)0.0039 (9)0.0015 (8)
C60.0281 (11)0.0225 (10)0.0252 (10)0.0110 (9)0.0035 (8)0.0035 (8)
C70.0424 (13)0.0221 (11)0.0295 (11)0.0072 (10)−0.0006 (10)0.0013 (9)
C80.085 (2)0.0331 (13)0.0338 (13)0.0273 (14)0.0130 (13)0.0042 (10)
C90.085 (2)0.0381 (15)0.0421 (15)0.0281 (15)0.0152 (14)0.0021 (11)
C100.073 (2)0.0339 (15)0.089 (2)0.0174 (15)0.0115 (18)−0.0066 (15)
C110.0247 (10)0.0241 (10)0.0238 (10)0.0115 (9)0.0061 (8)0.0019 (8)
C120.0224 (10)0.0227 (10)0.0220 (10)0.0088 (8)0.0053 (8)0.0025 (8)
C130.0252 (11)0.0319 (12)0.0285 (11)0.0128 (9)0.0025 (9)0.0013 (9)
C140.0246 (11)0.0301 (11)0.0272 (11)0.0037 (9)0.0008 (9)−0.0017 (9)
C150.0349 (12)0.0232 (10)0.0208 (10)0.0065 (9)0.0046 (9)0.0014 (8)
C160.0320 (11)0.0230 (10)0.0236 (10)0.0105 (9)0.0039 (9)0.0039 (8)
C170.0450 (14)0.0218 (11)0.0283 (11)0.0055 (10)−0.0014 (10)0.0005 (9)
C180.077 (2)0.0301 (13)0.0324 (13)0.0203 (13)0.0135 (12)0.0027 (10)
C190.0670 (18)0.0298 (13)0.0418 (14)0.0143 (13)0.0186 (13)−0.0012 (10)
C200.068 (2)0.0414 (16)0.069 (2)0.0008 (15)0.0174 (17)−0.0152 (14)
N10.0237 (9)0.0204 (8)0.0241 (8)0.0085 (7)0.0012 (7)0.0018 (7)
N20.0255 (9)0.0207 (8)0.0210 (8)0.0085 (7)0.0021 (7)0.0018 (6)
O10.0304 (8)0.0211 (7)0.0310 (8)0.0107 (6)−0.0030 (6)0.0020 (6)
O20.0506 (10)0.0279 (8)0.0316 (8)0.0223 (8)−0.0051 (7)0.0020 (6)
O30.0234 (7)0.0208 (7)0.0327 (8)0.0098 (6)−0.0020 (6)−0.0023 (6)
O40.0277 (8)0.0270 (8)0.0431 (9)0.0161 (7)−0.0029 (7)−0.0016 (7)
O1W0.0243 (7)0.0229 (7)0.0296 (7)0.0116 (6)0.0011 (6)0.0012 (6)
O2W0.0281 (8)0.0241 (8)0.0546 (10)0.0112 (7)−0.0004 (7)−0.0025 (7)
Zn10.02298 (14)0.01954 (13)0.02499 (14)0.00872 (10)−0.00164 (9)0.00013 (9)
C1—O21.241 (2)C13—C141.389 (3)
C1—O11.261 (3)C13—H130.9500
C1—C21.519 (3)C14—C151.391 (3)
C2—N11.345 (3)C14—H140.9500
C2—C31.376 (3)C15—C161.386 (3)
C3—C41.388 (3)C15—C171.508 (3)
C3—H30.9500C16—N21.342 (3)
C4—C51.387 (3)C16—H160.9500
C4—H40.9500C17—C181.494 (3)
C5—C61.395 (3)C17—H17A0.9900
C5—C71.506 (3)C17—H17B0.9900
C6—N11.332 (3)C18—C191.528 (3)
C6—H60.9500C18—H18A0.9900
C7—C81.511 (3)C18—H18B0.9900
C7—H7A0.9900C19—C201.480 (4)
C7—H7B0.9900C19—H19A0.9900
C8—C91.525 (3)C19—H19B0.9900
C8—H8A0.9900C20—H20A0.9800
C8—H8B0.9900C20—H20B0.9800
C9—C101.474 (4)C20—H20C0.9800
C9—H9A0.9900N1—Zn12.1007 (16)
C9—H9B0.9900N2—Zn12.0877 (17)
C10—H10A0.9800O1—Zn12.0416 (14)
C10—H10B0.9800O3—Zn12.0443 (14)
C10—H10C0.9800O1W—Zn11.9825 (14)
C11—O41.243 (2)O1W—H1A0.8498
C11—O31.264 (2)O1W—H1B0.8440
C11—C121.521 (3)O2W—H2A0.8514
C12—N21.341 (3)O2W—H2B0.8510
C12—C131.377 (3)
O2—C1—O1126.36 (19)C15—C14—H14120.0
O2—C1—C2117.37 (18)C16—C15—C14117.25 (19)
O1—C1—C2116.27 (17)C16—C15—C17120.7 (2)
N1—C2—C3121.57 (19)C14—C15—C17122.0 (2)
N1—C2—C1115.64 (17)N2—C16—C15122.97 (19)
C3—C2—C1122.79 (18)N2—C16—H16118.5
C2—C3—C4118.9 (2)C15—C16—H16118.5
C2—C3—H3120.6C18—C17—C15114.50 (19)
C4—C3—H3120.6C18—C17—H17A108.6
C5—C4—C3120.3 (2)C15—C17—H17A108.6
C5—C4—H4119.9C18—C17—H17B108.6
C3—C4—H4119.9C15—C17—H17B108.6
C4—C5—C6116.93 (19)H17A—C17—H17B107.6
C4—C5—C7122.71 (19)C17—C18—C19113.5 (2)
C6—C5—C7120.36 (19)C17—C18—H18A108.9
N1—C6—C5122.96 (19)C19—C18—H18A108.9
N1—C6—H6118.5C17—C18—H18B108.9
C5—C6—H6118.5C19—C18—H18B108.9
C5—C7—C8115.23 (19)H18A—C18—H18B107.7
C5—C7—H7A108.5C20—C19—C18114.3 (2)
C8—C7—H7A108.5C20—C19—H19A108.7
C5—C7—H7B108.5C18—C19—H19A108.7
C8—C7—H7B108.5C20—C19—H19B108.7
H7A—C7—H7B107.5C18—C19—H19B108.7
C7—C8—C9113.9 (2)H19A—C19—H19B107.6
C7—C8—H8A108.8C19—C20—H20A109.5
C9—C8—H8A108.8C19—C20—H20B109.5
C7—C8—H8B108.8H20A—C20—H20B109.5
C9—C8—H8B108.8C19—C20—H20C109.5
H8A—C8—H8B107.7H20A—C20—H20C109.5
C10—C9—C8114.8 (3)H20B—C20—H20C109.5
C10—C9—H9A108.6C6—N1—C2119.38 (17)
C8—C9—H9A108.6C6—N1—Zn1129.26 (14)
C10—C9—H9B108.6C2—N1—Zn1111.10 (13)
C8—C9—H9B108.6C12—N2—C16119.00 (17)
H9A—C9—H9B107.6C12—N2—Zn1112.83 (13)
C9—C10—H10A109.5C16—N2—Zn1128.17 (14)
C9—C10—H10B109.5C1—O1—Zn1115.66 (13)
H10A—C10—H10B109.5C11—O3—Zn1116.22 (12)
C9—C10—H10C109.5Zn1—O1W—H1A111.6
H10A—C10—H10C109.5Zn1—O1W—H1B110.8
H10B—C10—H10C109.5H1A—O1W—H1B110.4
O4—C11—O3125.56 (18)H2A—O2W—H2B108.2
O4—C11—C12117.92 (17)O1W—Zn1—O1106.09 (6)
O3—C11—C12116.52 (17)O1W—Zn1—O3102.80 (6)
N2—C12—C13122.02 (18)O1—Zn1—O3151.11 (6)
N2—C12—C11114.71 (17)O1W—Zn1—N2104.39 (6)
C13—C12—C11123.26 (18)O1—Zn1—N292.68 (6)
C12—C13—C14118.69 (19)O3—Zn1—N279.70 (6)
C12—C13—H13120.7O1W—Zn1—N1103.25 (6)
C14—C13—H13120.7O1—Zn1—N179.91 (6)
C13—C14—C15120.04 (19)O3—Zn1—N193.96 (6)
C13—C14—H14120.0N2—Zn1—N1152.36 (6)
O2—C1—C2—N1178.32 (18)C1—C2—N1—Zn1−6.2 (2)
O1—C1—C2—N1−2.8 (3)C13—C12—N2—C16−1.0 (3)
O2—C1—C2—C3−2.0 (3)C11—C12—N2—C16177.81 (17)
O1—C1—C2—C3176.9 (2)C13—C12—N2—Zn1179.31 (15)
N1—C2—C3—C4−0.3 (3)C11—C12—N2—Zn1−1.9 (2)
C1—C2—C3—C4−179.9 (2)C15—C16—N2—C12−0.2 (3)
C2—C3—C4—C50.8 (3)C15—C16—N2—Zn1179.46 (15)
C3—C4—C5—C6−0.5 (3)O2—C1—O1—Zn1−170.40 (17)
C3—C4—C5—C7179.7 (2)C2—C1—O1—Zn110.8 (2)
C4—C5—C6—N1−0.3 (3)O4—C11—O3—Zn1179.89 (16)
C7—C5—C6—N1179.44 (19)C12—C11—O3—Zn10.5 (2)
C4—C5—C7—C8−45.1 (3)C1—O1—Zn1—O1W89.95 (15)
C6—C5—C7—C8135.1 (2)C1—O1—Zn1—O3−90.86 (18)
C5—C7—C8—C9−164.3 (2)C1—O1—Zn1—N2−164.24 (14)
C7—C8—C9—C10−59.7 (4)C1—O1—Zn1—N1−11.06 (14)
O4—C11—C12—N2−178.46 (18)C11—O3—Zn1—O1W101.39 (14)
O3—C11—C12—N20.9 (3)C11—O3—Zn1—O1−77.81 (18)
O4—C11—C12—C130.4 (3)C11—O3—Zn1—N2−1.18 (14)
O3—C11—C12—C13179.76 (19)C11—O3—Zn1—N1−154.05 (14)
N2—C12—C13—C141.1 (3)C12—N2—Zn1—O1W−99.05 (13)
C11—C12—C13—C14−177.59 (18)C16—N2—Zn1—O1W81.32 (17)
C12—C13—C14—C15−0.1 (3)C12—N2—Zn1—O1153.59 (13)
C13—C14—C15—C16−1.0 (3)C16—N2—Zn1—O1−26.04 (17)
C13—C14—C15—C17177.75 (19)C12—N2—Zn1—O31.66 (13)
C14—C15—C16—N21.1 (3)C16—N2—Zn1—O3−177.97 (17)
C17—C15—C16—N2−177.61 (19)C12—N2—Zn1—N180.37 (19)
C16—C15—C17—C18−112.4 (3)C16—N2—Zn1—N1−99.3 (2)
C14—C15—C17—C1868.9 (3)C6—N1—Zn1—O1W78.55 (18)
C15—C17—C18—C19175.5 (2)C2—N1—Zn1—O1W−95.41 (14)
C17—C18—C19—C2063.4 (4)C6—N1—Zn1—O1−177.13 (18)
C5—C6—N1—C20.9 (3)C2—N1—Zn1—O18.90 (13)
C5—C6—N1—Zn1−172.66 (15)C6—N1—Zn1—O3−25.60 (18)
C3—C2—N1—C6−0.6 (3)C2—N1—Zn1—O3160.44 (13)
C1—C2—N1—C6179.13 (17)C6—N1—Zn1—N2−100.9 (2)
C3—C2—N1—Zn1174.08 (16)C2—N1—Zn1—N285.17 (19)
D—H···AD—HH···AD···AD—H···A
O2W—H2B···O40.851.942.780 (2)172
O2W—H2A···O4i0.852.022.849 (2)165
O1W—H1B···O2Wii0.841.802.638 (2)175
O1W—H1A···O2iii0.851.792.636 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2W—H2B⋯O40.851.942.780 (2)172
O2W—H2A⋯O4i0.852.022.849 (2)165
O1W—H1B⋯O2Wii0.841.802.638 (2)175
O1W—H1A⋯O2iii0.851.792.636 (2)174

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Development of new insulinomimetic zinc(II) picolinate complexes with a Zn(N2O2) coordination mode: structure characterization, in vitro, and in vivo studies.

Authors:  Yutaka Yoshikawa; Eriko Ueda; Kenji Kawabe; Hiroyuki Miyake; Toshikazu Takino; Hiromu Sakurai; Yoshitane Kojima
Journal:  J Biol Inorg Chem       Date:  2001-07-11       Impact factor: 3.358

  2 in total

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