Literature DB >> 21833875

Modeling the MoFe nitrogenase system with broken symmetry density functional theory.

Gregory M Sandala1, Louis Noodleman.   

Abstract

Density functional theory (DFT) represents a unified framework for gaining molecular level insight into molybdenum-iron (MoFe) nitrogenase. However, accurately describing the electronic structure of the spin-polarized and spin-coupled iron-molybdenum cofactor (FeMo-co) where N(2) reduction occurs within MoFe nitrogenase is challenging. Therefore, the enhancement of DFT to include broken symmetry (BS-DFT) plus approximate spin projection has proven valuable because it provides a procedure to compute reliable geometries, energies, redox potentials, and quantities relevant to Mössbauer and ENDOR spectroscopies. After describing the theoretical tools necessary to obtain this information, we show by way of examples how BS-DFT is a very powerful partner to experiment. We expect that quantitative quantum chemical theory of this type will play an ever-increasing role in helping to decipher complex bioinorganic systems like those found in MoFe nitrogenase.

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Year:  2011        PMID: 21833875     DOI: 10.1007/978-1-61779-194-9_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

1.  Broken-Symmetry DFT Computations for the Reaction Pathway of IspH, an Iron-Sulfur Enzyme in Pathogenic Bacteria.

Authors:  Patrick G Blachly; Gregory M Sandala; Debra Ann Giammona; Donald Bashford; J Andrew McCammon; Louis Noodleman
Journal:  Inorg Chem       Date:  2015-06-22       Impact factor: 5.165

2.  Utilizing a dynamical description of IspH to aid in the development of novel antimicrobial drugs.

Authors:  Patrick G Blachly; César A F de Oliveira; Sarah L Williams; J Andrew McCammon
Journal:  PLoS Comput Biol       Date:  2013-12-19       Impact factor: 4.475

3.  Use of Broken-Symmetry Density Functional Theory To Characterize the IspH Oxidized State: Implications for IspH Mechanism and Inhibition.

Authors:  Patrick G Blachly; Gregory M Sandala; Debra Ann Giammona; Tiqing Liu; Donald Bashford; J Andrew McCammon; Louis Noodleman
Journal:  J Chem Theory Comput       Date:  2014-08-13       Impact factor: 6.006

  3 in total

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