Literature DB >> 21832012

Comparison of multilocus variable-number tandem-repeat analysis and multilocus sequence typing for differentiation of hemolytic-uremic syndrome-associated Escherichia coli (HUSEC) collection strains.

Christian Jenke1, Björn Arne Lindstedt, Dag Harmsen, Helge Karch, Lin Thorstensen Brandal, Alexander Mellmann.   

Abstract

Multilocus variable-number tandem-repeat analysis (MLVA) was compared to multilocus sequence typing (MLST) to differentiate hemolytic uremic syndrome-associated enterohemorrhagic Escherichia coli strains. Although MLVA--like MLST--was highly discriminatory (index of diversity, 0.988 versus 0.984), a low level of concordance demonstrated the limited ability of MLVA to reflect long-term evolutionary events.

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Year:  2011        PMID： 21832012      PMCID： PMC3187322          DOI： 10.1128/JCM.05035-11

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  21 in total

1.  Second generation subtyping: a proposed PulseNet protocol for multiple-locus variable-number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 (STEC O157).

Authors:  Eija Hyytiä-Trees; Sandra C Smole; Patricia A Fields; Bala Swaminathan; Efrain M Ribot
Journal:  Foodborne Pathog Dis       Date:  2006       Impact factor: 3.171

2.  Evaluation of multiple-locus variable number of tandem-repeats analysis (MLVA) as a method for identification of clonal groups among enteropathogenic, enterohaemorrhagic and avirulent Escherichia coli O26 strains.

Authors:  Angelika Miko; Bjørn-Arne Lindstedt; Lin T Brandal; Inger Løbersli; Lothar Beutin
Journal:  FEMS Microbiol Lett       Date:  2009-12-03       Impact factor: 2.742

3.  Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity.

Authors:  P R Hunter; M A Gaston
Journal:  J Clin Microbiol       Date:  1988-11       Impact factor: 5.948

4.  Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes.

Authors:  J A Carriço; C Silva-Costa; J Melo-Cristino; F R Pinto; H de Lencastre; J S Almeida; M Ramirez
Journal:  J Clin Microbiol       Date:  2006-07       Impact factor: 5.948

Review 5.  Enterohaemorrhagic Escherichia coli in human medicine.

Authors:  Helge Karch; Phillip I Tarr; Martina Bielaszewska
Journal:  Int J Med Microbiol       Date:  2005-10       Impact factor: 3.473

6.  Multilocus variable-number tandem repeat analysis distinguishes outbreak and sporadic Escherichia coli O157:H7 isolates.

Authors:  Anna C Noller; M Catherine McEllistrem; Antonio G F Pacheco; David J Boxrud; Lee H Harrison
Journal:  J Clin Microbiol       Date:  2003-12       Impact factor: 5.948

7.  Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area.

Authors:  Philip Supply; Robin M Warren; Anne-Laure Bañuls; Sarah Lesjean; Gian D Van Der Spuy; Lee-Anne Lewis; Michel Tibayrenc; Paul D Van Helden; Camille Locht
Journal:  Mol Microbiol       Date:  2003-01       Impact factor: 3.501

8.  Subtyping of pathogenic Escherichia coli strains using flagellar (H)-antigens: serotyping versus fliC polymorphisms.

Authors:  Rita Prager; Ute Strutz; Angelika Fruth; Helmut Tschäpe
Journal:  Int J Med Microbiol       Date:  2003-02       Impact factor: 3.473

9.  DNA fingerprinting of Shiga-toxin producing Escherichia coli O157 based on Multiple-Locus Variable-Number Tandem-Repeats Analysis (MLVA).

Authors:  Bjørn-Arne Lindstedt; Even Heir; Elisabet Gjernes; Traute Vardund; Georg Kapperud
Journal:  Ann Clin Microbiol Antimicrob       Date:  2003-12-10       Impact factor: 3.944

10.  Genetic diversity among clonal lineages within Escherichia coli O157:H7 stepwise evolutionary model.

Authors:  Peter C H Feng; Steven R Monday; David W Lacher; Lesley Allison; Anja Siitonen; Christine Keys; Marjut Eklund; Hideki Nagano; Helge Karch; James Keen; Thomas S Whittam
Journal:  Emerg Infect Dis       Date:  2007-11       Impact factor: 6.883
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  5 in total

Review 1.  Facing glycosphingolipid-Shiga toxin interaction: dire straits for endothelial cells of the human vasculature.

Authors:  Andreas Bauwens; Josefine Betz; Iris Meisen; Björn Kemper; Helge Karch; Johannes Müthing
Journal:  Cell Mol Life Sci       Date:  2012-07-06       Impact factor: 9.261

2.  Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing.

Authors:  Songzhe Fu; Sophie Octavia; Mark M Tanaka; Vitali Sintchenko; Ruiting Lan
Journal:  J Clin Microbiol       Date:  2015-05-27       Impact factor: 5.948

Review 3.  Recent advances in understanding enteric pathogenic Escherichia coli.

Authors:  Matthew A Croxen; Robyn J Law; Roland Scholz; Kristie M Keeney; Marta Wlodarska; B Brett Finlay
Journal:  Clin Microbiol Rev       Date:  2013-10       Impact factor: 26.132

4.  Sub-typing of extended-spectrum-β-lactamase-producing isolates from a nosocomial outbreak: application of a 10-loci generic Escherichia coli multi-locus variable number tandem repeat analysis.

Authors:  Nahid Karami; Lisa Helldal; Christina Welinder-Olsson; Christina Ahrén; Edward R B Moore
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240

5.  Enterohemorrhagic Escherichia coli as causes of hemolytic uremic syndrome in the Czech Republic.

Authors:  Monika Marejková; Květa Bláhová; Jan Janda; Angelika Fruth; Petr Petráš
Journal:  PLoS One       Date:  2013-09-06       Impact factor: 3.240
  5 in total

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